LOC110502383 (LOC106561607)


Basic Information

Item Value
gene id LOC110502383
gene name LOC106561607
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92210330 ~ 92228748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580367.2
gtgtgtgtgtccaggctgACTCATGACATCAGCCTGGAGGAGTTTGAAGATGACGATCTCTCCCAGGCCACAGAGATCACTGACGAGGCTGGAGCAAGCCTCAACTATGACAACCTTGACTCACAAGACCATGTGACGTGGCCAGCCAGTAGCGAGGCGGGGAAGACAGACGGGCGGGGGTTTAGGGAATTGCAGGCGGAGATGATCCACTTGGAGCTGATCGATGCTGAGGAGGATATCCAAGAGGAACAGGATCACTGGGGCCTGATCCATGGTTTCCAAGACGACCACAGGCTCAACCAGGAAGAGAGAAGGGCCATTGTTTTAACGCCTGTCAGACAGAAACAGCCTAATGTCATAGAATCAGAATCTGCGGAACATCGGGTCACTATGGATACGTACAGGCCCAAGAGACCAACCACCCTAGCACTGTTTCCACAGCCTCAGCCTCCCAGGACTCAGGACAAGGACACTATTAACAACAATTCGTTTGGAAAGAAGGACACGTGGAAGGAGAATGTATCAAACTCaaactcctcctccccccacaTAACAGGGGATCCCACTAATGAGCAGGTGAATGACGAGGCTGTCCAGCAGCACAACGGTGACGGCTCTGTGGCCAAACCACCACCAAACAGAGGGAAAGAGCAGGCAGTCAAGGCACACAGCAAGGACTACTCCACGTTCATCTCACACGGAGTTACAGAAACACGAGGCCGACAGCGAGACGCCAAACAGCGGAATAAGAAGCCCTCTGCTGCTCCACACAACCAGGTTACAGCAGCAAAACCCAAAGCAGGCAGCATGAGAGACATGGCTGTGGAGGGGGATAAGAATAGGGATGGTAGCAGGGGGCGAGGAGGAGGACCGGGGCGAGGTCAGGTTCGGGGGTGCTGCCAGGAGGAGGAGCGCCAGCCAGAGGCCACCGAGGAGATCTACCTAACCCCGGTACACCAGAAGAACCCTGACACTGACTGTGACACTGACCGTGACCGTCCCTTCCTGTCTCAGAGCAGCGAGGGCAATCGCATGTCTATCAGCTCCGATGCAGAGGGACCCCCAGCATACACAAACACCACCCTCCCTGACCGAACAAACCCCTCCATCAGCGAGGAGGACGAGGTCTACCTGCACCCCTCTGCACCTCCTCCACGCTCCTCCTCCTCGTGCCTTAGGCCATCCGTCAGTGAGGGAGGGGACCGGGACAGGGGGATGTGGGACAGGGGCTCTAAGTCTAGATCTAAGGGGGGGTCGGGGGCTCTGCGAACTGCACACACTCAGAGCTCCGAGGCTGATGGTCTGTCTTATGACTCTGTCAAGTACACCCTAGTGGTGGACGAGCACGCCCAGCTAGAACTGGTGAGCTTGAAGCAGTGCTACCATAGCTACAGTGAGGACAGCGACACAGAGACGGTATATGAGTCAGCCAACGAGGAGGACTATGAGGTGGATCACAGCGAGCTgaaaagagaaaggagaaagtCATCACGCCTGTCCAGAGCTTCTTCATCCTCTGAGGCAGGTGTTGGCGGGGGACCTCGAACACGCAAGTTCCTCAATGTGTTTGTGAACGGACGTTTACACTCCTCCGGTGCAGAGTCCTTTGGCCTGTTCTCCTGTGTGTTAGACGGGGTGGAGCAAGAGCAGAGCCACAGAGCTGTGTTCAGGTTTGTCCCTCGCCATGACGATGAGCTGGAGCTAGAGGTGGATGACCCCCTACTGATGGAGGCTCAGGCTGATGACCTGTGGTGTAAGGCCTACAACATGAGGACTGGGGCCAGTGGCATCTTCCCTGCCTACTACGCTGCCAAGGTCACACAGGAACAAAGCAAAGATGACAAAGATGACTGGGTTGACAGATTCCGTGTGAAGTTCCTAGGCTCTGTTAACGTACCGTACCACAAAGGCAACGATGTGCTTTGTGCTGCTATGCAAAAGATTGCTACCAACCGGCGGATGACCATGCAGCCTCCCTCTACATGTGTTCTGGAGATCAACATGAAGGGGGTGAAGATCATAGTGCAAGATGAATGCAGGACCTCGGAAAGAGGGGATAAGTGCTTTCACTTTTTTCAGCTTAAGAACATCTCCTTTTGCGGCTGTCACCCAAAACATAACAAGTATTTTGGATTCATCACTAAACATCCTGATCATCAGCGGTTTGCTTGTCATGTATTCATGTCAGACGACTCCATGATGCCCCTAGCTGAGTCTGTTGGGAAAGCCTTCCAACTGTACTACAAGGAAACTGTGGGCTACTCCTGCCCAACAGAGGACATCTTCATTGAATAGCGTTCTCTCAATAGTATATTTCTCCAATATTGTGTTGTGATGAAACAACTTGCATGGTGGATTTTAAACTGCATTGAATGGTAACGCTTTGGCCGACTCCTAAAATAAATCTTTACAATGTGCCAGTAAATAACCATTTAGTAATACTGATCTGCAACACAATCTACTTGGTGCAGCTTTCTACTCACTGCCATGTTTCTACAGAACAAACATGTCTACAGAAATACCCAGGCTAAAGCATTACCGGTCCCATCCAAAAGAGCCTACATGTATCTTCCTCACAAAGGTTATTGGCCAAAAGTACAGTACTGTTAACTGTAAAGTGTGCAGCCAAATGTGAGAACAGGTACTACAGTGCAGAGAAACCAACAAGTAGTTACAGATCACACTCAATATCAAGATAGAATATGTTTATGTGGCTTTATGAGCTATTCCAAATGATATGAGATCACTATCAAGTCACCTGGAAACCTCGTCTCTGTACGGAGGAAGACGGGGACAGTGATTTCAATCTGTCTACGTGTCCCTGGACTGTTTTTAGTGTCACACTGTTTGATTTCAGATTCAGTTAGTATATATGTTGGAAAGTTTATTTATGGACTAATAGTCCATCACATCATAACAGGCTTTAAATTAAATGCAGTCCGTCAGTGCATTCTCACCAATTAACTATGTGAAAATGAACTCTGACTAGGGCTTGTCATCTATCTGCCAATACCAAAAAGGTGAATTAactcttatttttttattgtattgaAAGGAATGTAATTTCAATtaagaaataaaaaaatagtaGTCTGTTATTGAAGAATCAATGTATATCGGTGGGTAAGCAGGTGTAAGTTAAGGATGGTATCCTAATAACATTGTTTCCTACCTAATTCAATCACGCTCTATCACATTCTATGTGTGGAATTCTATCCGGGTGACCCTTGAAAATGACAATCTACAGACAAAAAAGCCCTATGTATTAACACTTACTCCTACTGTAACTTGGAAACAATGTTTGGCCAAAATTGTATGGTGGAATTACTGTATAAGGAAAATATTTCAACAAGTATGATCTTGGCATCACTGTGGTCTTACCACTTTAAAAGTCATCCAGAAGGCACTTTTTCTAAAAATCAAAACCACAAGTAGTGCCTATTTTCTAATTATTGTGATGACTGTTTACAGTATGTAGTTCCTTTTTATTTGAGATGGTTCTGGCACTGTGGGACAGATGTATTACCTGTACAATAGAAATATGCTGTTTGTAATTGAAATGTCCTACAGTAGGTTTGATCAAACCCCGTGTGTATTGCATGATATCAATGTCAAACAAAACAATGTAGAGAAAGACTCAGGAGGTCAATTCTTGTCATTAAATCTGAAGGTGTTTACATCTTCTCTgaaactca

