LOC110500011 (LOC106561648)


Basic Information

Item Value
gene id LOC110500011
gene name LOC106561648
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94145663 ~ 94149467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577124.2
GTTTTCGTTTAGCGTAACGGAGCGTCAAAATAGAGCGACGCGATAACCGCTAGCCAACTGAAGTTATCCTTCGCAGTTCAGCAAAAAGACGCCACCAGCACCATGGCAACTGCACAGTCAGCGTTAACATTTGCAGTGTGTATCCTGATGATAACAGAGTTGATACTTGCCAAGAAGGACTACTATGACATACTGGGTGTGCGGAAAGATGCCAACGAGCGTCAGATAAAGAAGGCTTTTCACAAGCTGGCAATGAAGTATCATCCAGACAAGAACAAGAGCCCAGATGCTGAGACAAAGTTCAGAGGAATTGCTGAGGCATATGAAACATTATCAGATGAGAAGAGGAGACAAGAGTATGACCAGTTTGGTCACGGCACATTCTATAATGACATAACCAAAGACCGAAACGGTCCAAACGTCCACCAGCCCTTCAACTTCAACGACATGTTCAAGGACTTTGATATTTACAACCAGAACCGGCACTCCCATCACCAAAGGCACTTCGAGGATCACTTCCGGGCCCACCAGGAGGCCCACCACAGCAGACGCAAGAGACACTTCCAGGGTGTCTTTGGAGCAGCAGGTGGTGGTGGCGGCTTTGATGACATGTTTGACGACATGGAGAAGATGTTTACTTTTGACACGGACACTACTAAGCGGACGGAGAGCACATTTCAGGGTACTACAACGAAGCAACACTGCAGAACAGTGACACAGCGCAGGGGGAACATGGTCACCACGTACACTGACTGCACTGGCTCCTGAGGACAGAGGTCTTTTGTCGGTATCCACATCCTCTGGGTCGTGTTCATCAGGCACGAAATGGAAGAAAGCAGCCTGAAATGGGGAGGTActatctgaacttgtccaataagcaAGGCTTGTTTTCCATTGCATaacattttgaaatgtttctCTACGTTGTgctctaatgaacatgacccttgGCACAGCTTGCACATAGGCCCCTGTGGCGGGAGCAAGCTGTTTTTGTTGCTGCTGTGACCTAAGTGCTGGTCATTGCTATTTTGTTGAGTCACAGTAGCTAATGAAAACACTTTTTAGCACACTCAGTTTGTAATTTTTAACAATTTAATTACAGCACTGAAAAGCTTTTGAAGCATATTTCTCACACTATGGTTAGGAATGTAAATGTTGTAGAGAAATATTTTTTGGGTTGTGTTAAGTCTAATCTGGATCCAGATTTTTATTAGCTACTTAGAATTATATATATcattctatatactgtatatttcgaAACCCCCCCCTTAATATTTACATAGGATTTTTAAGGAGACGCTTTTCAGCTATTCATTATATAGTCCCTTGCAAACCTAAATATGCAATTGAACATAGTATCAGTATTGTTGCCTTAAGCAACTTCAATTGTTCAAGAGCAATTAATTTTTTTTCATGGGAGAATGTTTTCACTTGAGCTTTGTTATTGTAATTCGTCAGCCAAATAGTTTCAGTAACTACTACCACTGCTGAACCTAGACATTTTCTCTGTGCATGTAGTATTTTGTATAGCGTACAGCTCCATTGTGTGAATCCAGCAGCCTTTTGGTTGGAACAAAACAGTGTGGATAATGAACCGTGACAGGTTTGCTTTTGTTTGATAAATGGAGAACAACGTCTGCAAAAATGTTCCATCAGAACATGTACTGAAACTGTATGGCAGCATTTTGATGCTGCCTGAAGTtaccttttttttgtgtgttaagGGATGCTCGCCACTTTAAGTTGAAATTAGGAAAGAAATATTCAGATCGACAAGAACTTGTATTGGCAAAGATCATAACATGTAAACTACTTTTTGTTGATGTAGCTAGCTGCATTATGATTTTCACTCCGGAGGAACTTTAACATCTCATCTGCTGTCTGCATGGACCACTTTAATTTATAAGCTAACATTGGTGTAAATAAAATCCAGTGTTGCTCATCCAACACCTCATAACCACCCCGTTACCTCATGTTTCACTAGTCTATAGACTAGAAATATCTGTTCTCCTGGGCTTGTATTCAGAAATGTTCTCTGAGTAGGTGTgcttatctaggatcagttttgccttttttAGATCAACGTGAATAACATTTACATGGTAAGGCGGAACTGATCCTGGATCGACAGCAACCCTATTCCGAGACGCTTAATGAATATGTGCCCAAGTTTATGTCATGTGCAATATTTTAAAGCCAGCTCCTTTTGTAATGCGTATGTTTCGCCACTGTTACTAGCTGGCTTTGTCATTGTGATATGTTGATGTATGACCCATATAGCACTTTAGTTATTGTAATCCAATGGATAAAATGTGTGTTACCTTGACTGAAAATAGGGTATAGTCCTTTGAAAATGGAGGGGGGAAAAGGCTTCAGGAAATTAAAGATGAGAACAAACGA
