LOC110499989 (LOC106573087)


Basic Information

Item Value
gene id LOC110499989
gene name LOC106573087
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93477061 ~ 93606905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577085.2
agaggagagaggcaccGGCAGATGCTGAAACTGTTACTATTACTACCACCATCGCTACTAGTGTATCCATTACAGTCAGTGCTTCTATAAGAGCATTTCTCTAGTACAACCAGCTGGAGCTTTTCTGTGGTTGTCTGTGAACGACTGTGTGGGTTTGTTTacgactgtgtgtgtgaatgagtgtgtgatgCCCTGTACAGAGTGACTGATGAGAACGGGTGCACTGGTCTGGAGGGTGACCCCGTCCGTACAGTTCCACTGCCGCTGCTGTCGCTCGGGGACGATTGGACGTCCGGCGTTGCCACGACGACTAGAATGGGCTGCAATCTGTGCACTTTACAGAAACGAGAGGAACACTATAAGCTGCTGTATGAGATCGCACAGGTGAATGGGAAGGACCTCTCCAAGGCCAGTCATGACGAGGCAGTGGAGGCGATCCGCTCTGCTAAGGACCCCATTGTGGTGCAGGTGCTCAGGAGGAACCCTGTTAGCCACGGAGGACATGTTGGCTCCACTCAGGAAGTGCACGTGGTGGACGTTTGCACGCAGACAGACATCACCTTCGAACACATCATGGCCCTGGCCAAGCTCCGAGCCACCACCCCTCCCGTGCCTGACATCTGCCCTTTCCTGCTGTCTGACAGTTGTCACTCTCTCCACACTATGGAGCAGGAGTTCTATGAGGGGACAGACTACCTCTCCACCCTCCCAGACcaacagaggacagaggagttTGAGTACGAGgaGGTGGAGCTGTGTCGACTCAACAGCCAGGAGAAGCTGGGCCTGACGTTGTGCTACAGGACAGATGAGGAGGAGGACATGACCATCTACGTCAGCGAGGTTGGGCCAAACAGCATCGCTGCAAGGGATGGACGCATCAGAGAAGGAGACCACATTTTACAGATCAATGGTCAGGATGTGCAGGACAGAAAGGAGGCTGTAGCGGTGCTCTCTAGTGAAGATACTAGGAAATTCGTACTGCTGGTTGCCAGGCCCGAGATACAgcTGGAGGAAGCATGGTTGGATGATGAACACAGTGAATTCCTGGAGCAACTGAAGATGGAAATGTTGGAAGAGcaacagagagaagagatggagctAGAGGCACTTCAGGAGAAGACCAAAGGAGAAGAGGATGACATCACTGCCACCTGTTCCTCCAGAACTCAGGACAGTGGGCTGGGGATGTCGTTAAGGAACAGCATCGACGCCCCCGACCACAACGCCCTCCTATCCCACATCCAACGGAGACTCTCCCAATGTCTGAGGGACAGACAGGACTGTCCCACGCGTCTGGacgaagaagaagaggaggaggagggggaagaggaggatgttgcaGAGGATGGAGATCGGTTCCAGCAGCTCCTGGAGCTGAAGTGTCAGATCCGTAACAGCGGCGAGTATGACCTGATCTATAGCAGACGCAGCACTATAGAGTGTAGGCTGGGAGAGCCAGCCGGTGGCGTGCAGCGTGAGCTCCGCATGCTCAATGACGAGCTCCGTAGCATCGAGCTAGAGTGCCAGAACATCATGCAGGCACACAAGCTCGGCAAGGGGCCGGTGGGGTCCCAGTGGAACCAGGGGCAGCAAGTGTTTCCCCAAATTGTCTGCCCCACACCTAAGGACCAAAGCTCCCACCTGGGGTGCAATGACTCACCTAGAAGAAGCAAGCTGGTGGACATCAACGAGTGTCCGGAGAAGCCGGAGAAGTCAGACAAGGACAGCTCGAGTGCCTACAACACTGCAGAGAGCTCTCGCAGCACGCCGCTGGCAATGGACCGCTCTCCTGAGCACTCCCTTCAGAGGAGGATGGTGACCATCACCAACCAGAGGAACCTCCGCAGCAGCATGGCCAGCCTCCACACTATAGCCAGCCCCAGCCCCAAACACCGGCCTCTCCACTGGGCCCCCATCCCAggcaaggccagcatcccagaccACAGCCTTTACCCCTCCGAGTCGGACAAGGTGTCCCCTGCAGACAACGAAAGGAGTGGGTTGGGGAACTGGAAGGTGAAGCCTCAGCCTCCTCCCAGGGCCTCCCAGATCCCTTACCTATCCCCGTCCCATGACTCCCAGCACCGCCAGCCCAACGGCAACATCCCGGCCCACGCTCGCCACTACCAGAGCTACATGCAGCTGATTCAGCAGCGCTCGGCTGCGGAGTACGCCCAGAGCCAGCTGAGCCTGCTCAGTGGGGTCAAGGAGCCCCAGCTGAGCCCCGCCATCGAGCCTAAGATGGAATGGAAGGTGAAGATCCGTTCGGACGGCACGCGCTACATCACCAAGAGACCAATCAGGGACAAGATCCTGCGGGAACGCGCCCTGAAGATCAAAGAGGAGCGTAGCGGAGGGATGACCACGGACGACGACGCTATGTCCGAGATGAAGATGGGGCGgtactggagtaaagaggagaggaagcaGCATCTGGTCAGGGCTAAAGAACAGCGGAGGAGACGAGAGTTCATGCAGCGCAGCCGACTGGAGAGCCTGAGGGAGAGTCCTCAGAGCAGCAACGAAGGACGCAAGGAGGTcagcatcatcgaactgagcCACAGGAAGATGATGAAGAAGCGCAACAAGAAGATCCTGGACAACTGGATGACCATTCAGGAACTGATGACTCACGGGGCCAAGGCCCCTGATGACCCCAGGGCCAAAGTACATAAGGCCTTCCTGTCAGTCACCACTGTATAATATACAACTAACACataacattctatagcagtgtTTCTCAACCGTATTGATACCAGGAACCAGCAAGCTATGGCCCTACCCCGGTGAGCAACATCCCAGGGACCGGTGCTGGTCTCCGGACTGGAATTTGAGAAACACTGATCTACAGTACCCCATGTGGTATTATATACTTGCCTCGTTCAATGTGGCGTTTTTATGAGGGCGATAGGAATATTTTTCACAACTTTGTTACCCGAAAAATAGCATTTTCTAAAGAATTTTAACCAATGGTTTCCATGGcattaaaaaaatctgtttttcatTATTTCTCTCTGTTCCAGAAACACTTTTGTATGAGATTACTGAGCAATTATTTTTCTTAGTTCATCCTGTAACTGTAATTACCTGCATAGTGTTCAATTATTTTCATATTTCTGTTCTGTTATGCAGTGATTCCAACCCACACAGGTCAGAATATTTGTATGTACTCCCTCAGGGGGAGAGGCGTTCAACTGAATGTACAGTACAGAAATCCTACTTCTTGCAGGTCTAGATTTGATAAACCAGCCATTTGATTTGTCCTTTAAAGGGACACTTCGGGATTTtggtatgaaggaagttagaggtaggtttccgagccaatgctaactagcgttagcgcaatgactggaagtctatgggtatcagCCAGCATGCTAGCagtttgggctcccgagtggcgcagtggtaaaaggcactgcatctcagtgctagaggcatcactacataccctgtttcgattccaggctgtatgacACCTGGCCATGATAGGGAGTCCCATAGGCCGGagaacaattggcccagagtcatcCGGTttagggtttgaccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctggttaaatataaAAATGAAAAGTAAAAGATTACCATAGACTTAGTCATTGCGCTATTtacaacttccttcaaactgcacgcagagacataaaaatggtattcacaagttcatctgactctggggaagtagataaagtgcCTCTGCCAAAATACGAAGTTTCCCTTTAAAGGTCATGAACAGTCAAAATAATGTCTTTCATGAAATTGGATAATATTTGGATGAAACTAGATCAAGGTTCTtctacattgataaagtttgatcatagagtcactggtccccccccccccatgtcaaaAACTTGGATTCAGGAGGTGGGATTATTAAGGGGATAGGGTGACATCACTCTAACTctctcattttaatacaccaatggtaacatTATATTCTAttacctaatttaaataagtGCCGCCTTGTAACCAACATTGGAGAAGGTGTGTTTGCAGAAGGGCATGGTTTTTATAGTTAGATAGCTACTCTACTAGTGACAACATATCAGTGGGTTGGGTGTCAGCAAATACAATTAAACATTTACCCTATTCATCTATAATGGCAAAGATActtagttgaagtcagaagtttacatacaccttaggcaaatacatttaaactccgtttttcacaattcctgacatttaatcctagtaaaaattccctatcttaggtcagttagg

