LOC110499974 (LOC106561627)


Basic Information

Item Value
gene id LOC110499974
gene name LOC106561627
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93270955 ~ 93335518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577061.2
GTTGAGCCCATTATTACGAACGGGGCGCTAGTGAATTTATAAGGAGATGCTGTGACAGTCATAGATGAACTTTTACAAAGTAGGCTCCCTAGTTCACTCGTTTTGCCTACAACATGAGGTCGCCGACATTTGGACGAATCTAACCGCGCAGTTCGGGACAAGTCTGCGGGACAACCGTGCGCTTTCTGGACGTTTCATTTTATGCCAATGCGACGTAACTTGAATCGTTTCTACACGTCAAGGAATATTAGTTCTGGATTCTTTGTTTACCACGACTGAACTCTTTGGGGTAGAAGGCGTGGTGTGTGATGAACCTAGAGAGTGCGTGTGGTTACCAGGTCGGGGCGCGGAGCCCGCGGGAAGTGATGGAGCAGAAAGTCCAAGGTCAGCTGAACTTTGGCTTCCAGAGGAGTTCCACGTCAGACGACGACTCAGGCTGTGCCCTGGAAGAGTACGCCTGGGCACCGCCTGGCCTCAGACCCGAACTGGTCCAGCTGTATTTCGCATGTCTGCCTGAGGACAAGGTTCCTTACGTTAACAGTCCTGGAGAGAAGTTCAGAATCAAACAACTCCTCTATCAGCTGCCTCCACATGACAACGAGGGCCGCTACTGTCAGTCTCTcagtgaggaggagaagaaggagctCCACATGTTCAGTGTCCAGAGGAAGAAGGAGGCGCTGGGGAGGGGCTCTCTCAAACTCCTGCCCCGGGACCTGCTACACAGCGTCTGTGAACATTGTGGGGAGAGCATCAACGGAGGGGAGATGACGGTGTTTGCCTCCAGAGCGGGTCCTGGGCTGGCCTGGCACCCAGCATGCTTTACGTGCTCCACGTGTAGTGAGCTGCTGGTTGACCTCATCTACTTCTACCAGGATGGGAAGATCCACTGTGGCCGACACCACGCAGAGCTGCTCAAGCCACGCTGCTCAGCCTGCGACGAGGTCATCTTTTCTGACGAGTGTACGGAGGCGGAGGGGCGTCACTGGCACATGAAGCACTTCTCCTGTTTTGAATGTGAGACGGTGCTGGGGGGTCAACGTTATATCATGAAGGATGGTCGGCCATATTGCTGCGGCTGCTTTGAGTCTCTCTATGCCGAGTACTGCAAGGCCTGCGGGGAACACATTGGTGTGGACCACGCCCAGATGACGTACGACGGTCTCCACTGGCACGCCACCAAGGGTTGTTTCTGCTGTGCCCAGTGTAAGAGCTCTCTGCTGGGCTGTCCCTTCCTGCCCAAGCAGGGCCGGATCTACTGCTCCAAGGCCTGCAGTCTGGGAGAGGACGTCCACGCCTCAGACTCCTCCGACTCCGCCTTCCAGTCGACGCGCTCCCGCGAGTCCCGCCGCAGCGTCCGCATGGGCAAGAGCAGCCGCTCAGCCGACCAGTGCCGCCAGTCGCTCCTCTTCTCGCCCTCTGTCAACTACAAGTTCCCCGGGTTTACTGGTAACCCAGACACCGATACGCTCACCAACAAGCTGGCCCACCTGGGTTTAACCAATGAGGAGTGCttctggagggggagggaggacacCGAGGGCCCCGATGACCGGGGCGAGGAGGAGTGGGCCGAGCACGAGGACTACATGACCCAGCTGCTGCTCAAGTTCGGGGAGCACGGAGTCTTCCAGCAAGGTGAGGTGGTCGACTCCAGACCTCCAACCGATCTGTGGATGACCGAGGCTGAGGTCAAGATGAAACAGTGTGAGCCTCAGGGCTCTAGGGCTGAgaatggaggaggatgtggaggagggtCAGGCAGCCAGAGCCTGGCCAGTAAGAAGTACCAGACAGATATGTACTGGGCCCAGTCCCAGGACGGGCTGGGGGATTCGGCCTACGGGAGCCACCCTGGCCCGGCCAGCAGTAGGAAGCTCCAGGAGCTGGAGCACGGCACTGGGAGCATCGGAGGTACCAGCTTCCAGAGGGAGGAGAAGCAGTGGTATGACAACTCTCTGGAGTGCATCACAGACAAGGTGAAACGGACAGATCAGAGTGTCAGGGACTCCATGGACTCACTGGCACTGTCCAACATCACGGGTGCCTCTGTAGATGGCGACAGTAAAGAGAGACCTCTGGTCTACTCCTTACAGAGCTTCCAGGAACTCGAGgctgagagagactgtgagaaCACAAGCAACATGGGAACTCTCAACTCCTCCATGTTACACCGCAGTGCCACTTCCCTGAAGAGCCTTACGTCTGAGCTGGAGCAGGAGGAGAACGTACCAGAGGAAGAGAAggcccctcttccctctccccccaaGCATCCTCATGTCCCGGCGTTGAGACGGACTCGATCCCAGTCTCGACCCCAACAGGTGAAGTTCTCCCCAGACGTCGTGGACAACAGTCGCTATGGTGATCTGCAGGTGCGCCAGCCTCCGATGAGCGAGCGGACGCGGCGGCGAGCATACCATTTCGAGGAGCAGGACCAGGGGATTGGTGACTCGGGCTCCGGCCGCtatcacaaccaccaccacaggaGACGCCGCAGCCGCAAATCACGCTCCGACAACGCTCTCCACCTGGTGCCCAAGGAGAGGGCCAATCGCATATACTTCAGAGAGGACCACAGAGGTCATGGGGGACACGGCTTCAGCTCAAAGAGGCCCCAGCAGCTGGCCTTCCTGCCCAACCAGCAGGGGTATGGCCAGACCCAGCATCCCCACCGCCATCCCCACCAAGCCACCTCAGACTTCAGACTCCAGCAAGGCCCAGCCATGGAGAGGTTCTTGGGGTTGTGTGGGGacagggaccaggatgactggtGCTCCAcctgctcctcttcttcctctgagTCTGAGGAGGAAGGCTTCTTCCTGGGCCAGCCCATcccccagacacacagacactactATGATGGCCTGCCCAGCCCCAGCCACGTGGCAGGCCTGCCCTCCCCGCCTTACGGAGCAGTCCCACGGActatgtccaaaaagaagaaggGGCACAAGGGGAAGAACTGTATCATTTCATAAGACTTTTAAATGATACTCTGTCTGCAACCCCTTTCTGAATCTCGTTGTTGTTGCCACTATTGTGAATACAGAAATGGCCCGCTTGTTAAAACTGTCTTGCCAACTGGatgtaatacaaaaaaaaacagagttGCATAAACACATTTCAAAACTGTCATCATAATTGTATTAGAAAAAAATGTATGCAAATAACTCtgaacaaatgtatttatagaaACACCATTTAGTGAGTAGCGGAAATGACTATTTAACAGTGCAGATATGAATGTATATATTGTAAAGTGTAATTGTTTTTATAACCCTGAGTCAAATGTTTTTGTAGTGGAAGGCATTGAAAGATAAAACTGATAGCAGTTATCAAAGAACCTTCTCTTTTCTTAACCAGGGTTTGAAAAATGAAATATATGATATGCTGCCAGCAAAGGTATTCAGAGTGCAGAGTTTGACCCTGGGCCTGGTTTCCCAAAAgctatttcctggttgctaaaattcaaatagttcccctaatttcagtttgtgtgacAAGACAAGCAAGTATAGTaccatttgggggggggggggggac
>XM_036959260.1
ggaaggaggctGAGTCCgcagagagagaaactgaaagaggagaggttgctgtcctggaTTTTTTTTAGCTGCAATAGAGGGAGATTGAAAGAGGAGGGGCTGGGCCAAGAGCCATGTTGCCCAGAGCCAGTGGAGAATAACAGACAGGCCTGAGTCTTGATAAAAGCTTAGGAGAGCTTTCTGCACAGAGTAGAAGGCGTGGTGTGTGATGAACCTAGAGAGTGCGTGTGGTTACCAGGTCGGGGCGCGGAGCCCGCGGGAAGTGATGGAGCAGAAAGTCCAAGGTCAGCTGAACTTTGGCTTCCAGAGGAGTTCCACGTCAGACGACGACTCAGGCTGTGCCCTGGAAGAGTACGCCTGGGCACCGCCTGGCCTCAGACCCGAACTGGTCCAGCTGTATTTCGCATGTCTGCCTGAGGACAAGGTTCCTTACGTTAACAGTCCTGGAGAGAAGTTCAGAATCAAACAACTCCTCTATCAGCTGCCTCCACATGACAACGAGGGCCGCTACTGTCAGTCTCTcagtgaggaggagaagaaggagctCCACATGTTCAGTGTCCAGAGGAAGAAGGAGGCGCTGGGGAGGGGCTCTCTCAAACTCCTGCCCCGGGACCTGCTACACAGCGTCTGTGAACATTGTGGGGAGAGCATCAACGGAGGGGAGATGACGGTGTTTGCCTCCAGAGCGGGTCCTGGGCTGGCCTGGCACCCAGCATGCTTTACGTGCTCCACGTGTAGTGAGCTGCTGGTTGACCTCATCTACTTCTACCAGGATGGGAAGATCCACTGTGGCCGACACCACGCAGAGCTGCTCAAGCCACGCTGCTCAGCCTGCGACGAGGTCATCTTTTCTGACGAGTGTACGGAGGCGGAGGGGCGTCACTGGCACATGAAGCACTTCTCCTGTTTTGAATGTGAGACGGTGCTGGGGGGTCAACGTTATATCATGAAGGATGGTCGGCCATATTGCTGCGGCTGCTTTGAGTCTCTCTATGCCGAGTACTGCAAGGCCTGCGGGGAACACATTGGTGTGGACCACGCCCAGATGACGTACGACGGTCTCCACTGGCACGCCACCAAGGGTTGTTTCTGCTGTGCCCAGTGTAAGAGCTCTCTGCTGGGCTGTCCCTTCCTGCCCAAGCAGGGCCGGATCTACTGCTCCAAGGCCTGCAGTCTGGGAGAGGACGTCCACGCCTCAGACTCCTCCGACTCCGCCTTCCAGTCGACGCGCTCCCGCGAGTCCCGCCGCAGCGTCCGCATGGGCAAGAGCAGCCGCTCAGCCGACCAGTGCCGCCAGTCGCTCCTCTTCTCGCCCTCTGTCAACTACAAGTTCCCCGGGTTTACTGGTAACCCAGACACCGATACGCTCACCAACAAGCTGGCCCACCTGGGTTTAACCAATGAGGAGTGCttctggagggggagggaggacacCGAGGGCCCCGATGACCGGGGCGAGGAGGAGTGGGCCGAGCACGAGGACTACATGACCCAGCTGCTGCTCAAGTTCGGGGAGCACGGAGTCTTCCAGCAAGGTGAGGTGGTCGACTCCAGACCTCCAACCGATCTGTGGATGACCGAGGCTGAGGTCAAGATGAAACAGTGTGAGCCTCAGGGCTCTAGGGCTGAgaatggaggaggatgtggaggagggtCAGGCAGCCAGAGCCTGGCCAGTAAGAAGTACCAGACAGATATGTACTGGGCCCAGTCCCAGGACGGGCTGGGGGATTCGGCCTACGGGAGCCACCCTGGCCCGGCCAGCAGTAGGAAGCTCCAGGAGCTGGAGCACGGCACTGGGAGCATCGGAGGTACCAGCTTCCAGAGGGAGGAGAAGCAGTGGTATGACAACTCTCTGGAGTGCATCACAGACAAGGTGAAACGGACAGATCAGAGTGTCAGGGACTCCATGGACTCACTGGCACTGTCCAACATCACGGGTGCCTCTGTAGATGGCGACAGTAAAGAGAGACCTCTGGTCTACTCCTTACAGAGCTTCCAGGAACTCGAGgctgagagagactgtgagaaCACAAGCAACATGGGAACTCTCAACTCCTCCATGTTACACCGCAGTGCCACTTCCCTGAAGAGCCTTACGTCTGAGCTGGAGCAGGAGGAGAACGTACCAGAGGAAGAGAAggcccctcttccctctccccccaaGCATCCTCATGTCCCGGCGTTGAGACGGACTCGATCCCAGTCTCGACCCCAACAGGTGAAGTTCTCCCCAGACGTCGTGGACAACAGTCGCTATGGTGATCTGCAGGTGCGCCAGCCTCCGATGAGCGAGCGGACGCGGCGGCGAGCATACCATTTCGAGGAGCAGGACCAGGGGATTGGTGACTCGGGCTCCGGCCGCtatcacaaccaccaccacaggaGACGCCGCAGCCGCAAATCACGCTCCGACAACGCTCTCCACCTGGTGCCCAAGGAGAGGGCCAATCGCATATACTTCAGAGAGGACCACAGAGGTCATGGGGGACACGGCTTCAGCTCAAAGAGGCCCCAGCAGCTGGCCTTCCTGCCCAACCAGCAGGGGTATGGCCAGACCCAGCATCCCCACCGCCATCCCCACCAAGCCACCTCAGACTTCAGACTCCAGCAAGGCCCAGCCATGGAGAGGTTCTTGGGGTTGTGTGGGGacagggaccaggatgactggtGCTCCAcctgctcctcttcttcctctgagTCTGAGGAGGAAGGCTTCTTCCTGGGCCAGCCCATcccccagacacacagacactactATGATGGCCTGCCCAGCCCCAGCCACGTGGCAGGCCTGCCCTCCCCGCCTTACGGAGCAGTCCCACGGActatgtccaaaaagaagaaggGGCACAAGGGGAAGAACTGTATCATTTCATAAGACTTTTAAATGATACTCTGTCTGCAACCCCTTTCTGAATCTCGTTGTTGTTGCCACTATTGTGAATACAGAAATGGCCCGCTTGTTAAAACTGTCTTGCCAACTGGatgtaatacaaaaaaaaacagagttGCATAAACACATTTCAAAACTGTCATCATAATTGTATTAGAAAAAAATGTATGCAAATAACTCtgaacaaatgtatttatagaaACACCATTTAGTGAGTAGCGGAAATGACTATTTAACAGTGCAGATATGAATGTATATATTGTAAAGTGTAATTGTTTTTATAACCCTGAGTCAAATGTTTTTGTAGTGGAAGGCATTGAAAGATAAAACTGATAGCAGTTATCAAAGAACCTTCTCTTTTCTTAACCAGGGTTTGAAAAATGAAATATATGATATGCTGCCAGCAAAGGTATTCAGAGTGCAGAGTTTGACCCTGGGCCTGGTTTCCCAAAAgctatttcctggttgctaaaattcaaatagttcccctaatttcagtttgtgtgacAAGACAAGCAAGTATAGTaccatttgggggggggggggggac

