LOC110499952 (LOC106561617)


Basic Information

Item Value
gene id LOC110499952
gene name LOC106561617
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92869846 ~ 92881298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959225.1
GAGGGGAGTTTATTGAGGAGAGCAGAGTTGGGTCGCCTCCTGAGAGCTTCGACACAGCAGTCGcagcagacagagcagagcaACATCCAAGGTACTTTTAGGGGAAGCAATCAATCAGtttctctatcagtctctctctgtctctctcattgcTCGAGCGACTGCCGAAGCCGAAGGAATGGAACGTCAGTTGCTGTGCTGTGAAGTGGAGACCATCAGGAGAGCTTACCAAGACTCGAACCTGCTCAACGATAGAGTTTTGCAGACCATGTTAAAAGCCGAAGACAGCTATCTCCCAGCAACGAACTACTTCAAATGTGTACAGAAAGAGATTGTACCTTGCATGAGGAGAATTGTTTCTACATGGATGCTGGAGGTGTGTGAGGAACAGAAATGCGAAGAGGAGGTTTTTCCCCTCGCTATGAATTTTTTGGACAGATATTTGTCTGTTGAACCGACAAAGAAGACCCGACTACAATTATTGGGAGCTACCTGCATGTTTCTGGCATCTAAAATGAAGGAGACCATTCCTCTAACCGCAGAGAAGTTGTGCATATACACTGACAATTCCATCCGACCAATCGATTTGCTGcaaaTGGAACTACTAGTATTGAACAAACTGAAATGGGATCTAGCCTCAGTGACTCCGCACGATTTCATAGACCATTTCCTCTCCAAACTACCCATCCATCAGGACACCGAGCAAATCCTGCGCAAGCATGCCCAGACCTTTGTGGCCCTCTGTGCTACAGatgTCAAATTCATTGCCAACCCTCCGTCAATGATCGCAGCGGGCAGTGTGGCGGCTGCTGTGCAGGGGCTGCATCTGAAGATGGACGATGCAATGTCATCCCAGCAACTGACTTACTTCCTGTCCCAAGTCATCAGAAGTGACCCGGACTGTCTACGGGCGTGTCAGGAACAGATCGAGTCCTTATTGGAGACCAGTCTCCGTCAGGCACAGCAACACACTGTTTCCACGGACACCAAGAGCATGGATGAGGAGGTGGACCTCTCGTGCACGCCTACGGACGTGAGAGATGTGAACATCTGAGTGGGACAGTGTTGTCTGGTGCACTCCAAGGAGAGGCCATAGATGGAGGAGAGGGCTTCGGGGAGAGAAGAGGATGCGCTGATTGACACTGTCTCAGCAGCACCGCTCCCCGCTGACTGTGCTCTCACCTACTTACATACCTGCTCATAGCACTGGGACTGGTCTGGCCTGGCCTGAACGTCTTGTCTGGCTCCCAACATGTGTTGTAAGGGATCAGCCAGGTCTTCCTACATTGCTCTCTGTCCCTTCACTGGTTTAAGGCAGCATCAATTGGGCGTGGTTCCAAAACAAGCTTGAATAAGAGAAGAAAATGAGATGTAGTGCTGTATGTGCAACATAGACAAACTATAGAATAATGAACTAGGTCTTCTTTTTGTTCAACAGATTGAGAACCAAACACCTGCAATTCCTCACATAAAAAGCTAGTTTGAAGTTGTTTGATGACATAGGTGTTTTAAAGTGTGTTAAGTAAACCCACTTCTAAAGGAACAGAGGTTTTGCTGTGCCTGGTTTGTTTGGTATGTCCATGCTTGCCTCAACGATGAAACCAACTTTGAGATATTGTTTAGAAAATCGAGTCTTCTAACCTCCTGTTATTTTTAAATGGAGAATGTAACCATATACAATGTAATTTTGTTTAGCATACTTTTTTCAATTATCATCAGAGGACTGTGGATTACCTCTGTCATATCTGCTGACACACTGCCTTCGGAAGACAGCAAGCTAGCCAGTACGGTACAGTTACTTCAGAATGTCGTCAGGAAGAAGCCTACATTCTATTGTACTGAATACTTGCAGCATTGCATTCTGCCACAGAATGATTAGCTAGCTGTCCTGTATGCTCTCTCTATGTAAGTTAACATAGTCCACAGTCTTTATAGAAGTGTTACTCTGTCTTACTTTCTAAAAACATTCCATCAGAAACGCACTTTGGGTCAATAACTCTTTACTGACTATTTTTTGAGAAGAATGGAATGGTTTGGGAACAACGACAGACCTGCCTCAGGGATGTCTAAATGTGGTGTTATGTGGGAAAGGCAGGACATAGTAGGATGTTTTGGGGAAGTCTAATCTATTTATCCAGCTATAGTACCTGGACCCAAGCTTTCTTAATAGTAAAGACACAGTGAAAGATGGCGGTGCCATCCTCAAAAGAAGGCACCTTTCTATCAGTTCTCCTCATGATAGTTGATGACAGATTTGAACTTTTCTAACTGCTTGAATTGAATCTGAAGCTTGTAATTTATAGTTACATGAACAACAACTATTTATTGCACAATATTCTATTTTCAAGGCCAGTGTGGATCATGATGACAGAAGGCTATTTCATGTCAATATGTCAAACCATTCAATACTTTGAAAGGCATGCGAGGTGGAAGTAAACTCAAAATATTACTATGAAATCATTGCATTGGCTTAGTGTACTGAATGTTGAAGAAAAGCTCaaattaaaaaacaaaatgtttaaaatttTCCCCTGTCatcaaataaacatttaaaaggCTTTTATATCATTTTGCACAAAttcaaatatgtattttttgtatTGTTAGAGATCTGTGGAGGATGAATCTGGAAGACATAACTGAAGTTGCTAAGGGGTTGCTAGGGGAGTGAAAGGGGGCCATGAAGTACAGTATGTGGGTAAACTGCAGAATCAATGCGTttgattgtataatgacagaaaAATAACAAGTGAACACTCCTTAAAATCAGGCTGCTATGGAGGAATATTCCCAGCTAAGTTTCACGACTAaatgaaattaaaaataaaataaaaacaatgctTTCTTTTCTTATCAATTGTTTGCTGCTACTTTGTAGATATTTTTATTAAAATGTCAATATACTGCCATGTAATAAAATACATTATCTTATAGAAAAttatatga

