trnap-ugg-5


Basic Information

Item Value
gene id trnap-ugg-5
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93050316 ~ 93050387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-ugg-5
ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

NR:

description
PREDICTED: serine/threonine-protein kinase Nek3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg-5 True 72 mRNA 0.58 1 93050316 93050387

Neighbor

gene id symbol gene type direction distance location
trnap-ugg-4 NA coding upstream 9528 93040717 ~ 93040788 (+)
trnap-agg-3 NA coding upstream 12079 93038166 ~ 93038237 (+)
trnap-ugg-3 NA coding upstream 15255 93034990 ~ 93035061 (+)
LOC110533914 LOC106561638 coding upstream 204510 92841792 ~ 92845806 (+)
LOC110499942 LOC106561637 coding upstream 210876 92837196 ~ 92839440 (+)
trnap-agg-4 NA coding downstream 3147 93053534 ~ 93053605 (+)
trnap-agg-5 NA coding downstream 11299 93061686 ~ 93061757 (+)
trnap-ugg-6 NA coding downstream 13851 93064238 ~ 93064309 (+)
trnap-agg-6 NA coding downstream 16927 93067314 ~ 93067385 (+)
ric8a ric8a coding downstream 18449 93068836 ~ 93084885 (+)
G205255 NA non-coding upstream 21208 93028907 ~ 93029108 (+)
G205250 NA non-coding upstream 32212 93017718 ~ 93018104 (+)
G205248 NA non-coding upstream 40490 93009597 ~ 93009826 (+)
G205208 NA non-coding upstream 74472 92975542 ~ 92975844 (+)
G205207 NA non-coding upstream 75052 92974983 ~ 92975264 (+)
G205291 NA non-coding downstream 36876 93087263 ~ 93090300 (+)
G205349 NA non-coding downstream 128137 93178524 ~ 93195314 (+)
G205433 NA non-coding downstream 253270 93303657 ~ 93305171 (+)
G205405 NA non-coding downstream 286767 93337154 ~ 93337714 (+)
G205404 NA non-coding downstream 327348 93371393 ~ 93388550 (+)
G204593 NA other upstream 367961 92681346 ~ 92682355 (+)
G204240 ckap5 other upstream 890413 92157275 ~ 92159903 (+)
G203646 cpa2 other upstream 1025574 92021755 ~ 92024742 (+)
G203551 NA other upstream 1202916 91826849 ~ 91847400 (+)
G205482 NA other downstream 351230 93401617 ~ 93402234 (+)
G205683 LOC106573085 other downstream 745695 93796082 ~ 93798936 (+)
G205688 NA other downstream 759973 93810360 ~ 93812169 (+)
G206285 NA other downstream 890099 93940486 ~ 93941471 (+)

Expression


Co-expression Network