nts (LOC106561634)


Basic Information

Item Value
gene id nts
gene name LOC106561634
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91560700 ~ 91581306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958964.1
ACTTCATTCATTCTACCTACAGCCAGGAGGACACAGTCACACACTGTCACTGACAGGAAAAACAGAACACAAGGAGAAACAGACTGAGTGAGTGcactccttctccacctccacctccatctctgtctctctttctccatttgaCCCCTAACCCTATGGACTTGGGTCCTGCTTAGCTAGCTGGATTCAGAGTGTGGGATTTTCTCCAAGATGCAGACACAGTTGGCGTTTGTGCTTCTCCTCTGTTTGCCGTGTGGCGTATTATGTTCAGATGTTGACCAAGAACAGCGGGCGATAGAAGAGGAGCTATTGAGCAGTCTCTTTACTTCAAAGAGCAAGCAGAACGCCCCCTACTGGCGTGTGTCCCTGGTGAATGTGTGCAGGATGGTGAACAGCCTGATAAACAGCCGGTTGTGGAGAGAACAGGTGGAGTATAACACTGGGGAGGAGCTGGGGGAGAGGCTGGCCTCCCTGCCGGAGCCCTTGGATGAGCTCCTCGATCTACAGCACATCTGCAGAGTACTGCAGCCCCGAGAGCTGCTTGACAACTCTCAAGAGTACCTTGACGCCGATCAAAACAGTGACAACCCGCTCAAAAGGAAATCACCGTATATTTTTAAGAGGCAAGTGAAAAACACCAAAGCTCGGAGGCCGTACATCTTGAAGCGGAGTACATTTTACTgacgaggagaaagaggagaaagacacTATACATTCTGTGGATATGTGACCATACGTGCTCTCTGTTGTAGTGTTATTACTGATGTTTCCGCAGTGTTTTGTCCATACAGATGATATCTCAAATCTGTGTCTGTCACTATATGTCTCAAATCACATTCTAGGCCCAATCCTGCTCCAAAAGAGAGGACCAATTTAAATAAAAGCATACAAAAGCAGTAAGCAAATGTGTATCTTTTGAGAGACTTTGTATTTACTATATTTGTTCACTCCATGTATTTTCTTTCCAATGTGATTAAACAATACATATTTCAA

Function

NR:

description
neurotensin/neuromedin N-like

GO: NA

KEGG:

id description
K05235 NTS; neurotensin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958964.1 True 993 mRNA 0.46 4 91560700 91581306

Neighbor

gene id symbol gene type direction distance location
eif4g2b LOC106561567 coding downstream 305859 91239744 ~ 91254841 (-)
lyve1b LOC106561566 coding downstream 330496 91227098 ~ 91230204 (-)
c2h12orf29 cssa10h12orf29 coding downstream 341130 91214667 ~ 91219570 (-)
tmtc3 tmtc3 coding downstream 403257 91046731 ~ 91157443 (-)
cep41 cep41 coding downstream 953751 90599314 ~ 90606949 (-)
LOC110499699 NA coding upstream 25439 91606745 ~ 91624204 (-)
alx1 LOC106561592 coding upstream 87091 91668397 ~ 91673730 (-)
lrriq1 lrriq1 coding upstream 110547 91691853 ~ 91740829 (-)
lrrk2 lrrk2 coding upstream 198895 91780201 ~ 91837180 (-)
LOC110499762 cbpa2 coding upstream 440449 92021755 ~ 92027773 (-)
G203829 NA non-coding downstream 60143 91464310 ~ 91500557 (-)
G203780 NA non-coding downstream 162218 91398064 ~ 91398482 (-)
G203163 NA non-coding downstream 321886 91238517 ~ 91238814 (-)
G203162 NA non-coding downstream 322263 91238230 ~ 91238437 (-)
G202932 NA non-coding downstream 633688 90850730 ~ 90927012 (-)
G204018 NA non-coding upstream 178432 91759738 ~ 91801240 (-)
G203975 LOC106561596 non-coding upstream 189996 91771302 ~ 91773128 (-)
G204050 NA non-coding upstream 270011 91851317 ~ 91852018 (-)
G204052 NA non-coding upstream 271989 91853295 ~ 91853597 (-)
G204096 NA non-coding upstream 320651 91901957 ~ 91905169 (-)
G202279 NA other downstream 1119275 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 1950810 89606837 ~ 89609890 (-)
G198912 NA other downstream 4234231 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 4656744 86903036 ~ 86903956 (-)
G197554 NA other downstream 5597035 85959845 ~ 85963665 (-)
G203915 rassf9 other upstream 7906 91589212 ~ 91591049 (-)
G204024 NA other upstream 205881 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 816754 92398054 ~ 92443838 (-)
G205192 NA other upstream 1380738 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 2731118 94312424 ~ 94312774 (-)

Expression


Co-expression Network