Function

NR:

description
prickle-like protein 1

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577061.2 False 3549 mRNA 0.55 8 93270955 93335518
XM_036959260.1 True 3449 mRNA 0.55 8 93308703 93335518

Neighbor

gene id symbol gene type direction distance location
ric8a ric8a coding upstream 186070 93068836 ~ 93084885 (+)
trnap-agg-6 NA coding upstream 203570 93067314 ~ 93067385 (+)
trnap-ugg-6 NA coding upstream 206646 93064238 ~ 93064309 (+)
trnap-agg-5 NA coding upstream 209198 93061686 ~ 93061757 (+)
trnap-agg-4 NA coding upstream 217350 93053534 ~ 93053605 (+)
LOC110502396 LOC105018284 coding downstream 37789 93373307 ~ 93376905 (+)
LOC118936880 NA coding downstream 287515 93623033 ~ 93624085 (+)
LOC118936881 NA coding downstream 380571 93716089 ~ 93721762 (+)
LOC110500011 LOC106561648 coding downstream 810145 94145663 ~ 94149467 (+)
dnm1l LOC106561645 coding downstream 814913 94150431 ~ 94172796 (+)
G205349 NA non-coding upstream 75641 93178524 ~ 93195314 (+)
G205291 NA non-coding upstream 180655 93087263 ~ 93090300 (+)
G205269 NA non-coding upstream 203951 93048124 ~ 93067004 (+)
G205255 NA non-coding upstream 241847 93028907 ~ 93029108 (+)
G205250 NA non-coding upstream 252851 93017718 ~ 93018104 (+)
G205405 NA non-coding downstream 1636 93337154 ~ 93337714 (+)
G205404 NA non-coding downstream 42217 93371393 ~ 93388550 (+)
G205486 NA non-coding downstream 73582 93409100 ~ 93409698 (+)
G205506 NA non-coding downstream 114661 93450179 ~ 93450605 (+)
G205520 NA non-coding downstream 136104 93471622 ~ 93471824 (+)
LOC110499942 LOC106561637 other upstream 432828 92837196 ~ 92839440 (+)
G204593 NA other upstream 588600 92681346 ~ 92682355 (+)
G204240 ckap5 other upstream 1111052 92157275 ~ 92159903 (+)
G203646 cpa2 other upstream 1246213 92021755 ~ 92024742 (+)
G203551 NA other upstream 1423555 91826849 ~ 91847400 (+)
G205482 NA other downstream 66099 93401617 ~ 93402234 (+)
G205683 LOC106573085 other downstream 460564 93796082 ~ 93798936 (+)
G205688 NA other downstream 474842 93810360 ~ 93812169 (+)
G206285 NA other downstream 604968 93940486 ~ 93941471 (+)

Expression


Co-expression Network