LOC110502371 (LOC106561599)


Basic Information

Item Value
gene id LOC110502371
gene name LOC106561599
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91937152 ~ 92008067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959047.1
CATGACGCTGGGCTGTTGTGGGCAACACTCCTCTCGCTTCCTCATGCAACTGCGACCCTAAGCAGCGCACCGTTTTAACGGTTGCTTCCTTCTTTTATACGACCGAAAAAGGACTGTTTAACGGGAGATTTCGACGATGAGTAGCTTTATGAATATGGCGTGTATTGGAGACTTTGACCCGTTCACCGCTGCCATTCCCGCCACCAAAGTTGAGCTCACTGTGTCGTGTCGAAATCTCCTGGACAGAGACACATTCTCCAAATCAGACCCAATTTGTGTGCTGTACACTCAAGGAATCTCCAACAGGGAATGGAGAGAGtTTAGTCGGACAGAGGTGATAGACAACACACTGAATCCAGACTTTGTCCGTAAATTCCTCCTGGACTACTTCTTTGAGGAGAGGCAGAATCTCCGCTTTGACCTGTACGACCTCGACTCGAAAAGTGACAACCTGTCTAAACATgACTTCCTGGGCCAGGCGTTCTGTACCCTGGGGGAGGTGGTAGGCTCCATGGGAAGCCGCATGGAGAAACCTCTCATTGGGATTCCAGGGAAGAAGTGTGGAACTATCATAGTGAGAGCAGAGGAGCTGAGCAATTGCAGGGAGTCAGTGATGCTGCAGTTCTGTGGGAACAAGTTGGACAAGAAAGACTTCTTTGGGAAGTCTGATCCTTTTCTGGTCTTCTACCGCAGTAATGAGGACGGATCGTTTACTATCTGCCATAAGACAGAGGTTGTAAAGAACACTCTGGACCCAGTGTGGCAGGCCTTCAAGATCCCTGTCAAGGCCCTGTGCAACGGCGATTATGATAGgagCATAAAGGTGGAGGTGTATGATTGGGACAGAGATGGAGGGCATGACTTCATTGGGGAGTTCAGCACCAGATACAGGGAGATGTCAAGAGGCCAGTCACAGTTCCACACCTATGagGTGGTAAATCAGAAGAAGAgagacaagaagaagaagagataCCTCAACTCAGGAACAGTAACCCTGCTGTCCTGCCTGGTGGACATGGAGCTCACCTTCCTGGACTACATCAAAGGGGGGACTCAGATTAATTTCACGGTGGCAATTGATTTCACAGCATCAAATGGCAACCCGTCTCAGCCCACCTCCCTCCACTACATGAGTCCGTACCAGTTGAATGCCTACGCCATGGCTCTCAGGGCCGTGGGGGAGATCATCCAGGACTACGACAGTGACAAGATGTTCCCTGCTCTGGGCTTCGGAGCCAAGCTGCCCCCGGACGGACGCGTCTCGCACGAGTTCGCTCTgAACGGGAACCCTCAGAACCCATACTGCAGTGGGattgagggagtgatggaggctTACTACCAGAGCCTCAAGTCTGTCCGCCTCTACGGACCCACACACTTCTCCCCTGTTATCAACCACGTGGCCAGgtatGCACAATCAGTGAAAGACGGCTCCCAGTACTTCATCCTCCTTATCATCTCGGACGGCGTCATCACCGACATGGCTCAGACCAAAGAGTCTATCGTAAATGCGGCTACTCTGCCCATGTCAATTATAATTGTCGGGGTTGGACCGGCGGAATTTAATGaaATGATTGAGCTTGATGGAGACGAAGAGAGGATTTCATCTCAAGGGAGGTTcgcagagagagatattgttCAGTTTGTTCCGTTCCGTGACTACATCGACCGCAGGGGGAACCACATTCTCAGTATGGCCCGTTTGGCCAAAGAGGTCCTGGCTGAGATCCCTGACCAGTTCCTCTCCTACATGAGGACCAGGGGCATCAAACCAGGCCCCTGTCCCCCTGCCTACACCCCCACCCCTGCCTTGCACCCCCTCTTCACCCGACGGGTCAGCCGAATCTGAAGGGTAAGACGCCCCCCCCGACCTCGTCCTCTtttgcttcttcttcttcctcactGGAGTCGTTTCCACGCTCATGTTGCACCTTTGTGGACTCTGGGATTCCATCATCCATGGCATTGGTCAGCCCTTTCTGTGGAGAGGACAGACCGCCATCATCCCTCATGAAGGACTTCTTCTGAGAGGTCAGAAGTTAGAGGTCAGAGGACGCAGTTTACTGGTCTGACCCAGGAGGTGGGTGAGTCACTGTAATTGACGAGCCAGGAGCAGCATCCAATCTgtggagaacctttcagaagcgCATTTCTGATCTGTTATTTCTACGTCCTGCTCTTCCTCTCAACTTCACTTCTCTTTCACCAACAGTCTCTTTCTAAATGTTTACAAAAGTTGAGGATGACGAGGAGGATTCATACTCGTGGACACATTTTTATTTCTCTCTGATTTGTACTCCAGATGCTCTCTGGCTCTCCTTTTTTTAGCCACAGAGACTGGTGGTAGCGATGATGAAGAGGacgaagatgatgatgatgctgatgatgctgatgatgacAAGCCCAGGAGCCACATCCCATGTGTGGTGTTTATTTCTTTTTTTACGGAGCATGTTGTAGTCCTAGTAGAGAAGCATGCAGTTAAAGTCCTGCACTCAGGGCCTCCTAGCTGATCATTTATTTTCCAACTACCACCTTTGAAGACAGTACCTTCACCACCTATAATCTTCCCACTATATTACGCTCTGTTGTCCGCCTACCTTGACTCAAAGGGGACTTCCTTCAGAGTCTGGTCCTATCAAATACAGCAGGGACTAAACCAGCCTTATTCtctttgtgtcccaaatggcaccctattccctacatagtgcactacttttgagagcCCCGGTCAagcgtagtgcactatataaagagTAGGGTGCCTCTTGGGATGCAGAATCTATCCATTGGGTACATTCACAGTCGCCATGCTCACAATAATTCTGGAATAGTGGAATCTCCATCCATGCATGGGAGTTAAAAACATACTTACCAGTTAGTTACACCACCACTTCCATGTGTGTCCTCTGACTCTGGAGTTCAGTGAGAaaatgttgttttgtattttcagGAGCATTCTCTCTTTAGTTTCTACCTCTTGCTTCACATCATGTCACTAAACcttgtggatggatggatgtgtgttttggaaaGGCAGGATGTTAAGCAGTAATATTTCAGTTTACCTTTTGGTTCACAACGCCGCCTTTGTCTCTCACTGAGTGAAAACATTTTACAGTTACGTTGAACATTTTACTAgcctacactaccggtcaaaagttttagaacatctactcatt

