alx1 (LOC106561592)


Basic Information

Item Value
gene id alx1
gene name LOC106561592
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91668397 ~ 91673730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576768.2
CTTCAAGACAAGACATATTAACGGCTTTGAACAATTATTGTGTTATCGGGGTAGCCGATATAGCTCTTCAAATTTGTTGAACGTCGACAGAACTTATTTATGGTCAGTTGACAAGGTTCTGTGAGCGACGAGATCTCGGGAAGGAGATCATGGAATACATGAACGATAAATTCGCATTGAAAAGTCAAGCGATTAAGGGCAGCGACTACTACATGGGCTCTGGCGGCGCGCTGGACCAAGTTATGGAGAGTTTGGACAGTGTGCAGTACTACAGCAAGACCTCGCCCAAGTGTGTGCAGGCCTTCGGGATACAGAGCAGCGAGCACCACTCGCGAATGGAGCGGTCCTCGCCTTGCGGAGACCAACACGCGAATTATGGTGTCCAGAAAACGGAAGATACCTTGCACGCGGACCTTGGAAGGTCGATCGACAACTGTTGCAATCTGAGGGCCTCGCCGGTAACGGCGTGTCAAGAGAAAACGGATTTGGACGAAATGGGTGACAAGTGTGACAGTAACGTATCGAGCAGTAAGAAGAGGCGACACAGGACGACATTCACGAGCGCACAGCTGGAGGAGTTGGAGAAGGTGTTTCAGAAAACTCATTACCCAGATGTTTATGTGAGAGAACAACTGGCGATGAGGACGGAACTAACCGAGGCCAGAGTGCAGGTGTGGTTTCAAAACAGAAGAGCCAAGTGGAGAAAAAGAGAACGTTATGGACAGATTCAACAGGCAAAAAGTCACTTTGCAGCCACATACGACATATCCGTGTTGCCAAGAACAGACAGTTACTCACAGATCTCCAACAACCTGTGGCCCAGCCCTGCTCCCAGTGGCTCTGTGGTCTCCTCCTGCATGCTCCCCCGTGGATCTCCCCCATGTGTCACCTCGTATTCCCACTCCCCCCGCTCCGCAGCCGACCACGGGTACGTGGGCTTCCCCAACCAGCAGAACCAGTTTGGACACGTCTCCCTCAACAACTTCTTCACGGCCGACTCCCTCCTCACGCCCTCGCCCAATGGACACCCATTCGAGACCAAGCCTGAATTTGAGAGACGCTCATCCAGCATTGCTGTGCTGCGGATGAAGGCTAAGGAACATGCGGCCAACATATCCTGGGCCATGTGATTGTGAATGTCTCTTCTGCATGTCCAGCCAGCTGACTGACTCACAGCCTCTCTAACTTTAGCATTACTACTGCGCACGTTTATAACCCCCAATGTTGACTGACAGAAATCTGACTGTGACACTGATTGATTGAAGAGGACATACAGAAGTCAAAATAATGTAGGCCTAGATACTGATAACTGACTGGTTGTCTCCGAGACTGTAGAGACATGAAGCCTCTCCATGGAGTCAACAAACTGTGAACCTGTTGGTCAAAAGAGTCAAATGTCAGAGGAGATGAACTGCTTCAAGATTTAAAGGTCTGCTCATCGAGGTTGAGCAGTGCATTTCAGTTCACAACACACAGATGAAATTTACTTTCAGGTTAACACCCGATGTTAAACAATGCATTGCTGAAAATGTACCCCTCTGTGACTTGAAAACTCTGAGCCGGTTCGAGCACTCCATtaagagtggtgcagcggtctaaggcactgcatctcagtattagaggcgtcactacagaccctggtttgattccaggctgtatcacaaccggccgtgattgggagtcccatagggcggcgcacaattggcccagcgtcgtctgggttagggtttggtcggggtaggccgtcattgtaaataaggatttgttcttaactgacttgcctagttaaataaaggttaaataaaatacataaataaaaagcATGCTTTGTATGTCCAGGAAATAATCCATCTAAAGATCAACTATAGTATGTCCTATAAGTTGAGGACAGTGTGAATATTGTAATTCCCTGTGCTTTATAATTCCATTGCCCTACAGTCACTAAAACGATGCACACACATCTTAGAGGTAGAAGGCCGTGTTGTTATGATTCTGGATGGTCAgacagctagcaacaatgacaaaaaAGCTGCtatgtggggaatcgtaggtggctcgtttcagctcgTTGTCTTGTTATTGATATCATGTCTTGTTCCGAGTTGTTTTGACTCAAGCCacatctatgctaatatggcaaaaattcactagctagctaaccaacaactgtaacaatgtatctGAGAGACAACTGCtcattgtgaaaatgtatttatgtttttaataaacatttggagactaaatataTACGTTGTCAACAATCTTGTCTGTTTTGCCCCAAGGGTATTGCACGTATTGGTTTTGTCACAAACAACCCAACCTTCTACTGTATACCACTCAGGACTTTCAGAGCAGAACAGAAATGAAATGGACTGACTTACTAACATGTCTGCAGTGTGCCTTGCGGTAAAGCTATGTAACCTCATtagctgtgtctgtgttgtgctACAAGGCCCCAGCACAGGAAGCAGTTAGACATTTTGTCATTATAATTTCTATTAAAATGATCAAATAAAAAGATAATAAAAACCTCAA

