slc6a15 (LOC106561596)


Basic Information

Item Value
gene id slc6a15
gene name LOC106561596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91754959 ~ 91779981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576786.2
GCGAAGCACTTGTGTCTGTTTCATACAACACCACAGCGGCGATACAGCACCATATACGCATTAGCCTACAAGTGATGATGTCTGCCCCGTGTATGTGCTTCTGTCACAATTTCATTCCTTGATACGCATCATTCCGAAAAGGACCAACATCCCCATCTTACTGAAGACGACTAAAGCTTTTGGTGATAATGAAGAAATAAACAACTCCTTCACAACCCTCCATCACACACCTCCAATACAGAGTCTTTATCCGACAGTCCACCTTTAAGCCCTCAGAACTAAACTGCCTCCCGCTACCAGCCCAAAGACATTCTGCCCCActgctgctctctgctctctgctttaTCAAATGCCCAAAAACAGCAAGGCCGTCAAGAGAGAGCTTGACGACGATGTCACAGAGTCTGTCAGGGACCTGCTATCCAATGAGGACACGTGTGATGATTCCTTCAAGAAGAGCTCGCTGATTGTGGGTGGCAGCGGAGGTGCTGGGGAAGGAAAGGACCTTAATGGAGACATGGACGTGGAGGATGGAGGCTCGGACGCAGAGGATGATGCAGCGAGACCAGCCTGGAACAGCAAGCTGCAGTACATCCTGGCCCAGGTGGGCTTCTCTGTAGGCCTGGGCAATGTCTGGAGATTCCCCTACCTGTGTCAGAAGAACGGAGGGGGGGCGTACCTGGTTCCCTACCTCATTCTGCTGATTGTGATTGGCATCCCCCTGTTCTTCCTGGAGCTGTCAGTGGGGCAGCGGATCCGCAGGGGCAGCATCGGGGTGTGGAACTACATCAGTCCTCGCCTGGGGGGCATCGGTTTCGCCAGCTGTGTGGTGTGTTTCTTTGTGGCCCTCTACTACAATGTGATTATAGGGTGGAGTCTCTTCTACTTCTCCCAGTCCTTCCAGCAGCCTCTGCCATGGCACGAGTGTCCCCTGGTCAAGAACAAAACCACTAcgtacGTAGTGCCTGAGTGTGAGAAGAGCTCGGCCACCACGTACTACTGGTACCGTGAGGCTCTGAACATCTCTGACTCCATCTCTGAGAGCGGAGGCCTCAACTGGAGGATGACCATCTGTCTGCTGGCTGCCTGGTCCATGGTCTGCCTCGCCATGATCAAGGGCATCCAGTCCTCTGGGaagGTGATGTACTTCAGCTCGTTGTTCCCTTACGTGGTGCTGATCTGTTTCCTGGTTCGGGCTCTGCTCTTGAAAGGCTCTGTGGACGGCATCCGACACATGTTTACCCCCAAGttGGAGATCATGCTGGAGGCCAAGGTGTGGCGTGAGGCGGCCACGCAGGTCTTCTTCGCCCTGGGCCTGGGCTTCGGAGGCGTCATAGCCTTCTCCAGCTACAACAAGCGGGACAACAACTGCCACTTTGACGCAGTGCTGGTCTCCTTCATCAACTTCTTCACCTCTGTGCTGGCCACCCTGGTGGTGTTTGCTGTGCTCGGCTTCAAGGCCAACATCATGAACGGCAAGTGTGTCGCGCTGAACACTAAGAAGATAGTGGGTTTGCTGGGGAACGAGATCAGCCGTGATCTGATCCCCCACCACATCAACTTCAGCGCCACTGTGAGCGCTGAGGACTACCAAAAGATGACTGTGCTCATCAGAGAGGTGATGGAGAAGGATTACCAGCTTCTGGGTCTGGGCTCCTGTAGTATCGAGGAAGAGCTCAACAAGGCAGTGCAGGGTACAGGCCTGGCCTTCATCGCCTTTACAGAGGCCATGACCCACTTCCCTGCGTCTCCCTTCTGGTCTGTCATGTTCTTCCTGATGCTGGTTAACCTGGGCCTGGGCAGCATGTTCGGAACCATCGAAGGCATCATCACACCCCTGGTGGACACCTTCAAAGTCCGCAAGGAGTTCCTCACAgTGGGCGTCTGTCTGCTGGCCTTTTTCATTGGCCTGCTGTTCGTCCAACGTTCTGGGAACTACTGGGTGGCCATGTTCGATGACTACTCTGCCACACTGCCTCTGCTCATAGTGGTCATCCTGGAGAATGTGGCTGTTGCTTGGGTCTATGGGACTGAcaagtTCTTTGAGGATCTGAAGGACATGCTGGGCTTCACTCCGTTCCGGTTCTACTACTACATGTGGAAGTACGTGACCCCCCTGCTGCTCATCCTGCTGCTGGGCTCCAGTGTGATCCAGCTGGGAATGACCCCACCCAGCTACAGCGCCTGGATCAAGGACCTGGCCAGTGAGAAATCCCTGAGCTACACTCCGTGGGGCCTGGCGGTCTGTATCTCCCTGGTGGTAATGGCCATCATGCCCGTGCCCGTGGTGTTCTTCCTCCGCTACTTCAACATCATCGACGAGAACGCCGGCGTCGTCTCCACCATCTCATACAAGAAGGGCTGCATCATCCAGGAGATAGCCAGGCCCGAGGAGGAGGACGACGCCAGCCTCATCCATGCCAAGTCGCCCTCGCCCATGCCCGGCAACAGCATCTACCGCAAGCAGAACGGAGGGGTTCCCGATTCCACCCCCAACGGCCGATATGGTATTGGTTACTTGATGGCCGACATGCCGGACATGCCCGAGTCAGACTTATAGCATGTTGTTTCTGGTACTCCGCCCTACTGGCTGGCCAACCAATCCCTCTTTTGCGTGCGTTTAGTCGTGGGAATCGTCATCTGCATATTTTTACTCTTATATTTTTACTGTATATTCTTTATAGATATCGTAGCTGCTCCCCTTCATGTTGTCCTTTTCCCGTTTTGCTGTAAAAACAACTAAAAAGGTGTGCACaatgtatactgtacatactatcTCCTTTTGTCTTCCCCACCCAGTCCTTCCTTGGCtcagtcccaaatggaacccctcAGCCCCGTCCTGAAGCTCTTAGTTGACAAGACAGTACAGTATTGGTGTAAGCAATAAGGTGGACACTCCACCAAGCCTGCTATAGTTGCTCAACAAGGGACTTAGGCTAGGGACAAGTGAAGATTAGGTTTGGGgttaattccatttcaattcaggaagtaaactgaaattaaaAATGTTCTCATAGAGGAAGCGATGTGAatttttcagtttacttcctgaatcaccaaattgaaatggaattgaccccaaacctgAGGGATAGATTTGGGACTGGGCCTTTTGTCTGTCTCTGGAAGATGCAGGTTGAGTGTTGTCCCCCCTGGTCCTGCTGTAGAATGCCTGTGTACATTATGACCTCACCTCTGGCCCAGAGTTCTGAGATTAATAGCAGCGCAGCCTCTTTGGGTGACATACGTGTTGGCAATGATGCAATACTGACCACATTTCTTTAGTGTAAGTACAATATAGTGCAAACAGCAAAAGGATGGCATTGAAACTGAACCCTCCCAAccaaaccccccccaaaaatgtgccTAAATAACTTATGATATTTGTTTATAGAATACATGGTGGACGTTGTATATTTAAGGTATTCTGTAAATATaaatattataaatattataaatatatttagCCTATCTGAATAGTTTGGATATCAGAACACCTTGTTTTTTGGAAAGAAGTGCTTCAAATCCTTACAGCTGATTCCATTTTTTGTTTACTGATGTGCTGTCAATCTATGTAGAGGTTTGACCCCTCTTGATAAActtgtaaatatttttttcctccaTGAAATGGCTTCATAACGCAATGTATTTTTTCCCCCTGTTGAAATTAAAGATCAAACTTGGTCCATACTGGGCACTAATGTC