Function

NR:

description
PDZ domain-containing RING finger protein 4-like

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577085.2 True 4276 mRNA 0.50 8 93477061 93606905

Neighbor

gene id symbol gene type direction distance location
LOC110499982 LOC106561633 coding downstream 104109 93337897 ~ 93372952 (-)
LOC118936876 NA coding downstream 277161 93176310 ~ 93199900 (-)
LOC110499968 NA coding downstream 386596 93087261 ~ 93090465 (-)
LOC110499952 LOC106561617 coding downstream 595763 92869846 ~ 92881298 (-)
LOC110499897 LOC106573100 coding downstream 1037429 92398054 ~ 92443838 (-)
LOC110502409 LOC106561641 coding upstream 152738 93759643 ~ 93925168 (-)
LOC110499999 LOC106561640 coding upstream 327510 93934415 ~ 94085913 (-)
LOC118943611 NA coding upstream 330680 93937585 ~ 93940374 (-)
LOC110500006 LOC106561642 coding upstream 494043 94100948 ~ 94141288 (-)
LOC110500013 LOC106561647 coding upstream 564976 94171881 ~ 94180442 (-)
G206031 NA non-coding downstream 1342 93475490 ~ 93475719 (-)
G206030 NA non-coding downstream 1655 93474433 ~ 93475406 (-)
G206012 NA non-coding downstream 26531 93450321 ~ 93450530 (-)
G206011 NA non-coding downstream 29977 93446807 ~ 93447084 (-)
G206010 NA non-coding downstream 31059 93445402 ~ 93446002 (-)
G206111 NA non-coding upstream 5916 93612821 ~ 93613033 (-)
G206136 NA non-coding upstream 55531 93662436 ~ 93663786 (-)
G206167 NA non-coding upstream 147196 93754101 ~ 93754705 (-)
G206192 NA non-coding upstream 152153 93759058 ~ 93759270 (-)
G206215 NA non-coding upstream 213246 93820151 ~ 93820585 (-)
G205192 NA other downstream 514127 92962044 ~ 92962934 (-)
G204024 NA other downstream 1688958 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 1886012 91589212 ~ 91591049 (-)
G202279 NA other downstream 3035636 90377557 ~ 90441425 (-)
G206742 LOC106561643 other upstream 705519 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 706485 94313390 ~ 94313918 (-)
G206750 NA other upstream 721005 94327910 ~ 94328183 (-)
G207244 LOC100194703 other upstream 1010010 94616915 ~ 94617232 (-)
G207249 NA other upstream 1022532 94629437 ~ 94629739 (-)

Expression


Co-expression Network