lyve1b (LOC106561566)


Basic Information

Item Value
gene id lyve1b
gene name LOC106561566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91227098 ~ 91230204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576733.2
GGACATTGTTTGGTGAAAGTTGCCCCGCTCACTCTCTTCATTCTGGTAGCATCTTCACTATAGTGCACCATTAAGAGTCTGATATTAAATGTTACCAGACAAACCATGGCAAGGGTCTGGCTCTTTTCTTGCTTTCTGTTCACCATGGCTGTGTATGTACTGACTTTTGAATTCAATCTCATTAAAGTTTTCCCTGAGGTTGGCAGAAACTCTGGAGTGTCCATGGTGTCTTACGGGAATCAATATGCCCTGAACGCCTCTCAGGCTAGAGCTATGTGCCTCTTCCTGAACATCACCATAGCGACCTGGGAACAGGTCCATACTGCTCACCAACATGGACTGGAGACATGCGGATATGGCTGGATAGATGAACAGATTGCAGTTATCCCTCGCATTGTGAAGAGCATGAAATGTGGCAGGAATAACATTGGGTTAATAATATGGAGAGCACCGATTAACAAACCCTTTCATGTGTTTTGTTTCAATTTAACAGATTTAGAGAATCCTTTGGATATCACAACACCTAAAGTCCAGACCACAACAAAAACTATGACCACTACAACAGTCTCAACATCAGCACCAACTACTACCAGAACTGTGAAAAACAGGGTCAAGACAACACCTAAAGTTCCAGCACCTAAATCAACAACACAAGTCTCAAGATTGGCCCCCACTACCACAACAACGACCACTACTTACCTGGTCCAGTCAACAACCAGCTTcatctccacttctcctcctccctccccatccccctcctccctcccttgtcccacttccctctctcacttacttcccacatcatctcgctctctccccagctctttctctccctcatctccacCTCTCATCTCGTTTTTGTCTTTCACCTCTTCCTCCCTCGTTTCCTCTCCTTCTCAAAACACCTCCAACCACATCGAGAGCCCAGTCGGAGCAATATCTACGGCGCTCCTTGTCGTTCTACCCTTGCTGGCTGCGGCAGTAGCAGTGTGTTACTACAAAACGACCAGGGGTGTATTCCCAATCCAATTCTGGCGCAGAGGACAGCACAACTTGAAGGATGACATAGAGACTGAGATGTGGAGACACACGGACAGTGAGATGGATCTGCAGGACCCacaacagagagaaggaggagaggagaacggagACAGGAAGTTCACCAGTGACATCATCGTCAGTAATCCAGAGACCACAACAAATGGCCCTTAGTAGcgatacagtgaggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgaggcctgtaattttcatcataggtacacttcaactatgacagaca
>XM_021576734.2
GTGGACATTGTTTGGTGAAAGTTGCCCCGCTCACTCTCTTCATTCTGGTAGCATCTTCACTATAGTGCACCATTAAGAGTCTGATATTAAATGTTACCAGACAAACCATGGCAAGGGTCTGGCTCTTTTCTTGCTTTCTGTTCACCATGGCTGTGTATGTACTGACTTTTGAATTCAATCTCATTAAAGTTTTCCCTGAGGTTGGCAGAAACTCTGGAGTGTCCATGGTGTCTTACGGGAATCAATATGCCCTGAACGCCTCTCAGGCTAGAGCTATGTGCCTCTTCCTGAACATCACCATAGCGACCTGGGAACAGGTCCATACTGCTCACCAACATGGACTGGAGACATGCGGATATGGCTGGATAGATGAACAGATTGCAGTTATCCCTCGCATTGTGAAGAGCATGAAATGTGGCAGGAATAACATTGGGTTAATAATATGGAGAGCACCGATTAACAAACCCTTTCATGTGTTTTGTTTCAATTTAACAGATTTAGAGAATCCTTTGGATATCACAACACCTAAAGTCCAGACCACAACAAAAACTATGACCACTACAACAGTCTCAACATCAGCACCAACTACTACCAGAACTGTGAAAAACAGGGTCAAGACAACACCTAAAGTTCCAGCACCTAAATCAACAACACAAGTCTCAAGATTGGCCCCCACTACCACAACAACGACCACTACTTACCTGGTCCAGTCAACAACCAGCTTcatctccacttctcctcctccctccccatccccctcctccctcccttgtcccacttccctctctcacttacttcccacatcatctcgctctctccccagctctttctctccctcatctccacCTCTCATCTCGTTTTTGTCTTTCACCTCTTCCTCCCTCGTTTCCTCTCCTTCTCAAAACACCTCCAACCACATCGAGAGCCCAGTCGGAGCAATATCTACGGCGCTCCTTGTCGTTCTACCCTTGCTGGCTGCGGCAGTAGCAGTGTGTTACTACAAAACTGGAAGCAAATGAAGCATGGTATGCAGAACAAGCAGAGGACCAGGGGTGTATTCCCAATCCAATTCTGGCGCAGAGGACAGCACAACTTGAAGGATGACATAGAGACTGAGATGTGGAGACACACGGACAGTGAGATGGATCTGCAGGACCCacaacagagagaag