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576786.2 True 3708 mRNA 0.50 12 91754959 91779981

Neighbor

gene id symbol gene type direction distance location
rassf9 rassf9 coding upstream 163829 91582584 ~ 91591130 (+)
mgat4c LOC106561589 coding upstream 211194 91366282 ~ 91543765 (+)
LOC110499641 LOC106561583 coding upstream 515222 91235465 ~ 91239737 (+)
cep290 cep290 coding upstream 541690 91157461 ~ 91213269 (+)
kitlga LOC106561562 coding upstream 783641 90938346 ~ 90971318 (+)
LOC110499735 LOC106561597 coding downstream 56833 91836814 ~ 91852352 (+)
LOC110502363 LOC106561595 coding downstream 73871 91853852 ~ 91933354 (+)
LOC110502371 LOC106561599 coding downstream 157171 91937152 ~ 92008067 (+)
smc1b LOC106561601 coding downstream 248453 92028434 ~ 92049230 (+)
LOC110502379 NA coding downstream 277581 92057562 ~ 92063708 (+)
G203415 NA non-coding upstream 110937 91618362 ~ 91644022 (+)
G203281 NA non-coding upstream 341411 91412013 ~ 91413548 (+)
G203251 NA non-coding upstream 385956 91368559 ~ 91369003 (+)
G203197 NA non-coding upstream 475000 91279751 ~ 91279959 (+)
G202844 NA non-coding upstream 500170 91252360 ~ 91254789 (+)
G203547 NA non-coding downstream 42338 91822319 ~ 91823796 (+)
G203559 NA non-coding downstream 73232 91853213 ~ 91853577 (+)
G203579 NA non-coding downstream 81412 91861393 ~ 91861963 (+)
G203561 NA non-coding downstream 138889 91918870 ~ 91919819 (+)
G203629 NA non-coding downstream 210891 91990872 ~ 91993704 (+)
G203438 LOC106561592 other upstream 83060 91668836 ~ 91671899 (+)
G203414 NA other upstream 130666 91622001 ~ 91624293 (+)
G202185 NA other upstream 1037538 90716942 ~ 90717421 (+)
G203551 NA other downstream 46868 91826849 ~ 91847400 (+)
G203646 cpa2 other downstream 241774 92021755 ~ 92024742 (+)
G204240 ckap5 other downstream 377294 92157275 ~ 92159903 (+)
G204593 NA other downstream 901365 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 1057443 92837196 ~ 92839440 (+)

Expression


Co-expression Network