LOC110500139 (LOC106561672)


Basic Information

Item Value
gene id LOC110500139
gene name LOC106561672
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94391364 ~ 94437682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959580.1
GGATCTCGCGCCACGTTAGTTGTCACGGTGACCGTGTACGGTGCATTTTCCGCTCTGCTGTCTTCACCGGAAACAACACGCTGCGGATGATGCTTTTCTACTATGCGAAAACTATATTCATGATACCAACAGTTCCATGGCCAACAATACGAAGACACAGACGTAGAAACCGTTCTATAAGGACATGCATCTACGATGTATCCTCTCTACAACAGGCAATATGAGGGATTTACAGGGGATGACAATGAGATGAGGGACAACATTCATAGAAGAACATGTCACAGTTCTTTCAGCTACTCATCTTTTGATGATGAAGAGGAGTTGGAGGATGAAGAACAGGTGAAGGCACCTGCGGAGGAGGAGTGTTCCCACAAGAGTGAAGATGTGTCACGTGTTTCTCCACTACCCAGAACCACCCAGGTGGTATTTGAGATCCAGTCGGGAAGGGCTGTGCCTCGCCTCAGGGAGCCCCGACACCTGTACGGTGTGTCTGGACATGTGTCCCAAACACTGCCCCGCTGGCCCCACGAGTGGGAGGTCATCCCGGGGGAAATTCAGCATATTGAGTGGGCTCCTCCCTTCCCAGAGCCGCTGTGTGCTCAGAAGAACACCAGCGAGTGGCTGAGACCAGAGTCTGAAGTGGAAGGCACCGTTGTGTATGACACACAGAGAAATAAAGATAACTACTTCCTGGGTTCTCGTGTGGGGGGCCGTCGCTCCTCCCTGACCGctgctgctgtgtctctctctggccctgaTGACATCACTCTGCTGTTCGAAGGACGCTTCGAGAGTGGCAACCTGCTGAAAGCAACCAGGGTTGGTGAATTTGATTATGAGCTCTCCCTGCGGACGGACCTGTACACAGAGAAGCACACTCAGTGGTTCTACTTCCGGGTGAGGAACACGAGGGCGGGGGTTCGTTACCGCTTCACCATCACCAACCTGCTGAAGGTGACCAGTCTGTATGAAGAGGGGCAGCTGCCTCTGTTCTACTCTGAGGAGGAGGCCCGGATCCAGGGGGTGGGCTGGCACCGCGTGGGCCAACAGGTCTCCTACCAACGTAACGGACGGCACCACGCCGACCAGCCCTGCTACTCCCTCTCCTGGACCTTTTGCTTCCCTTATGACCAGGACACCTGTTACCTGGCCCACTGCTTCCCTTACACCTACTCCAACCTGTGGGCCCACCTGTCCGAGATCGAGCGGGACCCCCACCGCTCGCGGTTCTGTAAGGTACGGACTCTGTGCCGGTCGCTGGCGGGTAACCTGGTTCCGGTGCTGACGGTGACCAACCCATCCCATCGTGAGGACAGGATTCACAAGCCTGCTGTGGTGCTGACCGCCCGGATACACCCCGGGGAGACCAACAGCTCCTGGGTGATGAGGGGTATCCTGAACTTCCTGCTGGGGGACTCTCCGGATGCGGCGCTACTCCGAGATGCCTTCGTCTTCAAGCTGGTGCCCATGCTGAACCCGGACGGGGTTATAGTAGGAAACTACCGCTGCTCGCTGACCGGACGTGACCTCAACCGCAACTACAAGTCCATCCTCAGAGACTCCTTCCCTACCGTGTGGGCCACACACACCATGGTCCAGAGACTGTGTGACGAGCGTAAGGTGCTGCTGTACTGTGATCTCCATGGACACAGCCGTAAACACAACGTCTTCACCTACGGCTGTGAGAACCCCAGGCCCGCTGACAGACACCCTCACGAACGAGTCTTCCCTCTGATGCTCAGCAAGAATTGCCCTGACATGTTCTCGTTCGGGAGCTGTAAGTTCAAGGTACAGCGCAGTAAGGAGGGAACAGGCAGAGTGTCTCTGTGGAGGCTGGGGGTCCTCAACTCCTTCACCCTGGAGACATCGTTCTGTGGCTCTAACATCGGTAAGAGGAAGGGGACCCATTTCAGCACTCAGGACCTAGAGATGTTGGGGGCTCAGTTCTGTGACACACTACTAGACTACTGTGACCCGGACCGGACAAAGTACAGCGCGTGTTTGAGAGAGCTACAGGAGATCATGAGACAGGAGGCAGGTTTGCCAATAGACATCAAGCCTACAGATACCTCACTGACCGACCACGAGGCCAGCACGAGTGGATCCAACAGCTCCCAGACGGATGGGCCTCCTACTCACCTCCAGGCCTTCGACAAgATGACGTCCCGTAAGAAGCTGAAGTCCAAGAAGGAGAGGAACAGATCTCCCCTggtcagagccagggagagagaggaaaatgggGATAATGGTGTCAAAAAGACGTTGAAGAAAAGCAAATATGTATTGAAGCCTTTAAAGGCTCCTCCAGCAGTGCCCAGGAGGGAACCTCcaaaatggagggagagacaactgGTCCCCCCTGAGCCCAGTCCTCCAGATAAGAAGGCAGTCTATCGTTCCTTCTGAATGGAGAGAAAGACTGTTACACTGGTTATATTTTTCATCATTCTCTTACCCCCCTCAAGTGGTGTAGGAGAATACTGCGTTCCCACGTTCACACTCACGACATGATATTCATTTGAACCACTGAATGTCTGTTTTCTCCTGTTGTGCATGTAAATAAGCATTCCTCTTAAGCATGTGTTTATTTCTGCATCCCTCAGTTATTCCTTTATCATGATGATACATGTTCAGAGCATGTATCACCATCCTCCCTGCGTGTTTCCTCCAGGTATCTGTCCTATACCTTGTCTTTGACACAAAGAAGCCGGCCATGACATCGAAGTCGGAGTACCTGCAGCACCTGATGGCTGATTATGTGAGGAGCAGGATGCAGTTGACCCTCAATGGCTACGACTGGGGTCCTTGCCAGTGCCCCCAGGCCACCCACCTGCCCCACTCACAGCTTCCCCGGGACAACAGAGACGGGGAGCGACTGCCCGGCCTGGCAAATCTGCCTGTAGGAGACAAGTCCATCAGAAGGCTCTCCCCAGTCCAGTGGAGAGGACCCACATCCTACACCGCCCCATCCAGCCTGCAACTCCCATCCAACAGATTCCCTCCACTGCCTCCGGTTCCTGTAAGGGAGTTTGTCTCTGAGCCTGAGGAACTACCCAGCATGTCAGCAGGGATGGAATGGCTGTTTCTGCGACCACTATGCCCCATATTCACCCACCTGGGGACCGACTCAGACTCAGGAGCCTGTTTCCAAAGCACGTGTCATTCTGATCCGGCGAGAATGAAACCCAACAAGAAGAAGCGGAAAGTAACTGAAGAAAT
>TU233702
GGCTACGACTGGGGTCCTTGCCAGTGCCCCCAGGCCACCCACCTGCCCCACTCACAGCTTCCCCGGGACAACAGAGACGGGGAGCGACTGCCCGGCCTGGCAAATCTGCCTGTAGGAGACAAGTCCATCAGAAGGCTCTCCCCAGTCCAGTGGAGAGGACCCACATCCTACACCGCCCCATCCAGCCTGCAACTCCCATCCAACAGATTCCCTCCACTGCCTCCGGTTCCTGTAAGGGAGTTTGTCTCTGAGCCTGAGGAACTACCCAGCATGTCAGCAGGGATGGAATGGCTGTTTCTGCGACCACTATGCCCCATATTCACCCACCTGGGGACCGACTCAGACTCAGGAGCCTGTTTCCAAAGCACGTGTCATTCTGATCCGGCGAGAATGAAACCCAACAAGAAGAAGCGGAAAGTAACTGAAGAAATGAAAAGAAACAGATCGGTACATCATCAACACAACAAGACCACATCAGGAACCTCATCAATGAATAAGCTGGATGGCTTCCGAAATCAGGAGGGATTAAGCAGAACAtccggaatcctccaaccaggatttctggatcACCTGGGC

