LOC110499816 (LOC106561604)


Basic Information

Item Value
gene id LOC110499816
gene name LOC106561604
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92123060 ~ 92129748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576886.2
CAGTTTCAGCATTATCTGTGGTCCATTTGGCCGGTCATCATACTCGCCTTTTTTTGTGTGGAACTCACCacaactagctagctaccacGACACCACAAACATCAACAACAGAAAAACACAGGAAGTAAAACGGAAGCGCGTCACTGCTGGGCTGACCAATCGACGAGGAGTTGTACATTTGATCTAACCAATCACACACAACGGCAGTGGCTTTGAAAGATTGGCGGTCGAAGCGCaaagaatagggtgccgtttggttTTAAAGTTATTGTACTTCACATATAGCTAAATGCGTCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGCCTACAAAGACCGAGAGTTCAAATACCCTCTGCCCCAGAGACTACAGACAAAAACGCAATTACAGGTCCTAGGAGAGAACCTGTCACCTCTTCCTCCGGTGCCGCTCCGGCAAAGAAATTCACCATCCATGACTTTGACATCGGGCGGCCCCTGGGCAAGGGCAAGTTTGGGAACGTGTACGTTGCGCGGGATAAGAAGCTGAATTTCATTGTGGCACTGAAAGTGCTCTTCAAGTCTCAGATGGAGAAGGAAGGCGTGGAGCACCAGCTCCGAAGAGAGATTGAGATTCAGTCCCATCTTAGACACCCCAACATCCTGCGCTTCTACAACTACTTCCATGACCACTCAAGGGTCTTTCTGATCCTGGAATACGCCCCACGGGGTGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTCGATGACCAGCGCACTGCTACGTACATGGAGGAGTTGGCTGATGCGCTGCAGTACTGCCATGAGAGGAAGGTGATACACCGTGACATCAAGCCTGAGAACCTGTTACTGGGTCTCCGTGGGGAGCTGAAGATAGCAGACTTCGGCTGGTCTGTCCATGCCCCATCCTTAAGGCGCCGCACAATGTGTGGAACGCTGGACTACCTGCCCCCAGAGATGATTGAGGGGAAGATCCACGATGAGAAGGTGGACCTCTGGTCCATCGGGGTGCTCTGCTACGAGTGCCTTGTTGGAAACCCCCCATTTGAAACTGCCAGCCACTCCGACACGTACAAACGCATCACAAagGTTGACCTGCAGTTCCCCAAggtggtgtctgatggtgctCGGGACCTGGTCTCTAAGCTGCTCCGCCACAGTCCCTCTATGCGGCTCCCCCTGCAGAGCGTCATCAACCACCCCTGGGTGAAAAGCAACTCCCGACGGGTCCTACCTGTCGTCTTTGCTCCCAAGAAACCCTAACTGTCCAATGTTCCAGCCTGTCTACACTGACACGAAACCCCTAaaccaccatagacctacatattcATATGTTTATAGGTAATTGAATATTCATGTCTATAAATAATTGAACACCACCCAGTACGTTCCAGCCTGCCTTCTACCTGGGTGGAGGACTGACTCTTACCCTGCTGATTGGGAGTTTCCAACTTTCAGGGGTttcactttctttcttttttacttaCCCGGACAACCTTCATCCACAATTTTAGTTTCACTCGCAGATATAGATGGATCTGTTAAGCTGGGACAACCAAAGGACAATAGACTACTCTCATTTTAATTTACATTCAGCCCCAGAACAATTCAAGGGCGCCCTCTACTGTGTGAGATTATTTCTTGCGTTTCTTTAAATAGATTTTATAAATGTACTTTGTCTTTGGTTTCCTTtctccttttttttctcttttcaaCATACCTTTTTATACAGCCTGCATGAAACATCCTCTACAACGCTTATTCTTTGTGTTCCTTTTGCAACTGTTTTGAAATAAATATGGCATTGGGTGCTTCACAGGATGATGCCAAATTGATTTATGGAAAAGAGTGGCAAGTATCAATTAAGGTTATGAATGAAGTAGTGGGTGAAATTCCATGTCTTACCACCCTTGTTCCAGCTGATGTCAGTGTTGTTCTGTGGTCCACTGGGACTATCATTATCCTCAGTCCTGCAAATGATTCCTGTCATGGGGTGACTGTTTTTGTCTGGGAACTGCATGACTGCCGGGGGTGTATCTGAGATGGCcatagccctggtcaaaaggagtgctgTCTATAGTGAATGGATTTGTTACACAGACCGGGACACCGACAGGAAGATAAGGATAACTCTTAATACAT
