smc1b (LOC106561601)


Basic Information

Item Value
gene id smc1b
gene name LOC106561601
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92028434 ~ 92049230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576837.2
CACTCCGTGGCGCTCTTCTGAGGAAAAACTTGACAAAAACTGTTTTTGAAGATCTAGCTGCCCAAAATGGGTTTTCTAAAGCAGTTGGATGTGGATAATTTTAAGTCTTGGCGAGGGAAGCAAGTAATTGGACCTTTTAAAAGGTTTAACTGTATTATTGGCACAAATGGATCCGGTAAGTCGAACGTGATGGATGCCCTGAGCTTCGTGATGGGGGAACGGGCAGCGACTCTCCGCGTGAAGCACACCAGGGACCTCATCCACGGAGCCCACATTGGCAAGCCGGTGTCCACCACGGCCAGCGTCACCATGCGCTACTGCGACGACAACGGAGAGGAGCTCAACTTCTGTAGGAGCATATCGGGGGACTCCTCTGAGTATCGCATCAATGGCAGACAAATTACCCTTGCCAAGTACACAGAGGAACTGGAGAAGATAGGCATTGTGACTAAAGCTAGAAACTGTCTGGTATTCCAgGGGGCGGTGGAGTCCATCGCCATGAAGAACCCCAAGGAGCGGACCAAGATGTTTGAGCGCATCAGCCAGTCTCTGGAGCTGTCTGATGACTATGACAGGAAGAAGGAGGCTTTGCAGAAGGCTAAAGAAGACACGCAGTTCCACTTCAACAAGAAGAGGACAGCCGCCGCAGAGAAGAAGCAGGTCTCCTCAGAGAAAGTGGAGgCCCAGAAGTACCAGGAGTTGGTGGACGACCTGAACCAGGGGAGGCTGCAGCTAAACCTGTTCCAGCTGTACCACAACCAGCAGGGCCTGAGTGCCCTGTCAAAGACCCTGAGGAAGAGACAGGAGGCTGTGGCCGGTCAGAAGACAGGACTGAATGGGTGGGAGCAGAGCGTCAAGGCCCAGAAGAAAGAACATGGACGCTTTACCAGAGAGCTGCAGCAGATTGAGAAGGAGATCCGtgGGCAGGAGCAGACCCTGTCCCTGCGTCGGTCCCAGTACATCAAGGCCAAGGTGAATACATCCCACCACCTAAAGAAGGTAGATGATACCCGTGGGGCCCTGGAGAAGAGCCAGAGGATGGGTGCCAAGAAAGAGGAGGAGCTGGCTGAGTTCCATCAGGAGCTCCAGGAGCTGGAGAGGGCCTGGAGGGACTATGAGAGACATGCCCAGGAGGAGTTGACCAACCGGAAGGCTGACATACAGctggaggaggaacagTTGGAGCGCTATAAGGAGCTGAAGGAGCTGGCCAGGAAGCAGGGGGCCCTCCTGTCCCAGCAGGCTAAGAAGATGCACTGGGAGGTCAAGGCTGACCACCAGAAAATCGAGTTTGACCAGCGGAGGAAGAAAGAAGTGGAGGTAAGCATTAAGCACAGCCAGACTCAGCTGGGGGACTTCACCAGGAGAGCAGATAAACTGGAAGAGTACACCAACACCTGCAAGAGCTCTCTGGAGGAGTCTCGTCAGCAGGAGGAGGTGCTGTCTGCGGAACtgcagagagggagggtgaggggggaggaggtgaaCCAGGAGTTAGGGGAGGTACTGGGAGAGCTGCAGAACGCCAGGCTGGACAGCCAGGAGAGTAAGAGGCAGCAGCAACGCAACGAGGTCCTGGAAAACCTCCTCAGACTCTACCCTGACACACTGTTTGGTCGTCTGGTGGACCTGTGCAGCCCCATCCATAAGAAGTACCAGCTGGCCGTCACCAAGGTGTTTGGACGCTACATGAACGCCATAGTAGTGTCGTCAGAGAAGGTGGCTCGGGACTGCATCCGCTTTGTCAAAGAGGAGAGGGCCGAACCAGAAACCTTCTTACCCATAGATTACCTGGACGTGAGCCCTCTGAATGAGCGGCTGCGTGGGGTGCGTGGAGCTAAGATGATGGTGGACGTGGTGCAGTGTTCTCCTACCGCTCCTCAGCTGAAGAAAGTCATCCAGTTTGTGTGTGGCAACGCTCTTGTCTGTGAGACGCTCAAAGAGGCCAGAGCCATCGCCTTCGACGGGCCTGAGCGACTCAAGACGGTGGCTCTGGACGGTACCATGTTCTCCAAGTCAGGGGTGATCTCTGGGGGCTCCAGCTACCTGCGGAGCAAGGCCCGGCGCTGGGACGAGAAGGACATGACCAAGCTGAAGGAGCTCAAAGAACAGCTGACTGCAGAGCTACGTGGTCTGGTGAAGCTGAAGCGTAAGGAGCCTGAGCTGAAACAGATCCAGTCTCAGGCTCAGGGGGTTCAGACCCGTCTGAAGTACTCCCACACTGAACTGGACACCCTCCGCAAGAAGAGCATTCCCAACTGCCACGCGGAGATGTCTCGCCTGGAGGCTGAGCTGGCCAACGTGGAGTCTCAGCTGGAGATGCAGAAAGAGAACAGGGAGATCAAGGAGCTGGAGATGAAGAAGCTCCAAGACAGGATCAACCAGATGGAGGACGTGGTGTTCTCAGACTTCTGTGCTGAGATAGGAGTGGCCAACATCAGGGAGTATGAACAGGAGCATCTCAAACAGCAGCAGGATGTAGACAGGAAACGGTTGGAGTTTGAGTCTCAGCGGACCTGTCTGAAGGCCCAGTTGGAGTATGAACAGGGTCAGCTGGAGCAGCAGAGGAAGAAGATGAAGAAAATAGAGGAGACCATCGCCTTGGAGCAGTGCAGAGTGGAAGAACAGAAGCAGgaggaggagaagctgctggtggtgatggaagAGAGTCAATCTAAAGTGTTGGATCTGAAGAATCATCTGCTGGAGAAGAGGACCCAGGCTTCTGACTCTAAGGCCCAGGTGGACCAAACGATGAAGAGCCTTCAGGAGAGCTCCAGAGAGCAGGTGAAGCTGCAAAGGGAGGTAATCTCAGCTGAGACAGCCCTGGAGCAGTTGAGGATCTGGAAACACAATCTGCTGCTAGGTTGTAAGATCCAGGGCCTGCCCATCACGCTGCTGTCTGGCAGCTTGGACGAGATCAGTGAGGTGCAGCTGGACTCAGAGTCACTCACAGAGAGCACCTGCACCACTATGGACATCTACGAGAGAGAGGCGCTGATGGTCATCGACTACTCTGGCCTGGGAGCTGAGCTGAAGGATCTTGCAGGGGAGGAGGTGGACCCCCAGGTAGAGCGTCTTAAGGAGACAGTGTCCTCTCTAGAGGGGGTCCTACAGCGCTCCACAGCCCCCAACCTTAAAGCCCTGGAGAAAATGAGGGTGGTCAAGGACAAATTCCAGGGGGTGGTGGACGCGTTtgatgccagcagcaaggcagcCAGAAGGAGTAACCAGGAGTTTGAGCAGGTTAAAGCCAAACGCTTCAGACTCTTCAGTCAGTGCTTTGAACACGTCTCTGTCGTCATCGACCAGATCTACAAACAACTGTGCAGGAACACCAGTGCTCAGGCCATTCTGAGTGCTGAGAACCCAGATGAGCCCTACCTGGATGGCATCAATTACAACTGTATTGCTCCTGGGAAACGCTTCATGGCCATGGACAACCTGTCTGGAGGAGAGAAGGCCATCGCTGCCCTGGCTCTGGTGTTCGCAATACACAGCTTCCGTCCAGCTCCGTTCTTTGTCCTGGATGAGGTTGATGCAGCCCTGGACAACACCAATATTGGCAAAGTGACCAGCTTTATCAGGGAGCAGTCGAGAGAGAGCCTCCAGATCATCGTCATCTCTCTGAAGGAGGAGTTCTACTCTAGAGCTGACGCTCTGCTGGGGGTCTACCCTGAGtTTAACGAGTGCATGTTCAGCCGCATGCTGACGCTGGACCTAAGTCCCTATCCCCTGAACGAAGAGAacggaacagagagagagaaggagatgtaaagaaagaaagaacgaacAATCAAATATATACTTTATTGGCCTGATGTGATAGACCCTGACAGCTGATTTCCTGTTTCTCTTGGGATAGTATTAAACCAATCTTCAATTGATTGCCAAAAGCATTCACCTAAAATGTTTGTTTATTAATGTTAATATATTGCTTATTGTTACGTTGATTTTTATTCCGGAGGTTTGAGGATGTTGTACTCCCTCTCAATACTTTTCTATCATTGTTTAGCTTGAAGCATTTTAATATACCAGGGTTCGATTTCACTGTTTTACTTTATATTTAATATAAATCGTTTCCTCTtta