>XM_036959470.1
AAGCAAAGCTGTATTGTCACAGCTATGTGTCCTCGCATAAACTTCATTATTAGTGTTATTGAATTATTGGTTGTTTAGATTCACTGGGCAATCAGGCTTGCTAGCGATAAATGCTTAACTAGCCATCTAGCTAAAAATTTCTAACCACCAATATATAAACTAGCTAAATAACAAGCTAATTTAATTTAACATCTTCAGCAATGTCGTTTGTTGTGCCAGCTTCATTGGGATTAATATTGGTAACGTCGTGTACGTTCAGACGCCACCAGCACCATGGCAACTGCACAGTCAGCGTTAACATTTGCAGTGTGTATCCTGATGATAACAGAGTTGATACTTGCCAAGAAGGACTACTATGACATACTGGGTGTGCGGAAAGATGCCAACGAGCGTCAGATAAAGAAGGCTTTTCACAAGCTGGCAATGAAGTATCATCCAGACAAGAACAAGAGCCCAGATGCTGAGACAAAGTTCAGAGGAATTGCTGAGGCATATGAAACATTATCAGATGAGAAGAGGAGACAAGAGTATGACCAGTTTGGTCACGGCACATTCTATAATGACATAACCAAAGACCGAAACGGTCCAAACGTCCACCAGCCCTTCAACTTCAACGACATGTTCAAGGACTTTGATATTTACAACCAGAACCGGCACTCCCATCACCAAAGGCACTTCGAGGATCACTTCCGGGCCCACCAGGAGGCCCACCACAGCAGACGCAAGAGACACTTCCAGGGTGTCTTTGGAGCAGCAGGTGGTGGTGGCGGCTTTGATGACATGTTTGACGACATGGAGAAGATGTTTACTTTTGACACGGACACTACTAAGCGGACGGAGAGCACATTTCAGGGTACTACAACGAAGCAACACTGCAGAACAGTGACACAGCGCAGGGGGAACATGGTCACCACGTACACTGACTGCACTGGCTCCTGAGGACAGAGGTCTTTTGTCGGTATCCACATCCTCTGGGTCGTGTTCATCAGGCACGAAATGGAAGAAAGCAGCCTGAAATGGGGAGGTActatctgaacttgtccaataagcaAGGCTTGTTTTCCATTGCATaacattttgaaatgtttctCTACGTTGTgctctaatgaacatgacccttgGCACAGCTTGCACATAGGCCCCTGTGGCGGGAGCAAGCTGTTTTTGTTGCTGCTGTGACCTAAGTGCTGGTCATTGCTATTTTGTTGAGTCACAGTAGCTAATGAAAACACTTTTTAGCACACTCAGTTTGTAATTTTTAACAATTTAATTACAGCACTGAAAAGCTTTTGAAGCATATTTCTCACACTATGGTTAGGAATGTAAATGTTGTAGAGAAATATTTTTTGGGTTGTGTTAAGTCTAATCTGGATCCAGATTTTTATTAGCTACTTAGAATTATATATATcattctatatactgtatatttcgaAACCCCCCCCTTAATATTTACATAGGATTTTTAAGGAGACGCTTTTCAGCTATTCATTATATAGTCCCTTGCAAACCTAAATATGCAATTGAACATAGTATCAGTATTGTTGCCTTAAGCAACTTCAATTGTTCAAGAGCAATTAATTTTTTTTCATGGGAGAATGTTTTCACTTGAGCTTTGTTATTGTAATTCGTCAGCCAAATAGTTTCAGTAACTACTACCACTGCTGAACCTAGACATTTTCTCTGTGCATGTAGTATTTTGTATAGCGTACAGCTCCATTGTGTGAATCCAGCAGCCTTTTGGTTGGAACAAAACAGTGTGGATAATGAACCGTGACAGGTTTGCTTTTGTTTGATAAATGGAGAACAACGTCTGCAAAAATGTTCCATCAGAACATGTACTGAAACTGTATGGCAGCATTTTGATGCTGCCTGAAGTtaccttttttttgtgtgttaagGGATGCTCGCCACTTTAAGTTGAAATTAGGAAAGAAATATTCAGATCGACAAGAACTTGTATTGGCAAAGATCATAACATGTAAACTACTTTTTGTTGATGTAGCTAGCTGCATTATGATTTTCACTCCGGAGGAACTTTAACATCTCATCTGCTGTCTGCATGGACCACTTTAATTTATAAGCTAACATTGGTGTAAATAAAATCCAGTGTTGCTCATCCAACACCTCATAACCACCCCGTTACCTCATGTTTCACTAGTCTATAGACTAGAAATATCTGTTCTCCTGGGCTTGTATTCAGAAATGTTCTCTGAGTAGGTGTgcttatctaggatcagttttgccttttttAGATCAACGTGAATAACATTTACATGGTAAGGCGGAACTGATCCTGGATCGACAGCAACCCTATTCCGAGACGCTTAATGAATATGTGCCCAAGTTTATGTCATGTGCAATATTTTAAAGCCAGCTCCTTTTGTAATGCGTATGTTTCGCCACTGTTACTAGCTGGCTTTGTCATTGTGATATGTTGATGTATGACCCATATAGCACTTTAGTTATTGTAATCCAATGGATAAAATGTGTGTTACCTTGACTGAAAATAGGGTATAGTCCTTTGAAAATGGAGGGGGGAAAAGGCTTCAGGAAATTAAAGATGAGAACAAACGA