>XM_021576880.2
TCCATTTGGCCGGTCATCATACTCGCCTTTTTTTGTGTGGAACTCACCacaactagctagctaccacGACACCACAAACATCAACAACAGAAAAACACAGGAAGTAAAACGGAAGCGCGTCACTGCTGGGCTGACCAATCGACGAGGAGTTGTACATTTGATCTAACCAATCACACACAACGGCAGTGGCTTTGAAAGATTGGCGGTCGAAGCGCaaagaatagggtgccgtttggttTTAAAGTTATTGTACTTCACATATAGCTAAATGCGTCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGCCTACAAAGACCGATGGCAACTTCAATGGTTTCTGTGGGTCCACAGAGAGTTCAAATACCCTCTGCCCCAGAGACTACAGACAAAAACGCAATTACAGGTCCTAGGAGAGAACCTGTCACCTCTTCCTCCGGTGCCGCTCCGGCAAAGAAATTCACCATCCATGACTTTGACATCGGGCGGCCCCTGGGCAAGGGCAAGTTTGGGAACGTGTACGTTGCGCGGGATAAGAAGCTGAATTTCATTGTGGCACTGAAAGTGCTCTTCAAGTCTCAGATGGAGAAGGAAGGCGTGGAGCACCAGCTCCGAAGAGAGATTGAGATTCAGTCCCATCTTAGACACCCCAACATCCTGCGCTTCTACAACTACTTCCATGACCACTCAAGGGTCTTTCTGATCCTGGAATACGCCCCACGGGGTGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTCGATGACCAGCGCACTGCTACGTACATGGAGGAGTTGGCTGATGCGCTGCAGTACTGCCATGAGAGGAAGGTGATACACCGTGACATCAAGCCTGAGAACCTGTTACTGGGTCTCCGTGGGGAGCTGAAGATAGCAGACTTCGGCTGGTCTGTCCATGCCCCATCCTTAAGGCGCCGCACAATGTGTGGAACGCTGGACTACCTGCCCCCAGAGATGATTGAGGGGAAGATCCACGATGAGAAGGTGGACCTCTGGTCCATCGGGGTGCTCTGCTACGAGTGCCTTGTTGGAAACCCCCCATTTGAAACTGCCAGCCACTCCGACACGTACAAACGCATCACAAagGTTGACCTGCAGTTCCCCAAggtggtgtctgatggtgctCGGGACCTGGTCTCTAAGCTGCTCCGCCACAGTCCCTCTATGCGGCTCCCCCTGCAGAGCGTCATCAACCACCCCTGGGTGAAAAGCAACTCCCGACGGGTCCTACCTGTCGTCTTTGCTCCCAAGAAACCCTAACTGTCCAATGTTCCAGCCTGTCTACACTGACACGAAACCCCTAaaccaccatagacctacatattcATATGTTTATAGGTAATTGAATATTCATGTCTATAAATAATTGAACACCACCCAGTACGTTCCAGCCTGCCTTCTACCTGGGTGGAGGACTGACTCTTACCCTGCTGATTGGGAGTTTCCAACTTTCAGGGGTttcactttctttcttttttacttaCCCGGACAACCTTCATCCACAATTTTAGTTTCACTCGCAGATATAGATGGATCTGTTAAGCTGGGACAACCAAAGGACAATAGACTACTCTCATTTTAATTTACATTCAGCCCCAGAACAATTCAAGGGCGCCCTCTACTGTGTGAGATTATTTCTTGCGTTTCTTTAAATAGATTTTATAAATGTACTTTGTCTTTGGTTTCCTTtctccttttttttctcttttcaaCATACCTTTTTATACAGCCTGCATGAAACATCCTCTACAACGCTTATTCTTTGTGTTCCTTTTGCAACTGTTTTGAAATAAATATGGCATTGGGTGCTTCACAGGATGATGCCAAATTGATTTATGGAAAAGAGTGGCAAGTATCAATTAAGGTTATGAATGAAGTAGTGGGTGAAATTCCATGTCTTACCACCCTTGTTCCAGCTGATGTCAGTGTTGTTCTGTGGTCCACTGGGACTATCATTATCCTCAGTCCTGCAAATGATTCCTGTCATGGGGTGACTGTTTTTGTCTGGGAACTGCATGACTGCCGGGGGTGTATCTGAGATGGCcatagccctggtcaaaaggagtgctgTCTATAGTGAATGGATTTGTTACACAGACCGGGACACCGACAGGAAGATAAGGATAACTCTTAATACAT

