LOC110500006 (LOC106561642)


Basic Information

Item Value
gene id LOC110500006
gene name LOC106561642
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94100948 ~ 94141288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959407.1
CGGTTCCAAATCTAATGCAAACAACTAACCCGGTTCACCCGGGCCATTAATCCAATTCCCCTCAGTGGGCTGATAGTGGCAGGTGATAAATAGCCAATTGTAGGTCAGATCAAAGACCGCGTGATCattgttttcctctgttttttgttgttgtccgtGGATTAAAACTGTCGAGTCGAATGACCCCAACACATACCGAGAAGCTTGTTGTGAACCGTGTTTACATGTTCGTTTGATTTCGCTGTTACGAGAGTCAATGAATTCTTCAGATTTCCACCAACCGTCATCAAGAAACTGCTTCATGAAGGAATAAACAAATGAAAGCTGCCTTCCAAGACCAAGAGGGATGTCTCTGAGATGTGTTCCAGATTCTTGTGTGTTCAAAGTAAGCAGAGCAGCGAACTTCTGGCATATACAAGGTCAACGAGCAGCATCACTTCCATTGTCTTCTCAGCAACATCCTCTTTGTAGGTTTGATGTCCGAGCAGGACTGAGCCACAAAGTTGGCTTTCTCAGCTGGAAGTATACCCACAGCACAAAAAGTAGAATTCGCAATAAGATATGGCTCTCCAGAGCTAGTCAGATAAGACACAGGCTTGGCCTCCACACCAGCGTCTACTACTTAAATACATCCACCTCACGCTGGTCCACTGGTCTCAGCCACACCATGTCACGCTTCAGGAGCACCCTGGACTCCGTCTCCAAGGCGGTGAGCGGGTCACACACTGAGCTCCTCTCCAAGATAGCCCGGCTCAAAGTCAAACCCAAACAGAAAGCCATTGAGGCTGGCAAAGTGTTGGAAGCCAGCCCGGAGATGGGGCTAACACCACAGGGTCATGGTACTGTAGGGTACCCAGCTctaaccccagccccagctctaaccccagccccagctctaacCCCAGCCCCAGTTCCTGCCTATACCTCCGCTAACACCACTGTTAATGCTAATGCACCTTCTCCAATCCCTGTCTCGGTGTCTGCCCCTAGTCCTCCacctactacagccactgcttcTACACCCACACCTACTCTATCTCCAACACTTACACCTACTCCATATCTTACACCTGGCCCTACTCCTGGCATTACCGCCAGCGCCCCTCCCATTGCCACCCCTCGCCCCAACATTGCCAGGGCAAATGCTGCCGTCTCAGGCTCCAGTTTCCAGGAagtcagacagaggagggtgCAGCGTGCAGCCACAGCATCCATTGTCCCAACCACTGTGGCCACCAACGGGACCACCAACGGGACCACCAAAAGGCTGGAGCAGGTCAGATCACCACTACCAACAGATAGTAGTGCACCTGAGAGAGCCACCACCACAGTCTcccaacagaccacaacacaactcTTCCATCCCAGCTCCTTCTCAGTTAACCTGGATGAGACCTACAACTACCTGTCCCACCACGTGAACTCGTACTTCAGCAGCATAACAAAGTCTGATGAGGAGAAAGAGCATAACACAGACCGTGGTTCCACTGACCTCCTGCCGTTGTCAGACAAAACGTCCCCAGGGTCTGCTGCACCCGTAAGTTCCCCATCTTCTAAAAAGGGTATCGGCCGTTACCTATCCTACTCTGGTGACACTGTACAGGCCTTTGTAGGGAGCTACATTGCTCCCCTGGTCCCCAGGTTTAGCAGGGCAGCGGCTGAACCCAAGAGTGCTGCTGTAGAGCAGAAGAGGCTGAAGGCAGAAGAGGCCGGGGCAAAGCCATGGCAAGGAGAGGTGGCGGTGAATACGGAACAGaaggctgctgaggagagggcCAAGAGACTGCTGCTCCAAAGAGAgaagATCATAGCTAGGGTGAGCGTGGACAACCGGACCCGGTCCCTGGTCAAGGCGTTAAACCGAGCGTCTGATGTCAGGGTCTACATCAACAGAGTGGAGGAGCTCAGCTTTCATCTACTGGAGTTTCCAGAGACCCGCGGGGTGGCTGTCAAGGAGAAGGCGATCCCGTGCCTACTGCGTCTCCGCCAGGCTGAGGACCCGTCTCTGAAGGCAGCAGTCAGGGAGGCCCTCACGCTGGTGGGATACACCAACCCTGTCAAGGGCCGGGGAATCAGGGTCCTGTCCATCGACGGAGGGGGAACCagGGGACTGATTGCCCTTCAGACTCTGCAGAAACTGGAAGCCCTGACGGGAAAACCCATCTACCAACTGTTTGATTACATCTGTGGTGTCAGCACAGGTTCCATCCTGGGCTTCATGCTGGGTGTGTTCCAGATCCCTCTAAATGAGTGTGAGGTGCTCTACAGGAAGCTGGGTTCTGACGTCTTCAAGCAGAACGTCATCGTGGGAACCGTCAAGATGGGCTGGAGCCACGCCTTCTACGACTCCGAGACCTGGGAGAACATTCTCAAAGAAAAAATGGGCTCTGATCTGATGGTGGAAACATCAAGAAACCCCAAATGCCCAAAGATGGCAGCAGTGAGTACCATCGTGAACAGGGGCACTCCTCTGAAGGCCTATGTGTTCAGGAACTATAACCTTCAGCCAGGGGTGCGCTCCCACTACCTGGGGGGCTGTGAACACAAGCTGTGGCAGGCCGTCAGAGCGTCCTCCGCTGCCCCAGGGTACTTCCAGGAGTTTGCCCTGGGACACGACCTTCACCAGgatGGAGGTCTCCTCATCAACAACCCCACAGCGTTGGCCATCCATGAGTGTAAATGCCTGTGGCCCAATACGCCGGTCCAGTGTGTGGTGTCACTGGGTACGGGCCGCGTGGAGACAGCTGGCAAAAACAACACCACGTACACCAGCCTCAAGACCAAGCTCACCAACGTCATCAGCTCTGCCACCGACACAGAGGAAGTCCACATCATGCTCGATGCCCTCCTTCCACCTGACTCGTACTTCCGCTTCAACCCTTATATAAACGAGGACATCGCCCTGGATGAGAGCCGTGGTGAGAAGCTGAACCTGCTGCAGGCCGAGGGCCTGCGCTATCTGGACCGGAACCAGGAGAAGCTGCAGAAAGCTGCCCGGATACTCACCAGGGACAAGACCACCGTCCAGAGGCTGACTGAGTGGGCCAAGCTCAAACATGACATGTACAATGGTATTCCCATCTTCAACTCCAAGCTGTAGGGGAGTAGGTCCCAGGCTCCCCCACCACACAACACTAACTTCACCTAATTCCCATCTTCAACTCCAAGCTGTAGGGAAGTAGGTCCCAGGCTCCACCACCACACAACACTAACTTCACCTAAAACTGGACTCTCTCCTAACACTGAATCCATTCATAGAGTAATAGACTGTATATGTTAGTCTCTGTGGTTGTAGACGGTGTATTTTAAATTGGTAGAATACGTTTACTGTTGTGTTTTTACTGCACCCATTTACGTGTTACTGCACCCATTTCCGTGTTACTGCACCCATTTACGTGTTACTGCACCTATTTACGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTACGTGTTACTGCACCCATTTACGTGTTACTGCACCCATTTGACAGTGACTGTTTGCATGCTCTGGCAGCacttggagagagaggggtctggCAACACttggagtggagggggagagagaggtctggCAACacttgggggggagggggagagagaga
>XM_036959412.1
GGCAAACCGGTTCCAAATCTAATGCAAACAACTAACCCGGTTCACCCGGGCCATTAATCCAATTCCCCTCAGTGGGCTGATAGTGGCAGGTGATAAATAGCCAATTGTAGGTCAGATCAAAGACCGCGTGATCattgttttcctctgttttttgttgttgtccgtGGATTAAAACTGTCGAGTCGAATGACCCCAACACATACCGAGAAGCTTGTTGTGAACCGTGTTTACATGTTCGTTTGATTTCGCTGTTACGAGAGTCAATGAATTCTTCAGATTTCCACCAACCGTCATCAAGAAACTGCTTCATGAAGGAATAAACAAATGAAAGCTGCCTTCCAAGACCAAGAGGGATGTCTCTGAGATGTGTTCCAGATTCTTGTGTGTTCAAAGTAAGCAGAGCAGCGAACTTCTGGCATATACAAGGTCAACGAGCAGCATCACTTCCATTGTCTTCTCAGCAACATCCTCTTTGTAGGTTTGATGTCCGAGCAGGACTGAGCCACAAAGTTGGCTTTCTCAGCTGGAAGTATACCCACAGCACAAAAAGTAGAATTCGCAATAAGATATGGCTCTCCAGAGCTAGTCAGATAAGACACAGGCTTGGCCTCCACACCAGCGTCTACTACTTAAATACATCCACCTCACGCTGGTCCACTGGTCTCAGCCACACCATGTCACGCTTCAGGAGCACCCTGGACTCCGTCTCCAAGGCGGTGAGCGGGTCACACACTGAGCTCCTCTCCAAGATAGCCCGGCTCAAAGTCAAACCCAAACAGAAAGCCATTGAGGCTGGCAAAGTGTTGGAAGCCAGCCCGGAGATGGGGCTAACACCACAGGGTCATGGTACTGTAGGGTACCCAGCTctaaccccagccccagctctaaccccagccccagctctaacCCCAGCCCCAGTTCCTGCCTATACCTCCGCTAACACCACTGTTAATGCTAATGCACCTTCTCCAATCCCTGTCTCGGTGTCTGCCCCTAGTCCTCCacctactacagccactgcttcTACACCCACACCTACTCTATCTCCAACACTTACACCTACTCCATATCTTACACCTGGCCCTACTCCTGGCATTACCGCCAGCGCCCCTCCCATTGCCACCCCTCGCCCCAACATTGCCAGGGCAAATGCTGCCGTCTCAGGCTCCAGTTTCCAGGAagtcagacagaggagggtgCAGCGTGCAGCCACAGCATCCATTGTCCCAACCACTGTGGCCACCAACGGGACCACCAACGGGACCACCAAAAGGCTGGAGCAGGTCAGATCACCACTACCAACAGATAGTAGTGCACCTGAGAGAGCCACCACCACAGTCTcccaacagaccacaacacaactcTTCCATCCCAGCTCCTTCTCAGTTAACCTGGATGAGACCTACAACTACCTGTCCCACCACGTGAACTCGTACTTCAGCAGCATAACAAAGTCTGATGAGGAGAAAGAGCATAACACAGACCGTGGTTCCACTGACCTCCTGCCGTTGTCAGACAAAACGTCCCCAGGGTCTGCTGCACCCGTAAGTTCCCCATCTTCTAAAAAGGGTATCGGCCGTTACCTATCCTACTCTGGTGACACTGTACAGGCCTTTGTAGGGAGCTACATTGCTCCCCTGGTCCCCAGGTTTAGCAGGGCAGCGGCTGAACCCAAGAGTGCTGCTGTAGAGCAGAAGAGGCTGAAGGCAGAAGAGGCCGGGGCAAAGCCATGGCAAGGAGAGGTGGCGGTGAATACGGAACAGaaggctgctgaggagagggcCAAGAGACTGCTGCTCCAAAGAGAgaagGAGAAGGCGATCCCGTGCCTACTGCGTCTCCGCCAGGCTGAGGACCCGTCTCTGAAGGCAGCAGTCAGGGAGGCCCTCACGCTGGTGGGATACACCAACCCTGTCAAGGGCCGGGGAATCAGGGTCCTGTCCATCGACGGAGGGGGAACCagGGGACTGATTGCCCTTCAGACTCTGCAGAAACTGGAAGCCCTGACGGGAAAACCCATCTACCAACTGTTTGATTACATCTGTGGTGTCAGCACAGGTTCCATCCTGGGCTTCATGCTGGGTGTGTTCCAGATCCCTCTAAATGAGTGTGAGGTGCTCTACAGGAAGCTGGGTTCTGACGTCTTCAAGCAGAACGTCATCGTGGGAACCGTCAAGATGGGCTGGAGCCACGCCTTCTACGACTCCGAGACCTGGGAGAACATTCTCAAAGAAAAAATGGGCTCTGATCTGATGGTGGAAACATCAAGAAACCCCAAATGCCCAAAGATGGCAGCAGTGAGTACCATCGTGAACAGGGGCACTCCTCTGAAGGCCTATGTGTTCAGGAACTATAACCTTCAGCCAGGGGTGCGCTCCCACTACCTGGGGGGCTGTGAACACAAGCTGTGGCAGGCCGTCAGAGCGTCCTCCGCTGCCCCAGGGTACTTCCAGGAGTTTGCCCTGGGACACGACCTTCACCAGgatGGAGGTCTCCTCATCAACAACCCCACAGCGTTGGCCATCCATGAGTGTAAATGCCTGTGGCCCAATACGCCGGTCCAGTGTGTGGTGTCACTGGGTACGGGCCGCGTGGAGACAGCTGGCAAAAACAACACCACGTACACCAGCCTCAAGACCAAGCTCACCAACGTCATCAGCTCTGCCACCGACACAGAGGAAGTCCACATCATGCTCGATGCCCTCCTTCCACCTGACTCGTACTTCCGCTTCAACCCTTATATAAACGAGGACATCGCCCTGGATGAGAGCCGTGGTGAGAAGCTGAACCTGCTGCAGGCCGAGGGCCTGCGCTATCTGGACCGGAACCAGGAGAAGCTGCAGAAAGCTGCCCGGATACTCACCAGGGACAAGACCACCGTCCAGAGGCTGACTGAGTGGGCCAAGCTCAAACATGACATGTACAATGGTATTCCCATCTTCAACTCCAAGCTGTAGGGGAGTAGGTCCCAGGCTCCCCCACCACACAACACTAACTTCACCTAATTCCCATCTTCAACTCCAAGCTGTAGGGAAGTAGGTCCCAGGCTCCACCACCACACAACACTAACTTCACCTAAAACTGGACTCTCTCCTAACACTGAATCCATTCATAGAGTAATAGACTGTATATGTTAGTCTCTGTGGTTGTAGACGGTGTATTTTAAATTGGTAGAATACGTTTACTGTTGTGTTTTTACTGCACCCATTTACGTGTTACTGCACCCATTTCCGTGTTACTGCACCCATTTACGTGTTACTGCACCTATTTACGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTGCGTGTTACTGCACCCATTTACGTGTTACTGCACCCATTTACGTGTTACTGCACCCATTTGACAGTGACTGTTTGCATGCTCTGGCAGCacttggagagagaggggtctggCAACACttggagtggagggggagagagaggtctggCAACacttgggggggagggggagagagaga

