zgc:136858 (LOC106561644)


Basic Information

Item Value
gene id zgc:136858
gene name LOC106561644
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94270560 ~ 94300044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959567.1
ATCCCCAAGTCCACGCAGTGCACCACATCATCATCTTGAAGACATCTTGGGTTCAACTAATGTCTGTATGGGGTCAACAGGGACATACCAAAGAGAGGTCAATGAGAGGGTGTCAGTGTCACATACTGCAACTCATCTAACGTTACAGGCCCCACCACAAGCATATGTGGACCCTGTTGCACGGTGTCTTCCTATGACCTTTTGAGAGTGAAGACCGCGCACGTGTAAGAGTCGAGGGGGAAGCTCATAATGCTCTCAGTGGTGGAGTGAGGGGAACATGGAATGTGTCCAGAACAGAACGAAGTAACTACTCTCAAACCCACCTGCAACTCAATACAGTTTCAAGGCATTTAACATTTTGGCCGTTTAtccaatgctcttaaccagaGCGACCcatagtcagtgcattcaactaagTGACTTGGTTGGCTACTCACTGCTGCTTTTGATGCCCGGGAATCCAAGGCTGAGAAATCTGTTTTGTTTTCCATCATGAAATTAAGATATTCTGAGTTGAGGTTGCTGAAGGAAGTATCTGCACAACTCCTAAAACGTGACATCACAACATTTCACAGGAGATTATGCAAAAATGatggtCTCTTCCTTGTCCACCCGGCAGTATCCCAGGCATTGGCAGAAAACAGAGCAGTGGTGGCACTAGAGAGCACCATCATCACCCATGGCATGCCATACCCACACAACCTGAGCACAGCCAAAGCGGTAGAAGCCATAGTAAGGACAGAGGGAGCCATTCCTGCCACTGTTGGGCTGCTCCAGGGCAGGGTTCATGTGGGGTTGTCTTCAGAAGAACTGGACTACCTAGCACGGAGTAAGACGTCGCTGAAAGTGTCCCGCCGAGACCTGCCCTACGCCATCAGCAAGGGTCTCTGTGGTGGCACTACGGTTTCAGGCACCATGATAGCAGCACACAGAGCCGGTATCCATGTCTTTGTCACTGGGGGTGTTGGAGGAGTGCACCGAGATGGAGAGAATAGTATGGATATCAGTGCAGATCTGACAGAGCTAGGCAGGACTCCCATTGCTGTGGTTTCAGCTGGAGTGAAGTCCATTCTCGACATTGGCCGCACCCTGGAGTACTTGGAgacacagggtgtgtgtgtcgCCACATTTGGGACCTCCATGAATTTCCCCGCTTTCTTCTCTCCACAAAGTGGGTTTACCTCCCCTTACCATGTCAACAATGCTGAGGAGGCTGCTGATCTCATTGCGGGTAACCTGTCCCTGGGTCTACAGAGTGGCCTGCTGCTGGCTGTGCCCATCCCTAAGGAGCATGCAGCAGCTGGAGAACAGATTGAGAACGCTATACAGGCTGCACTGGCAGAGGCTAATGTTAAAGGTATCAGAGGAAGGGATTTGACGCCCTTCGTTCTTAAAAAGGTCAACGAACTGACCCGAGGAAAGTCCCTCCAGGCTAATATCGCTCTCATTCATAATAATGCCAGGGTAGGCAGTCAGATAGCCTGTGCACTGTCTAAACGAATGCAGAAGAAGACTTGGACACCTGCTCCTCacggaaaggagagagagaaagattcgGACTCTCAGCCAAACATTGTTGTCATAGGTGGTGTGAATGTGGATTTTATTGCCAAGGGGAAAACAAATAAGCTGGTGTTTGGACAGACGAATCCTGGAAGTGTCTGCCAGTCATTTGGTGGAGTAGGAAAGAACCTTGCTGACTCTCTGAGCAGAATGGGCCAAAGACCTCTCTTCATCTCAGCTATTGGAACTGACTCTCACAGTGATGCTGTGCTGAACTACTGTCGGCACATGAACACCAGTGGTATTGCTGTGCTTAAGGAGCAGCGGACTGCCACGTATTGTGCCGTAATCACTGAGAGCGGTGATCTGAGTCTGGGATTAGGCGACATGGACATTCACCAGCAAATCACAGAGCAGTATGTGTCCCAGTTTGAGGAGAAGCTCTCAGCAGCCTCTCTCATCTGTCTGGACGGCAATATACCCGTCTCCACCATCAACTATGTTTGCTCTGTTGCCAAGAAGCATGCAGTGCCAGTGTGGTATGAGCCAACTGATTGTGACAAGGCCTGCAAGCCTTTCCTGTCAGACAGCTGGAAAGCCCTGGCCTACACCTCCCCCAACCTGACTGAGCTGTGTACCATGAACAAGGCATTGGGCCTCCTGACACCTGCAGCGCTGCCTAGCTCTGTGGAGGAAGTGCTGAGCTGTGCCATGGCTCTCGCACGCCCCCTGCTGGACCACCTGCAGTGTGTGGTGGTGACCCTGGGGGCCATGGGAGTGCTGCTGTGTGGAGAACATAACGCTGGGTCTGTAGACCTGCAGCCTAGGAGAGGAACAAGGAAGGGTCGGCTATGTGCCGTCCACTACTTTGCTCTGGCTCAGACCGCAGCCGAAATGGTGAATGTCTCAGGAGCCGGAGATAGtCTTGCAGGTGGGATATTGGCTGGTATGTTCCAGAGCAGAGACACTCACAGCTGTGTTAGGATGGGGCTCCTGGCAGCACGCCTGTCACTGGCCTCCCCACATCCCGTCTGCACCACTCTGACCACAGACTCTGTGGACCCAAACAAGTTCCAACCACCCCAATCGTGGCCTCAACCCAACCTCCTGTGGATGGAGGAATGAAGAAAGATCCATTACTATTATGTTATTATCTTGTTCAACCATCAACATAACTTTTCAATGTTTAgttcaggggtgtcaaactcattttatCCAATGTGCTGCATTTGGTCTTCATCGAGGTCCAGAGAGCTGCACTGAAAATTGGTTATATTTCATTGCAAAATGTGCTAAATATTGTCCATCGTTTTGGGAATTTAttatgctccctgactgtctagcattCCATTATGTGATTGTTTGCACCCCTGATGCTGTTCATTTGTATACATTTTGTCATAATTTTCAATAAAATACTTTAATGCTTCGATTTA
>XM_036959569.1
ATAGATACAGGTCAGAGTTCTCATGGTAAAGGCAAGCAAACTGTGTCAACAAAAGGCATGGCAGGGTCAAAGTTCACTCACTTTTCTGGCGAAAAAGTCTCTCATTCCTGAGTTTCTCACACACTGGAGAAGTGACTTGGTTGGCTACTCACTGCTGCTTTTGATGCCCGGGAATCCAAGGCTGAGAAATCTGTTTTGTTTTCCATCATGAAATTAAGATATTCTGAGTTGAGGTTGCTGAAGGAAGTATCTGCACAACTCCTAAAACGTGACATCACAACATTTCACAGGAGATTATGCAAAAATGatggtCTCTTCCTTGTCCACCCGGCAGTATCCCAGGCATTGGCAGAAAACAGAGCAGTGGTGGCACTAGAGAGCACCATCATCACCCATGGCATGCCATACCCACACAACCTGAGCACAGCCAAAGCGGTAGAAGCCATAGTAAGGACAGAGGGAGCCATTCCTGCCACTGTTGGGCTGCTCCAGGGCAGGGTTCATGTGGGGTTGTCTTCAGAAGAACTGGACTACCTAGCACGGAGTAAGACGTCGCTGAAAGTGTCCCGCCGAGACCTGCCCTACGCCATCAGCAAGGGTCTCTGTGGTGGCACTACGGTTTCAGGCACCATGATAGCAGCACACAGAGCCGGTATCCATGTCTTTGTCACTGGGGGTGTTGGAGGAGTGCACCGAGATGGAGAGAATAGTATGGATATCAGTGCAGATCTGACAGAGCTAGGCAGGACTCCCATTGCTGTGGTTTCAGCTGGAGTGAAGTCCATTCTCGACATTGGCCGCACCCTGGAGTACTTGGAgacacagggtgtgtgtgtcgCCACATTTGGGACCTCCATGAATTTCCCCGCTTTCTTCTCTCCACAAAGTGGGTTTACCTCCCCTTACCATGTCAACAATGCTGAGGAGGCTGCTGATCTCATTGCGGGTAACCTGTCCCTGGGTCTACAGAGTGGCCTGCTGCTGGCTGTGCCCATCCCTAAGGAGCATGCAGCAGCTGGAGAACAGATTGAGAACGCTATACAGGCTGCACTGGCAGAGGCTAATGTTAAAGGTATCAGAGGAAGGGATTTGACGCCCTTCGTTCTTAAAAAGGTCAACGAACTGACCCGAGGAAAGTCCCTCCAGGCTAATATCGCTCTCATTCATAATAATGCCAGGGTAGGCAGTCAGATAGCCTGTGCACTGTCTAAACGAATGCAGAAGAAGACTTGGACACCTGCTCCTCacggaaaggagagagagaaagattcgGACTCTCAGCCAAACATTGTTGTCATAGGTGGTGTGAATGTGGATTTTATTGCCAAGGGGAAAACAAATAAGCTGGTGTTTGGACAGACGAATCCTGGAAGTGTCTGCCAGTCATTTGGTGGAGTAGGAAAGAACCTTGCTGACTCTCTGAGCAGAATGGGCCAAAGACCTCTCTTCATCTCAGCTATTGGAACTGACTCTCACAGTGATGCTGTGCTGAACTACTGTCGGCACATGAACACCAGTGGTATTGCTGTGCTTAAGGAGCAGCGGACTGCCACGTATTGTGCCGTAATCACTGAGAGCGGTGATCTGAGTCTGGGATTAGGCGACATGGACATTCACCAGCAAATCACAGAGCAGTATGTGTCCCAGTTTGAGGAGAAGCTCTCAGCAGCCTCTCTCATCTGTCTGGACGGCAATATACCCGTCTCCACCATCAACTATGTTTGCTCTGTTGCCAAGAAGCATGCAGTGCCAGTGTGGTATGAGCCAACTGATTGTGACAAGGCCTGCAAGCCTTTCCTGTCAGACAGCTGGAAAGCCCTGGCCTACACCTCCCCCAACCTGACTGAGCTGTGTACCATGAACAAGGCATTGGGCCTCCTGACACCTGCAGCGCTGCCTAGCTCTGTGGAGGAAGTGCTGAGCTGTGCCATGGCTCTCGCACGCCCCCTGCTGGACCACCTGCAGTGTGTGGTGGTGACCCTGGGGGCCATGGGAGTGCTGCTGTGTGGAGAACATAACGCTGGGTCTGTAGACCTGCAGCCTAGGAGAGGAACAAGGGGTCGGCTATGTGCCGTCCACTACTTTGCTCTGGCTCAGACCGCAGCCGAAATGGTGAATGTCTCAGGAGCCGGAGATAGtCTTGCAGGTGGGATATTGGCTGGTATGTTCCAGAGCAGAGACACTCACAGCTGTGTTAGGATGGGGCTCCTGGCAGCACGCCTGTCACTGGCCTCCCCACATCCCGTCTGCACCACTCTGACCACAGACTCTGTGGACCCAAACAAGTTCCAACCACCCCAATCGTGGCCTCAACCCAACCTCCTGTGGATGGAGGAATGAAGAAAGATCCATTACTATTATGTTATTATCTTGTTCAACCATCAACATAACTTTTCAATGTTTAgttcaggggtgtcaaactcattttatCCAATGTGCTGCATTTGGTCTTCATCGAGGTCCAGAGAGCTGCACTGAAAATTGGTTATATTTCATTGCAAAATGTGCTAAATATTGTCCATCGTTTTGGGAATTTAttatgctccctgactgtctagcattCCATTATGTGATTGTTTGCACCCCTGATGCTGTTCATTTGTATACATTTTGTCATAATTTTCAATAAAATACTTTAATGCTTCGATTTA
>XM_021577251.2
TAGATACAGGTCAGAGTTCTCATGGTAAAGGCAAGCAAACTGTGTCAACAAAAGGCATGGCAGGGTCAAAGTTCACTCACTTTTCTGGCGAAAAAGTCTCTCATTCCTGAGTTTCTCACACACTGGAGAAGTGACTTGGTTGGCTACTCACTGCTGCTTTTGATGCCCGGGAATCCAAGGCTGAGAAATCTGTTTTGTTTTCCATCATGAAATTAAGATATTCTGAGTTGAGGTTGCTGAAGGAAGTATCTGCACAACTCCTAAAACGTGACATCACAACATTTCACAGGAGATTATGCAAAAATGatggtCTCTTCCTTGTCCACCCGGCAGTATCCCAGGCATTGGCAGAAAACAGAGCAGTGGTGGCACTAGAGAGCACCATCATCACCCATGGCATGCCATACCCACACAACCTGAGCACAGCCAAAGCGGTAGAAGCCATAGTAAGGACAGAGGGAGCCATTCCTGCCACTGTTGGGCTGCTCCAGGGCAGGGTTCATGTGGGGTTGTCTTCAGAAGAACTGGACTACCTAGCACGGAGTAAGACGTCGCTGAAAGTGTCCCGCCGAGACCTGCCCTACGCCATCAGCAAGGGTCTCTGTGGTGGCACTACGGTTTCAGGCACCATGATAGCAGCACACAGAGCCGGTATCCATGTCTTTGTCACTGGGGGTGTTGGAGGAGTGCACCGAGATGGAGAGAATAGTATGGATATCAGTGCAGATCTGACAGAGCTAGGCAGGACTCCCATTGCTGTGGTTTCAGCTGGAGTGAAGTCCATTCTCGACATTGGCCGCACCCTGGAGTACTTGGAgacacagggtgtgtgtgtcgCCACATTTGGGACCTCCATGAATTTCCCCGCTTTCTTCTCTCCACAAAGTGGGTTTACCTCCCCTTACCATGTCAACAATGCTGAGGAGGCTGCTGATCTCATTGCGGGTAACCTGTCCCTGGGTCTACAGAGTGGCCTGCTGCTGGCTGTGCCCATCCCTAAGGAGCATGCAGCAGCTGGAGAACAGATTGAGAACGCTATACAGGCTGCACTGGCAGAGGCTAATGTTAAAGGTATCAGAGGAAGGGATTTGACGCCCTTCGTTCTTAAAAAGGTCAACGAACTGACCCGAGGAAAGTCCCTCCAGGCTAATATCGCTCTCATTCATAATAATGCCAGGGTAGGCAGTCAGATAGCCTGTGCACTGTCTAAACGAATGCAGAAGAAGACTTGGACACCTGCTCCTCacggaaaggagagagagaaagattcgGACTCTCAGCCAAACATTGTTGTCATAGGTGGTGTGAATGTGGATTTTATTGCCAAGGGGAAAACAAATAAGCTGGTGTTTGGACAGACGAATCCTGGAAGTGTCTGCCAGTCATTTGGTGGAGTAGGAAAGAACCTTGCTGACTCTCTGAGCAGAATGGGCCAAAGACCTCTCTTCATCTCAGCTATTGGAACTGACTCTCACAGTGATGCTGTGCTGAACTACTGTCGGCACATGAACACCAGTGGTATTGCTGTGCTTAAGGAGCAGCGGACTGCCACGTATTGTGCCGTAATCACTGAGAGCGGTGATCTGAGTCTGGGATTAGGCGACATGGACATTCACCAGCAAATCACAGAGCAGTATGTGTCCCAGTTTGAGGAGAAGCTCTCAGCAGCCTCTCTCATCTGTCTGGACGGCAATATACCCGTCTCCACCATCAACTATGTTTGCTCTGTTGCCAAGAAGCATGCAGTGCCAGTGTGGTATGAGCCAACTGATTGTGACAAGGCCTGCAAGCCTTTCCTGTCAGACAGCTGGAAAGCCCTGGCCTACACCTCCCCCAACCTGACTGAGCTGTGTACCATGAACAAGGCATTGGGCCTCCTGACACCTGCAGCGCTGCCTAGCTCTGTGGAGGAAGTGCTGAGCTGTGCCATGGCTCTCGCACGCCCCCTGCTGGACCACCTGCAGTGTGTGGTGGTGACCCTGGGGGCCATGGGAGTGCTGCTGTGTGGAGAACATAACGCTGGGTCTGTAGACCTGCAGCCTAGGAGAGGAACAAGGAAGGGTCGGCTATGTGCCGTCCACTACTTTGCTCTGGCTCAGACCGCAGCCGAAATGGTGAATGTCTCAGGAGCCGGAGATAGtCTTGCAGGTGGGATATTGGCTGGTATGTTCCAGAGCAGAGACACTCACAGCTGTGTTAGGATGGGGCTCCTGGCAGCACGCCTGTCACTGGCCTCCCCACATCCCGTCTGCACCACTCTGACCACAGACTCTGTGGACCCAAACAAGTTCCAACCACCCCAATCGTGGCCTCAACCCAACCTCCTGTGGATGGAGGAATGAAGAAAGATCCATTACTATTATGTTATTATCTTGTTCAACCATCAACATAACTTTTCAATGTTTAgttcaggggtgtcaaactcattttatCCAATGTGCTGCATTTGGTCTTCATCGAGGTCCAGAGAGCTGCACTGAAAATTGGTTATATTTCATTGCAAAATGTGCTAAATATTGTCCATCGTTTTGGGAATTTAttatgctccctgactgtctagcattCCATTATGTGATTGTTTGCACCCCTGATGCTGTTCATTTGTATACATTTTGTCATAATTTTCAATAAAATACTTTAATGCTTCGATTTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K16330 K16330; pseudouridylate synthase / pseudouridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959567.1 False 2939 mRNA 0.50 20 94270560 94300044
