lrriq1 (lrriq1)


Basic Information

Item Value
gene id lrriq1
gene name lrriq1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91691853 ~ 91740829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580318.2
AGTTTCCATAGCGACCACAGTTCCATTTAGACGCGGATGGAATGATTTGACGTTCATGGTTAGAAAACGGGTTAGCAAAGTATAcaaaacacagacaaacacagCTGCTAGGTAGACCATGGATGTCAGTCAAGAAGACCTGAGCAAACTGAGCATCAACAACTCCTCTGAGGATATTGAATTAGATCATTCTTATCAGGAAGATTTTTACTCATCTGCTGATGAAGATCATGCCGATGAAGATGATGTTTCAGATAAAATCCCAGAATCAATGCTCAAATATTTTCAAGCCTCCGAGAACAGAGCAAGTCAGTTTGAAAAGCTCATCCTTGAGGACAATGAAGATGATGATTCCAGAGCGGCTGAAGTGTATTCCATCATTTCAAGTCGTTCTGAAGACCTTTTAATGGAACTGGCCTCTGACTTAGGCCTACACGAGGACCCAGTGAAGTTAAAAGAACAAGTCATGTTAGAGATGGAGGATGAGAAGTTGAACACTATCCCCAACAAGGCCTGCCCTCACACTGTATCCGACAGTGACATTACAGACAGAGTGCCACACAACAGTGAGGATGATATTGAATGTGATGCATATTTAAGGTCTGAAAAGCAACTCAGTTTGGAACTGAAAACTTTGGAGCGTAAGttgaaagaggaggatgagaggagaattGTGGAATACGAGGTGGAGCGAAAGAAGGAGCAGAATGagcagagagaaaaggaggaggggaggaaacgcAGACAGAGAGACTTTGAGGAGGAGCTGAGGCAGATAGAAGAGGACAATAGGcaTCGCCCTACAGgcatggaggagatgagagaaagagaggcagaagaGAAGCTTCAACAAGAGTTTTTCAAACAGCAGGAGCTGATCAGCAGCCtccagagacagatggaggaggagaggagggccttTGAGAAGGTgcaggaggaaaagaggaggaagaccCACCAGTCTCGATGCAGGGCGGCCATCACTATCCAGGCTGCCCTCAGAGGCGTCCTGGCACGCCGGTGGACCAGGGCTGAGCTCCACCGCAGAAGAGAGGAACAAAGaaggtctgaggaggagaggaacaggagggaggagaggtggaggagggaacaggaggagcagcggCTGAAGCAGGAAAAGGAAAACAGAAGGAGAGAGTTGGAGGAGcaagcgctgaagaggaggagcTTAGAGTATGAGAGAGCCAAAGAAGAGGATCGAGTccgtatggagagagagagacaggatgaggaggacagaagaaagagggaggatcaggagaacagaaaggagggagagagaagaaaaggggagaagaagagaaagaagcatgaagaagaggagaagagaaagaaagaagaggagaagagaaggaaagaagaggagaagagaaagaaggaggagaggagagagaaggaggagcagattagggaggagaaagacaagcaagaaagggaggaggagcggagaaaaagacaggaggatgaggaggaaaaGGAGAATGAAAGGAAaagcaaggaggaggaagagattaGGATGGAATCAGATGAGAGGAAACCAAAGAGCCTGCAAAAGCTGGGGACAGGAATAGTGAAGGAGGAAAGTCAAAACCCGAGTGAGGAAAAAGCCAGAGAGGAGAAATCATCCGCCACTGAATGTTCCCCCACTGCCAGCTCTCCCCCCATTGACCCCAGCACCTCAGCCCCTCAGTCTGCCTTTGAGCGTATGAGTGTATCTCTACCAGAGCAGACGGAGCAGAGGAGACTGGCCTGGATGAGGGACTGCACTTCCTGGTCCAAACTCTCCCTGCAGAATAAGAGGAAGCAGCAGCAGGGGGTCAGGacccagaggaggaggggggcgaGGAGGGCCGCTGAGGGGAGCGGTTTACCCCTCCTCTGCCCAGAAACACTCCTTCAGTCTGGGGCCTGGAACTCCCCTCAGGAGGTGACCACAGTTGTTCTGGAGGATCTCCCTGGCTGTAGCCTCTCTACTTTGTCCCAATGCCCCAGACTGCAGACCCTCACCATGAGACGCTGTGGCCTTAAATCCCTGGAGGGCCTCAGTCAATGCACAGAGCTTCGCTACATCGATGTACAGGACAACTCAATCACGTTTGTGGACTGTGAGAATCTGGCTAACCTCCAAGTTCTTCGACTTGGCCGGAACCGTCTGACATCCATCCATGGTCTGGCTGGTGCTGTGGATCTGGACGTTCTGGAGCTCTCGCACAACTCCATCACCCGCATCGGTGGTCTGGAGCCATTGAAGAGGCTGCAGAAGTTATTGTTGGACCACAACCAGCTGATCAGTACTAGAGGACTGAGAGAGGTGTACACGCTGCTACACCTGGACTTGTCTCACAACCATCTGTCCAGTGTAGAGGGCCTGGACAACTGTGCTCTGCTCAACACCCTGGACCTGACGGGAAACAATCTCATTGAGCTACCCAGTCTGAGGAACCAAGTCCTCCTGGTGGAGCTCCATCTGGAGGACAACAGCATCTCCTCACTGGAGGGCCTGACAGCCTGCTGGCTCCCCCTGATGCAGCTCCTCTCTGGGGCCCAAAACAGTATAACACAACTGCCATCACTGTGTCATTTTGTGTCACTGGAGAAGCTGGACATCAGAGACAACTGCCTCTTAGAGCTGCAGAACCTGTGTGAGAGTCTGCAGGGATGTCCACTCCTCCGAGAGGTCCATCTCACTGGGAATCCCCTTCAGCAAGAGTCCATGTGGAGGTCCAGTCTGCAGAGGGCTGTGCCGGGTCTACAGGCCATAGACGGGCAGCCTGTCGGCTCCTCTCCAGCGCTCCCTGGCCCTGGTCTAGTCACGGCCCTGCTGCCTCAGAACAGCTTTCTAGCCTTCTGTCAGGCACAGCTCCAGCAGCTCCACACACTGCAGCACAGCCACACGGCACAACTCAGCGGTGCTCTCCCTCCCCTGGATGCTCTGAGGCTCTCCCTCCAGCTCCATGATGAAGCTGTACAGCTGGCTGAGGAGCACAGATACGCTCACGAATATGGAGACACCAGCATCACCGACAAACAAGATGACAGTCACAGGAGTGACACCGCCAGGGTTAGCAGGATCCCTGCCGAAAAGTTCGATGTAGAGGGTATGGACAGACATGGTGGTGTCATGAACAGGAAGCAACCTGAAAATAAGTCCTTTGGAAGTGGAAACACAAACACCTGGCCACATGTGGTTCccctcatcagcccagccaatgACAACAGTGAAAAGCAGCCTCACCCCCCAGCATACAGATCATTCAGCAGTCTAGGGACTGTGTCCACTAGGCCCGAGTTGAAGCCAGCAACGCCAGCTAGTTACACAAGTTCCAGCTCTACCTTCTCCGAGGAAAAAACGTCCCATGCCACTGCCAAGCCCAGCAGTTCACCCTTCCCCAAAGATCACATCAAGCTGGACCTCAAAAACATGGCAGCTGTGGTGATCCAGTGCCACTGGAGAGGACACAGAGGACGTCAGAGGATCCAGCTGCGTCCACCTCCAGGAGAGGAgcaaggaggaagaagaggaagagagaggggaagagtagaCACAGGACCCAGCCATACTGGGTCAGAGCAGAGCCGTCTGGAACCAGATTACGCTGCCACTGCCATCCAGGCGGTTTGGAGAGGCTTCACCCTGAGGAGGAGGCTGGCTGCTGCTCTGGCCCAGGCTCGGGGCTTCAACCCCGGGGATCACGAGGCCTTCGAGGAGGTGAACGTGGATGAATTTGTCTTTGATGAGATGGCACTAGAGAGAGACTGGATGATGACTTCGCTGCTGTCTGACGATTCACCTCCCAAAACCCTCCTTCATCCTCCTCCGTTCCCAGACCAGCTGCTTGGTCCAAAGCGTCCTCTGAATCTTCCAAATGCCAACCAGCAGACCAGCCCACCTGTTCTTCTGTGGAAGCCCAAGCAGGCCTGGATGGGTGGGGAgagagcagagcctgctgagcatagAGTTTCCCTTGACAGCATCAGCAGAACTAAATCTCCTGTCTCTGCGTCAGGGCTCAGTGGTCTTTCTGAGAGATCTCCTGCTTCTGTGTCAGGGCTCAGTGGTCTTTCTGAGAGATCTCCTGCTTCTGTGTCAGGGCTCGGTGGTCTTTCTGAGAGATCTCCTGCTTCTGTGTCAGGGCTCAGTGGTCTTTCTGAGAGATCAGAGAAGATTCTGGAGGAGTGGGGGTTCAGAGACAGCCACACTGCTCTGATGATGCTGAAGAGAGCTCAGAAGATGAAGTCTAAGAAGCAGAGGCAGAGAAAACTATTGGACCCAACTGTACGCCTGGCCCTTTTCAGGAACCATAGCAACCAGCATGCCCCTATGGAAGCACCAAAGAAGCCCTCtccagagaggagagactacaTTAAAGCTCACCAGGCAGAACTAGCCCTGGAGGGAACAGGCAGATTGGACCAAACACGGTTAAACCAGCAAGCACCAGGGAGGGTGGACCAAATGCTGTTGAACCAGGACGCAACAGAGAGAGTGGACCAAACACTGGTGAACCAGGAACGCACTTACCAGTGGCTCCACACCCAGCCTGTGCACTCTGACAGCAGACGCCCTGAGAGtgaTGGTTTCCTCCCAGAGATTGACCCAGACATACTGAAAGGAGGCAGAGTGCAGCTCGTGgctgTAGCAGGGTACAGAGAAGGTCCAGACCAGGCCCCAATGTCGCGGGCCAGCGGAACGTCCAACTCCCCGCCTCACAAAGAACACAATGAAGCTCAGAGAAACTTTTTGGGGCAACTAAACAAAGAAGCACCTTCTCCCCAAAGAGTGACCTCTGCCTCATCTAAAAAGGAGCGCATGTCTTTCCGGGATAACCCTGTCCAGATGAGTGGTGGCTGGGGAGGGGGCAAAAAAAGGGACAAACTGCACAAGTAACAAGACATTTGTTAATTACCAAGAAACTGGTTTAGCTTTATTCACCGTATGTCCAAAACAGTAAGCATGACAACCATTATTCTGTTCACAGTAACGTTTTGACAGCCCCATACAGTATGTGCATTATGTTGACATTTCATTCATTCTGCAACGTTTAACTTTTCTCCCCTCAAAAGTTTTGATTGTCATTAATCTCCTATACTAAAATGTCTTGCAGCTGCCTTTTCGCTCTCAGATCTGGCTTGGCCTCCGTGGGTCTTCTGAAAATTAATTAAAAGCAATGGGAGAAGCCCAGCCCAAATATCTGCAGGCGTTTTCATGCTGGTCATTATGCATGGATATCGCTGCCTTAATGCGACCTCAGCCAACACCGGAACGCATGGAGCAAAGTCCCAAACGCTCAACAAATCACACGCTTAATATGCAGACAATGGTTCGAAATAAGAAACAGAACATTTCTATTCTAATTGTTAGGATGTTTGTATTTTGATTTCATTTAGATTTATTTTACAAGATTTCCAGACCAGTCTCTGCTACTGTGGTATAGTAGCCTTTGGTAAATGAAAATATAGAATTTAGAATTGGGTCCCGTGTGTctgagttggtagagcatggcacttgcaacaccagggttgtgggtttgattcccatggagGACCAATATGAAaagaaagtatgaaaatgtataaagtcgctctggataagagcagctACTAAAATGTACGTGTAGAAGGTGTCTTATCTTAGATGTTGCATGTCTAagaaaaaatatgattttttaaTGCTACTTATTTCTTGCTGAAGTTGATGAAGTGGCCCTTTTACTCAGCTGTTAATAATCAAGGtaaatacatttgagattctaaaataatgattaaattcaagtttcttttttgattttactatcatatacactgagtgttcaaaacattaggaacaactgacataggtgaatacaggtgaaggctttgatcccttattgatgtcacttgttaaatccacttcaatcagtatataTGAAAGGGAGGAGAATacttttttaagccttgagacaattgagacatggattttgcatgtgtgacattcagagggtgaatgggcaggacaaaagattgaagta

