LOC110499833 (LOC106561605)


Basic Information

Item Value
gene id LOC110499833
gene name LOC106561605
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92139080 ~ 92151823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576894.2
ACATTGCCCTGAAACGAACCTGTGAAGTCCATAGTTAAGTCGCATTTCTCTTTATGTGACGAGATTCATGTCGGTTTTTATTGTTTTGTGTATTCCCTCGTGTATACTTTGTCCATTAATTTGTCCAGCCAAACACCAGAGCTGGCAGCGAACGACGAGTGACAAAGCGTGCACACTGCATTAGGCATGAATAGTTGTTCCTGTAAGAATTGTGAATCTCCAACTGAAGACGCATTGAATATATATTAGCAGTAAAACGTTCCTCGAATGGCACCTTGCAATACTCTGACGTAGGCTAAATAAACTCCCACCGACAGAGCTTTCCATTTGCAGTTTCATTCAATCTCGCTGCAGTCCTGACTTCTCTTCTCAGCTTCCGGCTGTCCTGGAATTTACTACGAACATGGATTGTTCTGAAGAGATGAACAACCGGCAGGTATCTGATCCTTCCACTCAGGAGTCGTTACCACAATCAGATAATGGAGCGGTAGGAGTAGCAATAAACAAACAAGATAATGTCCCAGATCTACCCTCTTCAAACTGGCAGAATCCCTCAAAAACCGAGGAACAAACTTTTTCTCAACCGGTGGATAGGCCTAACACAAGAAATGGAACGTTTAAAACCGACGCACCTGCAATGCATAATACCGACGTTGATGGAGCCGAATGTGCCACTGTGGATCATTTTACGATACACAGTCATGGCACAGATTCCTGTCCCAATGAAAGTGTTACAACGAGCCCAGTAGAGCAAAATGGCACGGGGACGGAGATTAGTCCCACCACTGTGATATTGGAGACAGATGGAAACATTTCGGTTCTACCTGGCACAGTGACCGGGGACGGGGATGATGATGACGAAGGAGGAGATGAGAATAAAGCGAGGGGAAACTGGTCCAATAAAATGGACTTCATTCTCTCAATGGTTGGATATGCTGTTGGTTTGGGAAACGTCTGGAGATTCCCATACCTAGCCTTCCAAAATGGAGGAGGTGCTTTCTTGATTCCTTATCTAATCATGTTGGGTCTTGCTGGAATCCCCATATTCTTATTGGAGGTGTCCTTGGGGCAGTTTGCAAGCCAAGGACCCGTGTCCGTATGGAAAGCAATCCCTGCTCTTCAAGGTTGCGGGATTGCCATGTTGATAATATCAGTCTTGATAGCCATATACTATAACATAATAATGTGCTGGACATTGTACTACCTGTTCGCTTCGTTGAAGGGCTCACTCCCCTGGGCGAACTGCAAGAACAAATGGAACACTCAACACTGCATGGACAAAGACATGCTTCTTCTTGATTCATGCATTCTGCGGGATGGGAACGCCACCTCTATAAGGAATACTACACTATGTTTGTCTGCTGATGTCATTGGGAATCTGAGCAAACTCACTAACATCACATCTGAGATCAACAAAACCTATGTCAGCCCAAGTGAAGAGTATTTTAAaTATAATGTACTGAACATCTCCAGAGGAATAGAATACCCAGGGGAAATCCGCTGGCCTCTGGCCCTCTGTCTTCTCTTGGCATGGGTTATTGTCTACGCCTCACTGGCTAAAGGAATCAAATCATCTGGGAAGgTGGTGTATTTCACGGCTACGTTCCCCTACGTGGTGCTGGTGATTCTGCTGGTCAGAGGAGTTACTCTGCCTGGAGCTGGGGATGGCATCCTCTACTTCATCACTCCCAAGTGGGAGAAACTCTACAATGCCAAGGTGTGGAAGGATGCTGCAACCCAGATCTTCTTCTCCTTGTCAGCAGCCTGGGGTGGACTCATCACGCTGTCCTCCTACAACAAGTTCCATAACAACTGCTACAGGGACACCATCATTGTGGCCTGCACCAACAGTGCCACCAGCATCTTTGCAGGGTTTGTCATCTTCTCTGTCATCGGGTTTATGGCTCATGAGCTGAAAGTGCCCATCGAACAGGTGGCTGATGGGGGTCCAGGCATAGCCTTCGTAGTGTATCCAGAGGCCCTCACcagacttcctctctctcctttctgggcCATCATCTTCTTCCTCATGCTACTCACCCTGGGACTGGATACCATGTTTGCCACCGTTGAGACCATAGTGACGTCTGTGTCAGATGAGTTCCCCAGATATCTGAGGAAGTACAAGGCCCTCTTCACCCTGGGGTGCTGCACCTCTTTCTACATCCTGGGGTACCCCTTGATCACAGAGAATGGAATGTATATGCTTCAGCTGCTGGACACATATGCAGGCTCATACTCTCTGATCATCATCGCCATCTTTGAACTTGTGGGAGTATCATACATTTATGGTCTGACGAGGTTCTGTGAAGACATTGAAATGATGATCGGGTTCCAGCCAAACATATTCTGGAGGGTCTGCTGGGCCTTTGTGACCCCCACCATTCTCACATTTATCCTGGGTCTGAGTCTGTACCACTGGAAGGTGATGACCTATGAGACCTACACCTACCCCACCTGGTCCATGGTGATGGGCTGGCTCATGGTGGTGTGTTCTGTTATCTGGATCCCCATCATGTTTGGCATCAAGATGCACCTGGCCCCCGGCACCTTCATCCAGCGTCTGAAGCTAGTGTGCTCCCCTCAGCCAGACTGGGGCCCCTTCCTGATGAAGCACAGAGGAGAACGCTACAAGAACATGATCGACCCGCTAGGAACCAACTCCCTGGGGCTCATACTCCCTCCTAAAGGCCTGGGCCAGACCCAGTGCTAATGTCTGTTCCTGGACAAGTGACAAAGTTCACCAACTCTGCAGTTGTCATCTGTTGTTCGCTCTATTCACCGTTTGCACACTTTTCTATAGATTACACAAAGGGAAATTGAAAGTCAAAGTCCAAGATTATGCATGTTGTCTTCTGACAAAGACCGTCCCATTAATACAGCAGTAGGCCTATGATCGATTTTACAGTGAACAGGGCTGATTTGGTGCCTACTGTGCTTAATCTCCAGTCTTCCACAAtgctgtttattttatttatatttaactATTCTGAGCCCACTGATTAGGAGAATGGTTATAGACATGTCCTCCCAGCACTCAACACTGTTACTAAATAGATTTGAAAAAATAATGAGGTTTGTTGTGATGCATGTCATTGTCAAGAAATCTGCAATAGGAAACATGTTGATGAAAGATATATTGCCACCCCTATCTGTTTGCGTGTACTATAGCATAGTTATAGGTAAACATGCCATGTCAGCTGCTCAATGAACTAATAAGCACATCCCAACAGAGAAAAACTGTGGCTACAATCAACCTCAAACTTCCCCTGTTCTAAAATGTCACTGCCTTTTGTATAAGCAACGTGTAACTTGTATGTCAAATCATTTGTGTTGCATGTGCCTACAACTGAATCAGAAAACATTGTAATTTGTCAAGAATTTGGCACGTTACACACAATGTTGATCATGCCGTTCTTGTACGTCATGCTTCTATTTGTCTTTGGCTGCTGAGAGTGTTtctaaatgtattgtatgcttGCACTTGTTTGAATACAGCTCTCCTCTTCCCTTGCATGTAGTCACAAAGCATGCTTGGAGGCTGTACTGTTGACTCTGTGTTTTCCATTCTTTTACATCAATTTAGGATATACAAAACCAAAGATGGAGTGCTTAGTGAAAGATTTGGAGACAGAAACATCTACGGGAAGTTGAATATACTGCCAGTCAATTTCAATTTGATCACAAATGTTTTCCAGCATGTTTATGCCACATCTTCAGGTAACCTTTGGCCTTTGAGATGTACTCGAATTTTAAAAGATTGTATGGATTGAAAAATAATAAAGTTATTAGATTGTTTTAAATAGTGTGCTTTTTCAGCACTTTATGGATATTTGAGGCAATACCCCAGATTTTGTATTTATCTACACAATTGCGATATTAGCCTTTATTGTAAATGTTGAAAATACAACTTTAGGACTTGGATTCAATCCGACGCATGCTATAGCGCAGCTGCCGTATTAGGGGACATTTTGCCTTTGAAAAGGTCATTTACACTTGAGCCGACATTCAAAGCGTTAACCATGAATGTGAACTCCGCAAACGGCTGGGAAGTAGCCTTTAACAGGCACATTGTCAGCTGTCTAGCGCAGTAGCATTATAAACCATGTTCGGATTAAATCTTGGCCTAAACCTGTTGAAATCCTGAAATACCTTTATTAATATACCTTttgtgtatactgaacaaaaatataaacgcaacatgcaacaatttcaatgattttactgagttacagttcatataaggaaattagtcagttgaaataaattcattagacct