Function

NR:

description
C-Jun-amino-terminal kinase-interacting protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580367.2 True 3695 mRNA 0.47 11 92210330 92228748
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533906 NA coding downstream 8299 92197336 ~ 92202031 (-)
LOC110499841 LOC106561606 coding downstream 19958 92153384 ~ 92190372 (-)
LOC110499762 cbpa2 coding downstream 182557 92021755 ~ 92027773 (-)
lrrk2 lrrk2 coding downstream 373150 91780201 ~ 91837180 (-)
lrriq1 lrriq1 coding downstream 469501 91691853 ~ 91740829 (-)
cry2 LOC106561609 coding upstream 4683 92233431 ~ 92265019 (-)
LOC110499897 LOC106573100 coding upstream 169306 92398054 ~ 92443838 (-)
LOC110499887 NA coding upstream 198895 92427643 ~ 92428734 (-)
LOC110499952 LOC106561617 coding upstream 641098 92869846 ~ 92881298 (-)
LOC110499968 NA coding upstream 858513 93087261 ~ 93090465 (-)
G204290 NA non-coding downstream 764 92209305 ~ 92209566 (-)
G204288 NA non-coding downstream 2990 92207090 ~ 92207340 (-)
G204279 NA non-coding downstream 10445 92197951 ~ 92199885 (-)
G204264 NA non-coding downstream 43140 92166948 ~ 92167190 (-)
G204225 NA non-coding downstream 77416 92132618 ~ 92132914 (-)
G204379 NA non-coding upstream 26996 92255744 ~ 92307743 (-)
G204421 NA non-coding upstream 97849 92326597 ~ 92326823 (-)
G204547 NA non-coding upstream 167322 92396070 ~ 92397541 (-)
G204728 NA non-coding upstream 235353 92464101 ~ 92464313 (-)
G204024 NA other downstream 422227 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 619281 91589212 ~ 91591049 (-)
G202279 NA other downstream 1768905 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 2600440 89606837 ~ 89609890 (-)
G198912 NA other downstream 4883861 87322139 ~ 87326469 (-)
G205192 NA other upstream 733296 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 2083676 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 2084642 94313390 ~ 94313918 (-)
G206750 NA other upstream 2099162 94327910 ~ 94328183 (-)

Expression

LOC110502383(LOC106561607) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110502383(LOC106561607) Expression in each Bioproject

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LOC110502383(LOC106561607) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network