LOC110499982 (LOC106561633)


Basic Information

Item Value
gene id LOC110499982
gene name LOC106561633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93337897 ~ 93372952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577074.2
ACTTACTCTTCGTAGCATATTGCACTTCACCAATCAACAACGAAGAGCTAGGATTTTGGTGGCGTTTGTTGTCGAAAGTTGCAAGAGCAGAAAGGTTTTACACCATCCCACACCATATCCCCCTGAGGagcccttcatcatcatcatcgtcatcatcatcaacaacaacaacaataaTGCCCAGGCGAAGGAAAAGTAGAATCCGAGAGGCCTATGACGAGCACTTTTCAGAGAGCGTGggaacATACCCAAGAATTGTGAATGCTGTCGAGAGGAGGACGGCTGTGACAAGACTGGAGCAAGACTATGACAGAGAATTTGAATACGAAACCAATCAGTATAGCGGCATTCGAAGTTACCATGATGATGACCACAGAGGACACCGTAGCGACAGGATACACACAGGAAGTGATCGAGGATACCATGGTGACAGTACACCTATAGGAAGCTTCCGAGTGAGGAATTCCCCACCTCCCCGACAAGAGGATTACAGAGATTGCTACTACAGGGACTCCAGAGATGATTCTCTGATGGGGCATCAAGGAGAGATGAGGATAAGCAGCAGAGCGGGCTCCCACCTCAGCAGCAGAGTTAAAGGAATAGCTCCTCTCTCGAGGACCGTGTCTTCAGCAGCTAACCCCGATAGAGTGGACCCCAATCTGATGCAGGCCCTCATCTACTTGGACCGAGGAGAGGACCCTGAGGGTCTTAGGCGAAGGGGCCTGGAACCCTACCCTGCTGGCCCAGCCGGGGACACTTACAAAACAGTACGGGATCGCTCTCCCGTCAGGATGGATATCCCACCAGGCCCTGTTATCATGCGCTCTGGGTCCAACACCAGCAAAAGGAGCTACTCCCCAGACAGGGACCAGAAGAGCTTCTCCTACCAGCAGAGCCAGCAGAAGAGGTATAACGAAGAGCCACAGAGCCAGAACAGAGAACCTGATAAGCCCAGGTTGCTAAGCCACACCAGAAGTACCTCCCTAGACGGATCAGCGAAAAGCTATGTAGCAATCAAGGAGGAGAGTGTCCCCACGCCAGCCCTGCTAGCGGGGCCGAAGGAGACGGTGTCGGCCAAGGAGACTGTCTCGGCCACGGAGGATACGGAGCAGACGCAGGACAACTTTAAGACACGGCGCTCTCAAGCCATCGCAGCTAAAGCGCTGGAAATCGAGAAGCGGTACAAGCAGGACTGCGAGACATTTGGCACGGTGGTAAAGATGCTGGTTATCAAGGAGCCCAGTCTGGAGAAGATGCTTCAGAACCCTCTGAAGGACAACCTGATTGAGATCAGGGAGCGTTGCCTTGACGACCTCCGACACTTCATCATAGAGCTGGACCAGGTCATAAAGCCCCAACCATCAACATGAGGGGGGGACCACAAATCCCCTTACTACATGCCAGGATTGATGGACCAGAGGTGGAGTTTGGCCAGTGGTATAGACATTGTGACCCTGTGTGCAACCCTGTGTGATATTCTCTCAATACTGTGTCAATAAGAGGGAAACATTCACATTCAAGTAACATTTTAACCTAAAAATAATTGGTCACAAAAAAAAAGTTACTTGATTTTATTGAAAACATGCTTAATTTAGAATAAGTGTTTTATtttcaccaaccttttctgagtcgaAATGCAAGTCCATATCTACCACTCAGATGTTTTCTAAATATGACTTGAATAACCTAAGCCTGTGctacattaaccaattaaaaacagttctgtagcaatgaggtttgtacagtaagctataggcccaatacattatcactgcatattggcttcGCTTTAATTTCCCTGCCAACGCATTGTTGTTcggatcatttaaaaaatatatatttcaaaattTGAGGTAAGCTATATGATCACACAGTAATATAGATcagttgttgtattacttgtgagtcGAAGCTAAGTGAGcatatttaaataataaataattttactgggctgatggggCCTGTATCTGATGGTCAGGCTCAGCAGTCGGCCTCTCAACATCCCTGTACTCTCCCTTTCCTccgctgacactgaccaaaaacgACACTGTCATCCAGCTGATGGCGGATCTGGACTCGCAtcattctcagtctctctctcctaatggttttgaaatctcacagtgtCTGTAGCTTTCCTTCACGCCTGCTACGTTACTGCAGACACGGTcatctgagccatccgattggccagcggtaggcctgTAGTGCACTTCATTTGCTCTGCAGGCCCGCcgggaaggcagagtttgtatcttcagacaaatgaaatggttcaaaattgAAACACTTCGCCTACCCGGCGTGCAGGgcagctgaatcaagtgcacctaccggcaACAGTGTAAGACAAAACAATTATACAAAcgcaagatatatatatatttttttacataaatgttTGAGATTGACAAGAAATGCCTTAGAGATCGACCAGTTGGTCACCACTGCTTTGGGGAGGTCATAGAagaaaatatgaagaaaaaaacgaAGCGTTCTAATTTGATTGGCTTGTTTCAATGCTGTTCTAGATTTCAGACTTGAAAAGAGAATTCTGCCGTCGTTACTCTAGATGTCCAGCTGTCATTTCTTTACTCTGTCATCCACTACCACTGGCTTTCTGACCAAGTACTAAACAACCTGATCATACAGACTTTGCATATTTTTGTGTATTTACATCTTATTTTCTATTTGGTAATAAAAGTGATGTAACAA