Function

NR:

description
PREDICTED: calcium-independent phospholipase A2-gamma-like

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959407.1 False 3749 mRNA 0.53 10 94100948 94141281
XM_036959412.1 True 3606 mRNA 0.53 9 94100948 94141288

Neighbor

gene id symbol gene type direction distance location
LOC110499999 LOC106561640 coding downstream 15035 93934415 ~ 94085913 (-)
LOC118943611 NA coding downstream 160574 93937585 ~ 93940374 (-)
LOC110502409 LOC106561641 coding downstream 175780 93759643 ~ 93925168 (-)
LOC110499989 LOC106573087 coding downstream 494043 93477061 ~ 93606905 (-)
LOC110499982 LOC106561633 coding downstream 727996 93337897 ~ 93372952 (-)
LOC110500013 LOC106561647 coding upstream 30593 94171881 ~ 94180442 (-)
LOC110500043 LOC106561646 coding upstream 42911 94184199 ~ 94221146 (-)
LOC110500065 LOC106561650 coding upstream 81078 94222366 ~ 94229545 (-)
LOC110500060 tnni3 coding upstream 91446 94232734 ~ 94243566 (-)
LOC110500075 LOC106561651 coding upstream 110130 94251418 ~ 94258833 (-)
G206605 NA non-coding downstream 522 94098236 ~ 94100426 (-)
G206645 NA non-coding downstream 12271 94088340 ~ 94088677 (-)
G206564 LOC106561640 non-coding downstream 15057 93934420 ~ 94085891 (-)
G206619 NA non-coding downstream 61425 94039060 ~ 94039523 (-)
G206565 NA non-coding downstream 159459 93940477 ~ 93941489 (-)
G206672 NA non-coding upstream 1456 94142744 ~ 94143233 (-)
G206673 NA non-coding upstream 2129 94143417 ~ 94143763 (-)
G206674 NA non-coding upstream 3168 94144456 ~ 94144779 (-)
G206722 NA non-coding upstream 131844 94273132 ~ 94273456 (-)
G205192 NA other downstream 1138014 92962044 ~ 92962934 (-)
LOC110499897 LOC106573100 other downstream 1661347 92398054 ~ 92443838 (-)
G204024 NA other downstream 2312845 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 2509899 91589212 ~ 91591049 (-)
G202279 NA other downstream 3659523 90377557 ~ 90441425 (-)
G206742 LOC106561643 other upstream 171136 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 172102 94313390 ~ 94313918 (-)
G206750 NA other upstream 186622 94327910 ~ 94328183 (-)
G207244 LOC100194703 other upstream 475627 94616915 ~ 94617232 (-)
G207249 NA other upstream 488149 94629437 ~ 94629739 (-)

Expression


Co-expression Network