Function

NR:

description
sodium- and chloride-dependent glycine transporter 2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05038 SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576894.2 True 4279 mRNA 0.44 15 92139080 92151823

Neighbor

gene id symbol gene type direction distance location
LOC110499816 LOC106561604 coding upstream 9332 92123060 ~ 92129748 (+)
LOC110499798 LOC106561603 coding upstream 22669 92086314 ~ 92116411 (+)
borcs5 LOC106561602 coding upstream 66763 92065598 ~ 92072317 (+)
LOC110502379 NA coding upstream 75372 92057562 ~ 92063708 (+)
smc1b LOC106561601 coding upstream 89850 92028434 ~ 92049230 (+)
LOC110499877 LOC106561610 coding downstream 236286 92388109 ~ 92392385 (+)
LOC110499906 LOC106561611 coding downstream 302502 92454325 ~ 92460616 (+)
LOC110502389 LOC106561615 coding downstream 364001 92515824 ~ 92680198 (+)
LOC118943603 NA coding downstream 490207 92642030 ~ 92643329 (+)
LOC118943605 NA coding downstream 513002 92664825 ~ 92669744 (+)
G204226 NA non-coding upstream 5851 92133017 ~ 92133229 (+)
G204214 NA non-coding upstream 16911 92121855 ~ 92122169 (+)
G204211 NA non-coding upstream 20381 92118222 ~ 92118699 (+)
G203697 NA non-coding upstream 39299 92099357 ~ 92099781 (+)
G203679 NA non-coding upstream 60147 92078722 ~ 92078933 (+)
G204239 ckap5 non-coding downstream 1577 92153400 ~ 92154538 (+)
G204277 NA non-coding downstream 49601 92201424 ~ 92202395 (+)
G204287 NA non-coding downstream 57476 92209299 ~ 92209553 (+)
G204309 NA non-coding downstream 76254 92228077 ~ 92228341 (+)
G204312 NA non-coding downstream 79887 92231710 ~ 92231909 (+)
G203646 cpa2 other upstream 114338 92021755 ~ 92024742 (+)
G203551 NA other upstream 291680 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 467181 91668836 ~ 91671899 (+)
G203414 NA other upstream 514787 91622001 ~ 91624293 (+)
mgat4c LOC106561589 other upstream 599707 91366282 ~ 91543765 (+)
G204240 ckap5 other downstream 5452 92157275 ~ 92159903 (+)
G204593 NA other downstream 529523 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 685601 92837196 ~ 92839440 (+)
G205404 NA other downstream 1219570 93371393 ~ 93388550 (+)
G205482 NA other downstream 1249794 93401617 ~ 93402234 (+)

Expression


Co-expression Network