Function

NR:

description
dnaJ homolog subfamily B member 9-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577124.2 False 2403 mRNA 0.41 3 94145663 94149467
XM_036959470.1 True 2574 mRNA 0.40 3 94145753 94149467

Neighbor

gene id symbol gene type direction distance location
LOC118936881 NA coding upstream 423901 93716089 ~ 93721762 (+)
LOC118936880 NA coding upstream 521578 93623033 ~ 93624085 (+)
LOC110502396 LOC105018284 coding upstream 768758 93373307 ~ 93376905 (+)
LOC110499974 LOC106561627 coding upstream 810145 93270955 ~ 93335518 (+)
ric8a ric8a coding upstream 1060778 93068836 ~ 93084885 (+)
dnm1l LOC106561645 coding downstream 964 94150431 ~ 94172796 (+)
LOC110500081 NA coding downstream 114542 94264009 ~ 94268751 (+)
zgc:136858 LOC106561644 coding downstream 121093 94270560 ~ 94300044 (+)
LOC110500101 LOC106561643 coding downstream 150702 94300169 ~ 94317655 (+)
LOC110500139 LOC106561672 coding downstream 241897 94391364 ~ 94437682 (+)
G206419 NA non-coding upstream 731 94144459 ~ 94144932 (+)
G206418 NA non-coding upstream 1842 94143584 ~ 94143821 (+)
G206388 NA non-coding upstream 45252 94098245 ~ 94100411 (+)
G206377 NA non-coding upstream 61464 94083754 ~ 94084199 (+)
G206325 NA non-coding upstream 155544 93989443 ~ 93990119 (+)
G206421 NA non-coding downstream 7957 94157424 ~ 94158198 (+)
G206426 LOC106561647 non-coding downstream 24593 94174060 ~ 94177373 (+)
G206447 NA non-coding downstream 81637 94231104 ~ 94231961 (+)
G206474 NA non-coding downstream 123656 94273123 ~ 94273412 (+)
G206475 NA non-coding downstream 128067 94277534 ~ 94277752 (+)
G206389 LOC106561642 other upstream 43791 94100979 ~ 94101872 (+)
G206285 NA other upstream 204192 93940486 ~ 93941471 (+)
G205688 NA other upstream 333494 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 346727 93796082 ~ 93798936 (+)
G205482 NA other upstream 743429 93401617 ~ 93402234 (+)
G206850 NA other downstream 407702 94557169 ~ 94562224 (+)
G206908 NA other downstream 482362 94631829 ~ 94632267 (+)
G206926 NA other downstream 556479 94705946 ~ 94706248 (+)
G208404 NA other downstream 2078326 96227793 ~ 96228463 (+)

Expression


Co-expression Network