borcs5 (LOC106561602)


Basic Information

Item Value
gene id borcs5
gene name LOC106561602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92065598 ~ 92072317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576854.2
TCAGAATACACTATATTatgcccagcctttggaactttggttttcctagatatggctactatattgtgatcactacattaGTAGTAGTGGGGATTTATATTAATTTTATTGTCATGGTAGTACAAAATTGATCATGATTGATCGTACATTCCAGCACAGTAGATGGCAGCATGCACTTAAACGATTGTTTGCTGACCGCAATGATAgcatagaagaagaagaggggtggttgtgtgtttacggaagtagctagctagtttgttatCTTTCAGCTTGTTAACATATTTACTTAAATTAATTCTAGTTTGCTACATCATGAAACTATCATGATggtaaaaatataataaaaatcAAAACAGGCGTGGTCTAACAGAACAAGATAAACACAACGAAGGTCTCCTGAGGTGGTGAATTGAAGCCATAACATAACTGACACCATGGGGGCCGAGCAGAGCGGTGATTCTGAGCACAAACACACCGACTACAGTTCCTCGGTGGTGCCCTCTCCAGCGAAGCAGAAGGCTAAAATGGATGACATTGTGGTGGTGGCTCAGGGGACACAGTCATTGCGCAACATCCAAAATGACCCTGATGTCATCAAGCTTCAGGAAATCCCCACTTTTCAGCCCTTGTTGAAAGGTGTGCTGAGCGGACAGATGTCCCCCAGCAGTTTGTGTCTAGAGAGGCTGGACTCTGCCCAGGTGCTGCAGCTCTGCATCCGCTACCAGGACCACCTGCACCAGTGTGCCGAGGCCGTGGCCTTCGACCAGAACGCCCTGGTCAAGAGGATCAAAGAGatgGACCTGTCTGTGGAGACGTTGTTCAGCATCATGCAGCAGCGTCAGAAGCGCTATGCTAAGTACGCTGAGCAGATCCAGAAGGTGAACGAGATGTCCATGATCCTGAGACGTATCCAGATGGGCATTGACCAGACCGTCCCCCTGATGGAGAGGCTCAACAACCTGCTGCCGGAGTGCGAACGCCTGGAGCCCTTCAGCATGAGGCCGGACGGGGACGTTGCAGCCAAGTAGAAATATCTCTGCCTGGGTATGCTGCTTCACTCACTGTCATGGCCCTCTAGTTTAGCCTTCACTGCCTCCGCCATTTTAAAAGCTCTTTATTGAACCATTCATGTTGaacagaagagggggggggggggaagactcTGCCCAGCTTGCTCCCCAATCCATCCTAAACCCACATCCACAACTTACCGGCCCTGGACATTTAGCTCAGCCACATAAGTAGTCCCGTCCCCATGCACCAGATGTAGTGGGTTTCTGGGACAGCTACATCAGGGGTTTGCATGTCGCTGAGTGAATTGGAAGACTGTAAAACAGGAAGTTTACCTGATGAGTCACTGAAGGGAACCTGCTTGGATCTTTGATTACTGGTACTTTGTAGACACCACAAGGAGTGTGGTGACAAAATGACTGAATCTCCAGAAGTAATATTAGTCAAAGATGAGCTCTGAAGATAAACCCCTGGAGCTTCAACTGGCACTAtttttttgttttgggggggggggggggggggacgacattTTTATTACGCTAAATTATTTTGAGTGTTAAGTGACTGAATATGTTGGATTCTCTGAGTATTTTAAATGGCTTACATAACAACAAATGCAAATGTTTATTTGGGAAATAAATTAATACTTGA

Function

NR:

description
BLOC-1-related complex subunit 5

GO: NA

KEGG:

id description
K20819 BORCS5, LOH12CR1; BLOC-1 related complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576854.2 True 1665 mRNA 0.46 5 92065598 92072317

Neighbor

gene id symbol gene type direction distance location
LOC110502379 NA coding upstream 1890 92057562 ~ 92063708 (+)
smc1b LOC106561601 coding upstream 16368 92028434 ~ 92049230 (+)
LOC110502371 LOC106561599 coding upstream 57531 91937152 ~ 92008067 (+)
LOC110502363 LOC106561595 coding upstream 132244 91853852 ~ 91933354 (+)
LOC110499735 LOC106561597 coding upstream 213246 91836814 ~ 91852352 (+)
LOC110499798 LOC106561603 coding downstream 13997 92086314 ~ 92116411 (+)
LOC110499816 LOC106561604 coding downstream 50743 92123060 ~ 92129748 (+)
LOC110499833 LOC106561605 coding downstream 66763 92139080 ~ 92151823 (+)
LOC110499877 LOC106561610 coding downstream 315792 92388109 ~ 92392385 (+)
LOC110499906 LOC106561611 coding downstream 382008 92454325 ~ 92460616 (+)
G203671 NA non-coding upstream 117 92065260 ~ 92065481 (+)
G203629 NA non-coding upstream 71894 91990872 ~ 91993704 (+)
G203561 NA non-coding upstream 145779 91918870 ~ 91919819 (+)
G203579 NA non-coding upstream 203635 91861393 ~ 91861963 (+)
G203559 NA non-coding upstream 212021 91853213 ~ 91853577 (+)
G203674 NA non-coding downstream 2311 92074628 ~ 92074860 (+)
G203679 NA non-coding downstream 6405 92078722 ~ 92078933 (+)
G203697 NA non-coding downstream 27040 92099357 ~ 92099781 (+)
G204211 NA non-coding downstream 45905 92118222 ~ 92118699 (+)
G204214 NA non-coding downstream 49538 92121855 ~ 92122169 (+)
G203646 cpa2 other upstream 40856 92021755 ~ 92024742 (+)
G203551 NA other upstream 218198 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 393699 91668836 ~ 91671899 (+)
G203414 NA other upstream 441305 91622001 ~ 91624293 (+)
mgat4c LOC106561589 other upstream 526225 91366282 ~ 91543765 (+)
G204240 ckap5 other downstream 84958 92157275 ~ 92159903 (+)
G204593 NA other downstream 609029 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 765107 92837196 ~ 92839440 (+)
G205404 NA other downstream 1299076 93371393 ~ 93388550 (+)
G205482 NA other downstream 1329300 93401617 ~ 93402234 (+)

Expression


Co-expression Network