Function

NR:

description
PREDICTED: cytosolic carboxypeptidase 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959580.1 False 3219 mRNA 0.54 22 94391364 94404520
TU233702 True 576 TUCP 0.48 5 94402591 94437682

Neighbor

gene id symbol gene type direction distance location
LOC110500101 LOC106561643 coding upstream 73709 94300169 ~ 94317655 (+)
zgc:136858 LOC106561644 coding upstream 91320 94270560 ~ 94300044 (+)
LOC110500081 NA coding upstream 122613 94264009 ~ 94268751 (+)
dnm1l LOC106561645 coding upstream 218568 94150431 ~ 94172796 (+)
LOC110500011 LOC106561648 coding upstream 241897 94145663 ~ 94149467 (+)
LOC110500169 lap2b coding downstream 94432 94498952 ~ 94504181 (+)
LOC110500174 LOC106561671 coding downstream 100862 94505382 ~ 94513747 (+)
LOC118944177 NA coding downstream 105853 94510373 ~ 94510614 (+)
LOC118944176 NA coding downstream 108086 94512606 ~ 94512848 (+)
LOC110500186 LOC106561670 coding downstream 110041 94514561 ~ 94520141 (+)
G206505 NA non-coding upstream 5778 94385324 ~ 94385586 (+)
G206491 LOC106561674 non-coding upstream 32006 94354478 ~ 94359358 (+)
G206490 NA non-coding upstream 40838 94348552 ~ 94350526 (+)
G206485 NA non-coding upstream 51259 94339807 ~ 94340105 (+)
G206482 NA non-coding upstream 63221 94327928 ~ 94328143 (+)
G206552 NA non-coding downstream 56319 94460839 ~ 94468127 (+)
G206553 NA non-coding downstream 77239 94481759 ~ 94481969 (+)
G206554 NA non-coding downstream 77552 94482072 ~ 94482311 (+)
G206555 NA non-coding downstream 83611 94488131 ~ 94488332 (+)
G206556 NA non-coding downstream 84058 94488578 ~ 94490154 (+)
G206389 LOC106561642 other upstream 289492 94100979 ~ 94101872 (+)
G206285 NA other upstream 449893 93940486 ~ 93941471 (+)
G205688 NA other upstream 579195 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 592428 93796082 ~ 93798936 (+)
G205482 NA other upstream 989130 93401617 ~ 93402234 (+)
G206850 NA other downstream 152649 94557169 ~ 94562224 (+)
G206908 NA other downstream 227309 94631829 ~ 94632267 (+)
G206926 NA other downstream 301426 94705946 ~ 94706248 (+)
G208404 NA other downstream 1823273 96227793 ~ 96228463 (+)
G208836 NA other downstream 2207909 96612429 ~ 96613459 (+)

Expression


Co-expression Network