Function

NR:

description
G1/S-specific cyclin-D1-like

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K04503 CCND1; G1/S-specific cyclin-D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959225.1 True 2946 mRNA 0.42 5 92869846 92881298

Neighbor

gene id symbol gene type direction distance location
LOC110499897 LOC106573100 coding downstream 430214 92398054 ~ 92443838 (-)
LOC110499887 NA coding downstream 441112 92427643 ~ 92428734 (-)
cry2 LOC106561609 coding downstream 604827 92233431 ~ 92265019 (-)
LOC110502383 LOC106561607 coding downstream 641098 92210330 ~ 92228748 (-)
LOC110533906 NA coding downstream 667815 92197336 ~ 92202031 (-)
LOC110499968 NA coding upstream 205963 93087261 ~ 93090465 (-)
LOC118936876 NA coding upstream 295012 93176310 ~ 93199900 (-)
LOC110499982 LOC106561633 coding upstream 456599 93337897 ~ 93372952 (-)
LOC110499989 LOC106573087 coding upstream 595763 93477061 ~ 93606905 (-)
LOC110502409 LOC106561641 coding upstream 878345 93759643 ~ 93925168 (-)
G205094 NA non-coding downstream 2886 92866743 ~ 92866960 (-)
G205085 NA non-coding downstream 20968 92848661 ~ 92848878 (-)
G205084 NA non-coding downstream 21547 92847896 ~ 92848299 (-)
G205079 LOC106561637 non-coding downstream 30156 92838667 ~ 92839690 (-)
G205006 NA non-coding downstream 52521 92817097 ~ 92817325 (-)
G205117 NA non-coding upstream 19582 92900880 ~ 92901083 (-)
G205121 NA non-coding upstream 25779 92907077 ~ 92907282 (-)
G205073 NA non-coding upstream 30169 92911467 ~ 92911812 (-)
G205072 NA non-coding upstream 30636 92911934 ~ 92912283 (-)
G205128 NA non-coding upstream 38181 92919479 ~ 92919692 (-)
G204024 NA other downstream 1081743 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 1278797 91589212 ~ 91591049 (-)
G202279 NA other downstream 2428421 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 3259956 89606837 ~ 89609890 (-)
G205192 NA other upstream 80746 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 1431126 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 1432092 94313390 ~ 94313918 (-)
G206750 NA other upstream 1446612 94327910 ~ 94328183 (-)
G207244 LOC100194703 other upstream 1735617 94616915 ~ 94617232 (-)

Expression


Co-expression Network