Function

NR:

description
ALX homeobox protein 1-like

GO: NA

KEGG:

id description
K09334 ALX1, CART1; ALX homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576768.2 True 2535 mRNA 0.46 4 91668397 91673730

Neighbor

gene id symbol gene type direction distance location
LOC110499699 NA coding downstream 44193 91606745 ~ 91624204 (-)
nts LOC106561634 coding downstream 87091 91560700 ~ 91581306 (-)
eif4g2b LOC106561567 coding downstream 413556 91239744 ~ 91254841 (-)
lyve1b LOC106561566 coding downstream 438193 91227098 ~ 91230204 (-)
c2h12orf29 cssa10h12orf29 coding downstream 448827 91214667 ~ 91219570 (-)
lrriq1 lrriq1 coding upstream 18123 91691853 ~ 91740829 (-)
lrrk2 lrrk2 coding upstream 106471 91780201 ~ 91837180 (-)
LOC110499762 cbpa2 coding upstream 348025 92021755 ~ 92027773 (-)
LOC110499841 LOC106561606 coding upstream 479654 92153384 ~ 92190372 (-)
LOC110533906 NA coding upstream 523606 92197336 ~ 92202031 (-)
G203829 NA non-coding downstream 167840 91464310 ~ 91500557 (-)
G203780 NA non-coding downstream 269915 91398064 ~ 91398482 (-)
G203163 NA non-coding downstream 429583 91238517 ~ 91238814 (-)
G203162 NA non-coding downstream 429960 91238230 ~ 91238437 (-)
G202932 NA non-coding downstream 741385 90850730 ~ 90927012 (-)
G204018 NA non-coding upstream 86008 91759738 ~ 91801240 (-)
G203975 LOC106561596 non-coding upstream 97572 91771302 ~ 91773128 (-)
G204050 NA non-coding upstream 177587 91851317 ~ 91852018 (-)
G204052 NA non-coding upstream 179565 91853295 ~ 91853597 (-)
G204096 NA non-coding upstream 228227 91901957 ~ 91905169 (-)
G203915 rassf9 other downstream 77348 91589212 ~ 91591049 (-)
G202279 NA other downstream 1226972 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 2058507 89606837 ~ 89609890 (-)
G198912 NA other downstream 4341928 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 4764441 86903036 ~ 86903956 (-)
G204024 NA other upstream 113457 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 724330 92398054 ~ 92443838 (-)
G205192 NA other upstream 1288314 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 2638694 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 2639660 94313390 ~ 94313918 (-)

Expression


Co-expression Network