trnap-agg-3


Basic Information

Item Value
gene id trnap-agg-3
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93038166 ~ 93038237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-agg-3
ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg-3 True 72 mRNA 0.47 1 93038166 93038237

Neighbor

gene id symbol gene type direction distance location
trnap-ugg-3 NA coding upstream 3105 93034990 ~ 93035061 (+)
LOC110533914 LOC106561638 coding upstream 192360 92841792 ~ 92845806 (+)
LOC110499942 LOC106561637 coding upstream 198726 92837196 ~ 92839440 (+)
LOC110499936 LOC106561616 coding upstream 238182 92696182 ~ 92799984 (+)
LOC118943605 NA coding upstream 368422 92664825 ~ 92669744 (+)
trnap-ugg-4 NA coding downstream 2480 93040717 ~ 93040788 (+)
trnap-ugg-5 NA coding downstream 12079 93050316 ~ 93050387 (+)
trnap-agg-4 NA coding downstream 15297 93053534 ~ 93053605 (+)
trnap-agg-5 NA coding downstream 23449 93061686 ~ 93061757 (+)
trnap-ugg-6 NA coding downstream 26001 93064238 ~ 93064309 (+)
G205255 NA non-coding upstream 9058 93028907 ~ 93029108 (+)
G205250 NA non-coding upstream 20062 93017718 ~ 93018104 (+)
G205248 NA non-coding upstream 28340 93009597 ~ 93009826 (+)
G205208 NA non-coding upstream 62322 92975542 ~ 92975844 (+)
G205207 NA non-coding upstream 62902 92974983 ~ 92975264 (+)
G205269 NA non-coding downstream 9887 93048124 ~ 93067004 (+)
G205291 NA non-coding downstream 49026 93087263 ~ 93090300 (+)
G205349 NA non-coding downstream 140287 93178524 ~ 93195314 (+)
G205433 NA non-coding downstream 265420 93303657 ~ 93305171 (+)
G205405 NA non-coding downstream 298917 93337154 ~ 93337714 (+)
G204593 NA other upstream 355811 92681346 ~ 92682355 (+)
G204240 ckap5 other upstream 878263 92157275 ~ 92159903 (+)
G203646 cpa2 other upstream 1013424 92021755 ~ 92024742 (+)
G203551 NA other upstream 1190766 91826849 ~ 91847400 (+)
G205404 NA other downstream 333156 93371393 ~ 93388550 (+)
G205482 NA other downstream 363380 93401617 ~ 93402234 (+)
G205683 LOC106573085 other downstream 757845 93796082 ~ 93798936 (+)
G205688 NA other downstream 772123 93810360 ~ 93812169 (+)
G206285 NA other downstream 902249 93940486 ~ 93941471 (+)

Expression


Co-expression Network