Function

NR:

description
lymphatic vessel endothelial hyaluronic acid receptor 1-like isoform X2

GO: NA

KEGG:

id description
K19012 LYVE1; lymphatic vessel endothelial hyaluronan receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576733.2 False 1328 mRNA 0.47 6 91227098 91230202
XM_021576734.2 True 1172 mRNA 0.47 7 91227294 91230204

Neighbor

gene id symbol gene type direction distance location
c2h12orf29 cssa10h12orf29 coding downstream 7528 91214667 ~ 91219570 (-)
tmtc3 tmtc3 coding downstream 69655 91046731 ~ 91157443 (-)
cep41 cep41 coding downstream 620149 90599314 ~ 90606949 (-)
tes LOC106561556 coding downstream 650625 90557570 ~ 90576473 (-)
cav2 LOC106561555 coding downstream 756909 90464686 ~ 90470189 (-)
eif4g2b LOC106561567 coding upstream 9540 91239744 ~ 91254841 (-)
nts LOC106561634 coding upstream 330496 91560700 ~ 91581306 (-)
LOC110499699 NA coding upstream 376541 91606745 ~ 91624204 (-)
alx1 LOC106561592 coding upstream 438193 91668397 ~ 91673730 (-)
lrriq1 lrriq1 coding upstream 461649 91691853 ~ 91740829 (-)
G202932 NA non-coding downstream 300086 90850730 ~ 90927012 (-)
G202884 NA non-coding downstream 445121 90781693 ~ 90781977 (-)
G202872 NA non-coding downstream 465956 90760926 ~ 90761142 (-)
G202871 NA non-coding downstream 466461 90760392 ~ 90760637 (-)
G202870 NA non-coding downstream 467679 90759183 ~ 90759419 (-)
G203162 NA non-coding upstream 8026 91238230 ~ 91238437 (-)
G203163 NA non-coding upstream 8313 91238517 ~ 91238814 (-)
G203780 NA non-coding upstream 167860 91398064 ~ 91398482 (-)
G203829 NA non-coding upstream 234106 91464310 ~ 91500557 (-)
G204018 NA non-coding upstream 529534 91759738 ~ 91801240 (-)
G202279 NA other downstream 785673 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 1617208 89606837 ~ 89609890 (-)
G198912 NA other downstream 3900629 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 4323142 86903036 ~ 86903956 (-)
G197554 NA other downstream 5263433 85959845 ~ 85963665 (-)
G203915 rassf9 other upstream 359008 91589212 ~ 91591049 (-)
G204024 NA other upstream 556983 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 1167856 92398054 ~ 92443838 (-)
G205192 NA other upstream 1731840 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 3082220 94312424 ~ 94312774 (-)

Expression


Co-expression Network