Function

NR:

description
aurora kinase B-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K11479 AURKB; aurora kinase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576886.2 False 2153 mRNA 0.47 9 92123060 92129748
XM_021576880.2 True 2165 mRNA 0.47 9 92123081 92129748

Neighbor

gene id symbol gene type direction distance location
LOC110499798 LOC106561603 coding upstream 6649 92086314 ~ 92116411 (+)
borcs5 LOC106561602 coding upstream 50743 92065598 ~ 92072317 (+)
LOC110502379 NA coding upstream 59352 92057562 ~ 92063708 (+)
smc1b LOC106561601 coding upstream 73830 92028434 ~ 92049230 (+)
LOC110502371 LOC106561599 coding upstream 114993 91937152 ~ 92008067 (+)
LOC110499833 LOC106561605 coding downstream 9332 92139080 ~ 92151823 (+)
LOC110499877 LOC106561610 coding downstream 258361 92388109 ~ 92392385 (+)
LOC110499906 LOC106561611 coding downstream 324577 92454325 ~ 92460616 (+)
LOC110502389 LOC106561615 coding downstream 386076 92515824 ~ 92680198 (+)
LOC118943603 NA coding downstream 512282 92642030 ~ 92643329 (+)
G204214 NA non-coding upstream 891 92121855 ~ 92122169 (+)
G204211 NA non-coding upstream 4361 92118222 ~ 92118699 (+)
G203697 NA non-coding upstream 23279 92099357 ~ 92099781 (+)
G203679 NA non-coding upstream 44127 92078722 ~ 92078933 (+)
G203674 NA non-coding upstream 48200 92074628 ~ 92074860 (+)
G204226 NA non-coding downstream 3269 92133017 ~ 92133229 (+)
G204239 ckap5 non-coding downstream 23652 92153400 ~ 92154538 (+)
G204277 NA non-coding downstream 71676 92201424 ~ 92202395 (+)
G204287 NA non-coding downstream 79551 92209299 ~ 92209553 (+)
G204309 NA non-coding downstream 98329 92228077 ~ 92228341 (+)
G203646 cpa2 other upstream 98318 92021755 ~ 92024742 (+)
G203551 NA other upstream 275660 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 451161 91668836 ~ 91671899 (+)
G203414 NA other upstream 498767 91622001 ~ 91624293 (+)
mgat4c LOC106561589 other upstream 583687 91366282 ~ 91543765 (+)
G204240 ckap5 other downstream 27527 92157275 ~ 92159903 (+)
G204593 NA other downstream 551598 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 707676 92837196 ~ 92839440 (+)
G205404 NA other downstream 1241645 93371393 ~ 93388550 (+)
G205482 NA other downstream 1271869 93401617 ~ 93402234 (+)

Expression


Co-expression Network