Function

NR:

description
PREDICTED: copine-8-like

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959047.1 True 3182 mRNA 0.49 20 91937152 92008067

Neighbor

gene id symbol gene type direction distance location
LOC110502363 LOC106561595 coding upstream 3798 91853852 ~ 91933354 (+)
LOC110499735 LOC106561597 coding upstream 84800 91836814 ~ 91852352 (+)
slc6a15 LOC106561596 coding upstream 157171 91754959 ~ 91779981 (+)
rassf9 rassf9 coding upstream 346022 91582584 ~ 91591130 (+)
mgat4c LOC106561589 coding upstream 393387 91366282 ~ 91543765 (+)
smc1b LOC106561601 coding downstream 20367 92028434 ~ 92049230 (+)
LOC110502379 NA coding downstream 49495 92057562 ~ 92063708 (+)
borcs5 LOC106561602 coding downstream 57531 92065598 ~ 92072317 (+)
LOC110499798 LOC106561603 coding downstream 78247 92086314 ~ 92116411 (+)
LOC110499816 LOC106561604 coding downstream 114993 92123060 ~ 92129748 (+)
G203561 NA non-coding upstream 17333 91918870 ~ 91919819 (+)
G203579 NA non-coding upstream 75189 91861393 ~ 91861963 (+)
G203559 NA non-coding upstream 83575 91853213 ~ 91853577 (+)
G203547 NA non-coding upstream 113356 91822319 ~ 91823796 (+)
G203503 NA non-coding upstream 168000 91768760 ~ 91769152 (+)
G203671 NA non-coding downstream 57193 92065260 ~ 92065481 (+)
G203674 NA non-coding downstream 66561 92074628 ~ 92074860 (+)
G203679 NA non-coding downstream 70655 92078722 ~ 92078933 (+)
G203697 NA non-coding downstream 91290 92099357 ~ 92099781 (+)
G204211 NA non-coding downstream 110155 92118222 ~ 92118699 (+)
G203551 NA other upstream 89752 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 265253 91668836 ~ 91671899 (+)
G203414 NA other upstream 312859 91622001 ~ 91624293 (+)
LOC110499641 LOC106561583 other upstream 699161 91235465 ~ 91239737 (+)
G203646 cpa2 other downstream 13688 92021755 ~ 92024742 (+)
G204240 ckap5 other downstream 149208 92157275 ~ 92159903 (+)
G204593 NA other downstream 673279 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 829357 92837196 ~ 92839440 (+)
G205404 NA other downstream 1363326 93371393 ~ 93388550 (+)

Expression


Co-expression Network