Function

symbol description
lrriq1 Predicted to enable protein kinase binding activity. Predicted to be active in cytoplasm. Orthologous to human LRRIQ1 (leucine rich repeats and IQ motif containing 1).

NR:

description
leucine-rich repeat and IQ domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580318.2 True 6029 mRNA 0.50 27 91691853 91740829

Neighbor

gene id symbol gene type direction distance location
alx1 LOC106561592 coding downstream 18123 91668397 ~ 91673730 (-)
LOC110499699 NA coding downstream 67649 91606745 ~ 91624204 (-)
nts LOC106561634 coding downstream 110547 91560700 ~ 91581306 (-)
eif4g2b LOC106561567 coding downstream 437012 91239744 ~ 91254841 (-)
lyve1b LOC106561566 coding downstream 461649 91227098 ~ 91230204 (-)
lrrk2 lrrk2 coding upstream 39372 91780201 ~ 91837180 (-)
LOC110499762 cbpa2 coding upstream 280926 92021755 ~ 92027773 (-)
LOC110499841 LOC106561606 coding upstream 412555 92153384 ~ 92190372 (-)
LOC110533906 NA coding upstream 456507 92197336 ~ 92202031 (-)
LOC110502383 LOC106561607 coding upstream 469501 92210330 ~ 92228748 (-)
G203829 NA non-coding downstream 191296 91464310 ~ 91500557 (-)
G203780 NA non-coding downstream 293371 91398064 ~ 91398482 (-)
G203163 NA non-coding downstream 453039 91238517 ~ 91238814 (-)
G203162 NA non-coding downstream 453416 91238230 ~ 91238437 (-)
G202932 NA non-coding downstream 764841 90850730 ~ 90927012 (-)
G204018 NA non-coding upstream 18909 91759738 ~ 91801240 (-)
G203975 LOC106561596 non-coding upstream 30473 91771302 ~ 91773128 (-)
G204050 NA non-coding upstream 110488 91851317 ~ 91852018 (-)
G204052 NA non-coding upstream 112466 91853295 ~ 91853597 (-)
G204096 NA non-coding upstream 161128 91901957 ~ 91905169 (-)
G203915 rassf9 other downstream 100804 91589212 ~ 91591049 (-)
G202279 NA other downstream 1250428 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 2081963 89606837 ~ 89609890 (-)
G198912 NA other downstream 4365384 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 4787897 86903036 ~ 86903956 (-)
G204024 NA other upstream 46358 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 657231 92398054 ~ 92443838 (-)
G205192 NA other upstream 1221215 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 2571595 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 2572561 94313390 ~ 94313918 (-)

Expression


Co-expression Network