XLOC_020727


Basic Information

Item Value
gene id XLOC_020727
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2529254 ~ 2545551 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042286
TGAAGTGTGTTTTTCCAATTCAATTTAGAGTGTGACCCCAAATCCAGACCTCCATGGGTTAATAAATGTGATTTCCACTGATAATTTCttttgttgtcagcacattcaactatttaaagaacaaagtattaAATAAGAACAGTTACTTCATTTAGATCTAGGATgttaagtgttccctttatttgtTTGagcagtttgtgtgtgtatatatatggaaAATCATTAGGAAATCCTTGATTAAGTTTCTGATGGAGCTGAAGAACATGATTTCTCCTTTGTATGAACTCTGAGATGGCTCTTCAGCACTGAAGGCCTCAAAAATGTTTTGTCGCACTGAGcacatttgtgtgttttcactccagtgtggatcctcgtgTGCTGATGAAAATGTGATGATTgtttgaaactctttccacagcgagtacatgtgtacggtttctctccagtgtgaatcctctcgtgTGATTTCAGAGAGTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042286 True 478 lncRNA 0.37 2 2529254 2545551

Neighbor

gene id symbol gene type direction distance location
XLOC_020724 NA coding downstream 4753 2471264 ~ 2524501 (-)
XLOC_020723 NA coding downstream 32397 2466339 ~ 2496857 (-)
XLOC_020722 NA coding downstream 46765 2466273 ~ 2482489 (-)
XLOC_020721 NA coding downstream 181218 2266206 ~ 2348036 (-)
XLOC_020720 NA coding downstream 261701 2257923 ~ 2267553 (-)
XLOC_020728 NA coding upstream 23626 2569177 ~ 2646010 (-)
XLOC_020729 NA coding upstream 53468 2599019 ~ 2623874 (-)
XLOC_020730 NA coding upstream 56666 2602217 ~ 2611809 (-)
XLOC_020731 NA coding upstream 157251 2702802 ~ 2791490 (-)
XLOC_020732 NA coding upstream 216539 2762090 ~ 2783884 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1576402 NA non-coding NC_048582.1 CM023236.2 67771228 ~ 67771521 (-)