LOC110499906 (LOC106561611)


Basic Information

Item Value
gene id LOC110499906
gene name LOC106561611
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92454325 ~ 92460616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576970.2
CTCCTAAAAAGGCCTGAGGTTTTGAAGGTATGTGATGGCATGGGTCCTGCGTATTCCTATTTAAATTCAGAGAGCAGGTGAGCCAGGCGcactctcctctcgtctctctctctttcaagggACTGTAACACATCGCCTCCTGTCCAGCTCTCCAGGgcctacagtaaccgGACTCAACCATGTGTGACGAGGAAGAGACAACAGCCTTGGTGTGCGACAACGGCTCAGGACTGGTGAAGGCTGGCTTTGCCGGTGACGATGCCCCCAGGGCAGTATTCCCCTCTATTGTGGGGCGCCCCCGTCATCAGGGTGTGATGGTGGGTATGGGTCAGAAGGACTCCTATGTAGGAGACGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAGTACCCCATTGAGCATGGCATCATCACTAACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAAGAGCACCCTGTCCTGCTCACTGAGGCCCCCCTCAACCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATGTGCCAGCTATGTATGTGGCCATCCAGGCTGTGCTGTCTCTGTATGCCTCTGGTCGTACAACAGGTATTGTGCTGGACGCTGGTGATGGTGTGACCCACAACGTGCCCGTGTATGAGGGTTACGCCTTGCCCCACGCCATCATGAGACTGGACTTGGCTGGCAGAGACCTGACTGATTATCTGATGAAGATCCTCACTGAGAGAGGATACTCTTTCGTTACCACCGctgagagagagattgTGCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGAATGAGATGGCCaccgctgcctcctcctcctctctggagAAATCCTACGAGTTGCCCGACGGACAGGTCATCACCATCGGTAACGAGAGGTTCCGTTGCCCAGAGACCCTCTTCCAGCCCTCCTTCATCGGTATGGAGTCTGCTGGTATCCATGAGACCACATACAACGGCATCATGAAGTGCGACATTGACATCCGTAAGGACCTGTACGCCAACAACGTCTTGTCCGGCGGTACCACCATGTACCCTGGTATCGGTGACCGCATGCAGAAGGAAATCACAGCCCTGGCCCCCAGCACTATGAAAATCAAGATGATTGCCCCCCCTGAGCGTAAATACTCTGTCTGGATCGGCGGCTCCATCCTGGCCTCCTTGTCTACCTTCCAGGCCATGTGGATCAGCAAAGACGAGTATGAGGAGGCCGGGCCCTCAATCGTCCACAGGAAGTGCTTCTAAATTACCCTCTCCTCTTATCTCGACTCTCTTCCTGCCCTAAAATCATTGCTCTCTGTTTTTCTCATGTGTCTCTAATACCCACAAACGACCCATTGTATGTGTTTACTATTTGTGCAATCTGTATTACGGGTCATCGGACTATCAGCATatttacaagcatttcacaacacccgcaataacatctgctaaacacagtgtatgtgaccaataacatctgctaaacacagtgtatgtgaccaataacatctgctaaacacagtgtatgtgaccaataacatctgctaaacacgtgtatgtgaccaataacatctgatttgaTATTGCTAAATAAATGAATTCTGCCTTTTGA

Function

NR:

description
PREDICTED: actin, alpha cardiac muscle 1-like

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576970.2 True 1662 mRNA 0.51 8 92454325 92460616

Neighbor

gene id symbol gene type direction distance location
LOC110499877 LOC106561610 coding upstream 61940 92388109 ~ 92392385 (+)
LOC110499833 LOC106561605 coding upstream 302502 92139080 ~ 92151823 (+)
LOC110499816 LOC106561604 coding upstream 324577 92123060 ~ 92129748 (+)
LOC110499798 LOC106561603 coding upstream 337914 92086314 ~ 92116411 (+)
borcs5 LOC106561602 coding upstream 382008 92065598 ~ 92072317 (+)
LOC110502389 LOC106561615 coding downstream 55208 92515824 ~ 92680198 (+)
LOC118943603 NA coding downstream 181414 92642030 ~ 92643329 (+)
LOC118943605 NA coding downstream 204209 92664825 ~ 92669744 (+)
LOC110499936 LOC106561616 coding downstream 235566 92696182 ~ 92799984 (+)
LOC110499942 LOC106561637 coding downstream 376580 92837196 ~ 92839440 (+)
G204578 NA non-coding upstream 9891 92444157 ~ 92444434 (+)
G204427 NA non-coding upstream 10492 92330141 ~ 92443833 (+)
G204313 NA non-coding upstream 153878 92233292 ~ 92300447 (+)
G204312 NA non-coding upstream 222416 92231710 ~ 92231909 (+)
G204309 NA non-coding upstream 225984 92228077 ~ 92228341 (+)
G204598 NA non-coding downstream 10690 92471306 ~ 92471516 (+)
G204601 NA non-coding downstream 16386 92477002 ~ 92495492 (+)
G204674 NA non-coding downstream 153483 92614099 ~ 92614399 (+)
G204675 NA non-coding downstream 154737 92615353 ~ 92615552 (+)
G204683 NA non-coding downstream 163365 92623981 ~ 92624242 (+)
G204240 ckap5 other upstream 294422 92157275 ~ 92159903 (+)
G203646 cpa2 other upstream 429583 92021755 ~ 92024742 (+)
G203551 NA other upstream 606925 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 782426 91668836 ~ 91671899 (+)
G203414 NA other upstream 830032 91622001 ~ 91624293 (+)
G204593 NA other downstream 220730 92681346 ~ 92682355 (+)
G205404 NA other downstream 910777 93371393 ~ 93388550 (+)
G205482 NA other downstream 941001 93401617 ~ 93402234 (+)
G205683 LOC106573085 other downstream 1335466 93796082 ~ 93798936 (+)

Expression


Co-expression Network