Function

NR:

description
structural maintenance of chromosomes protein 1B-like

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0006281 DNA repair biological_process
GO:0008278 cohesin complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K06636 SMC1; structural maintenance of chromosome 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576837.2 True 4090 mRNA 0.53 25 92028434 92049230

Neighbor

gene id symbol gene type direction distance location
LOC110502371 LOC106561599 coding upstream 20367 91937152 ~ 92008067 (+)
LOC110502363 LOC106561595 coding upstream 95080 91853852 ~ 91933354 (+)
LOC110499735 LOC106561597 coding upstream 176082 91836814 ~ 91852352 (+)
slc6a15 LOC106561596 coding upstream 248453 91754959 ~ 91779981 (+)
rassf9 rassf9 coding upstream 437304 91582584 ~ 91591130 (+)
LOC110502379 NA coding downstream 8332 92057562 ~ 92063708 (+)
borcs5 LOC106561602 coding downstream 16368 92065598 ~ 92072317 (+)
LOC110499798 LOC106561603 coding downstream 37084 92086314 ~ 92116411 (+)
LOC110499816 LOC106561604 coding downstream 73830 92123060 ~ 92129748 (+)
LOC110499833 LOC106561605 coding downstream 89850 92139080 ~ 92151823 (+)
G203629 NA non-coding upstream 34730 91990872 ~ 91993704 (+)
G203561 NA non-coding upstream 108615 91918870 ~ 91919819 (+)
G203579 NA non-coding upstream 166471 91861393 ~ 91861963 (+)
G203559 NA non-coding upstream 174857 91853213 ~ 91853577 (+)
G203547 NA non-coding upstream 204638 91822319 ~ 91823796 (+)
G203671 NA non-coding downstream 16030 92065260 ~ 92065481 (+)
G203674 NA non-coding downstream 25398 92074628 ~ 92074860 (+)
G203679 NA non-coding downstream 29492 92078722 ~ 92078933 (+)
G203697 NA non-coding downstream 50127 92099357 ~ 92099781 (+)
G204211 NA non-coding downstream 68992 92118222 ~ 92118699 (+)
G203646 cpa2 other upstream 3692 92021755 ~ 92024742 (+)
G203551 NA other upstream 181034 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 356535 91668836 ~ 91671899 (+)
G203414 NA other upstream 404141 91622001 ~ 91624293 (+)
mgat4c LOC106561589 other upstream 489061 91366282 ~ 91543765 (+)
G204240 ckap5 other downstream 108045 92157275 ~ 92159903 (+)
G204593 NA other downstream 632116 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 788194 92837196 ~ 92839440 (+)
G205404 NA other downstream 1322163 93371393 ~ 93388550 (+)
G205482 NA other downstream 1352387 93401617 ~ 93402234 (+)

Expression


Co-expression Network