Function

NR:

description
uncharacterized protein LOC110499982

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577074.2 True 2715 mRNA 0.46 11 93337897 93372952

Neighbor

gene id symbol gene type direction distance location
LOC118936876 NA coding downstream 137997 93176310 ~ 93199900 (-)
LOC110499968 NA coding downstream 247432 93087261 ~ 93090465 (-)
LOC110499952 LOC106561617 coding downstream 456599 92869846 ~ 92881298 (-)
LOC110499897 LOC106573100 coding downstream 898265 92398054 ~ 92443838 (-)
LOC110499887 NA coding downstream 909163 92427643 ~ 92428734 (-)
LOC110499989 LOC106573087 coding upstream 104109 93477061 ~ 93606905 (-)
LOC110502409 LOC106561641 coding upstream 386691 93759643 ~ 93925168 (-)
LOC110499999 LOC106561640 coding upstream 561463 93934415 ~ 94085913 (-)
LOC118943611 NA coding upstream 564633 93937585 ~ 93940374 (-)
LOC110500006 LOC106561642 coding upstream 727996 94100948 ~ 94141288 (-)
G205932 NA non-coding downstream 21482 93316177 ~ 93316415 (-)
G205919 NA non-coding downstream 35094 93302124 ~ 93302803 (-)
G205839 NA non-coding downstream 73314 93169875 ~ 93264583 (-)
G205872 NA non-coding downstream 112831 93221568 ~ 93225066 (-)
G205873 NA non-coding downstream 112958 93221734 ~ 93224939 (-)
G205946 NA non-coding upstream 13037 93385989 ~ 93387209 (-)
G205993 NA non-coding upstream 51751 93424703 ~ 93424920 (-)
G206010 NA non-coding upstream 72450 93445402 ~ 93446002 (-)
G206011 NA non-coding upstream 73855 93446807 ~ 93447084 (-)
G206012 NA non-coding upstream 77369 93450321 ~ 93450530 (-)
G205192 NA other downstream 374963 92962044 ~ 92962934 (-)
G204024 NA other downstream 1549794 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 1746848 91589212 ~ 91591049 (-)
G202279 NA other downstream 2896472 90377557 ~ 90441425 (-)
G206742 LOC106561643 other upstream 939472 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 940438 94313390 ~ 94313918 (-)
G206750 NA other upstream 954958 94327910 ~ 94328183 (-)
G207244 LOC100194703 other upstream 1243963 94616915 ~ 94617232 (-)
G207249 NA other upstream 1256485 94629437 ~ 94629739 (-)

Expression


Co-expression Network