XM_036959569.1 False 2651 mRNA 0.50 20 94278140 94300044
XM_021577251.2 True 2653 mRNA 0.50 20 94278141 94300044

Neighbor

gene id symbol gene type direction distance location
LOC110500081 NA coding upstream 1809 94264009 ~ 94268751 (+)
dnm1l LOC106561645 coding upstream 97764 94150431 ~ 94172796 (+)
LOC110500011 LOC106561648 coding upstream 121093 94145663 ~ 94149467 (+)
LOC118936881 NA coding upstream 548798 93716089 ~ 93721762 (+)
LOC118936880 NA coding upstream 646475 93623033 ~ 93624085 (+)
LOC110500101 LOC106561643 coding downstream 125 94300169 ~ 94317655 (+)
LOC110500139 LOC106561672 coding downstream 91320 94391364 ~ 94437682 (+)
LOC110500169 lap2b coding downstream 198908 94498952 ~ 94504181 (+)
LOC110500174 LOC106561671 coding downstream 205338 94505382 ~ 94513747 (+)
LOC118944177 NA coding downstream 210329 94510373 ~ 94510614 (+)
G206447 NA non-coding upstream 38599 94231104 ~ 94231961 (+)
G206426 LOC106561647 non-coding upstream 93187 94174060 ~ 94177373 (+)
G206421 NA non-coding upstream 112362 94157424 ~ 94158198 (+)
G206419 NA non-coding upstream 125628 94144459 ~ 94144932 (+)
G206418 NA non-coding upstream 126739 94143584 ~ 94143821 (+)
G206471 NA non-coding downstream 10703 94310747 ~ 94311155 (+)
G206479 NA non-coding downstream 14589 94314633 ~ 94314872 (+)
G206480 NA non-coding downstream 19128 94319172 ~ 94319399 (+)
G206482 NA non-coding downstream 27884 94327928 ~ 94328143 (+)
G206485 NA non-coding downstream 39763 94339807 ~ 94340105 (+)
G206389 LOC106561642 other upstream 168688 94100979 ~ 94101872 (+)
G206285 NA other upstream 329089 93940486 ~ 93941471 (+)
G205688 NA other upstream 458391 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 471624 93796082 ~ 93798936 (+)
G205482 NA other upstream 868326 93401617 ~ 93402234 (+)
G206850 NA other downstream 257125 94557169 ~ 94562224 (+)
G206908 NA other downstream 331785 94631829 ~ 94632267 (+)
G206926 NA other downstream 405902 94705946 ~ 94706248 (+)
G208404 NA other downstream 1927749 96227793 ~ 96228463 (+)

Expression


Co-expression Network