LOC110500174 (LOC106561671)


Basic Information

Item Value
gene id LOC110500174
gene name LOC106561671
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94505382 ~ 94513747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577387.2
ACCCAAAGACACCAAAAGTGCGGAACTGACGTATCCTCTAACCTCGGGTGACGTAGACCCTTGCACAGTTAGGACGGACACTTGCCAGACACGAAGGTCTCTACGATTCGCCGGTGGTGAAGGACGGCGGCGCCATTTTGCGACTGAACGCGTGGAACCATCCCTTAATAAGGAACAATGTACCCCAACGCGTTAATGACACAGGTGGCGCGATCGAACCCGTTCAGCGCTCCCGGTTTCACTCTCCAGAAAGTCGAGGAGCCATCACAAAGTCTTACTGCCGATCATGGACCAAGAACACGCACATTGGCTGCGGCTGCAGTGGCCGAGGGAGACAGTTGTGAGTTTGGCTCATCGCATTATTTCATCATGTGTGGCATCGGTGGAATCCTGAGCTGTGGtaccacacacactgcagtggtGCCCCTTGACCTGGTCAAGTGCAGGTTGCAGGTGGACCCAGACAAGTACAAGAGCATCTTCAAGGGTTTCTCCATCACCATTAAAGAGGATGGCATGAGAGGGCTGGCTAAGGGCTGGGCTCCCACCTTCATCGGTTACTCCATGCAGGGTCTCTGCAAGTTTGGCTTCTATGAGGTGTTCAAGATCACCTACAGCGACATGATCGGAGAGGAAAACACCTACCTGTGGAGGACCTCTCTCTACCTGGCTGCGTCTGCCAGTGCAGAGTTCTTCGCTGACATCGCCCTGGCCCCAATGGAGGCGTGTAAAGTGCGTATTCAGACCCAGCCCGGCTACGCTAACACCCTCAGACAGTGTGCCCCTAAGATGTTCGCCGAGGAGGGAGTCTGGGCTTTCTACAAGGGTGTAGTCCCACTGTGGATGAGGCAGATCCCCTACACCATGATGAAGTTTGCCTGCTTTGAGAGGACCGTAGAGCTGCTGTACAAACATGTGGTGCCTAAACCCCGCGCTGAGTGCTCCAAGGGTGAACAGCTGGTCGTCACCTTCGTGGCCGGATACATTGCTGGTGTGTTCTGTGCCATCGTCTCCCACCCTGCTGACTCCGTGGTGTCTGTGCTGAACAAGGAGAGTGGCAGCACCGCCATCGGAGTGCTCAAGAAGCTCGGGCCCAAGGGTGTGTGGAAGGGTCTGGTGGCCCGTATCATCATGATCGGTACCTTGACCGCCCTGCAGTGGTTCATCTACGACTCTGTCAAGGTCTACTTCTGCCTGCCCCGTCCCCCTCCCCCAGAGATGCCCGAGTCCCTCAAGAAGAAGCTGGGGATTACAGAGTAAAGAAACAAAATGGCGGCCTTATCAACAAATATCTATTCAAAATGGCGGCCTTATCAACAGCAATATAAGATGGCGGCCTTCAAACAACACATCCTTAAGTTAACATCCACACTGCACACCGCTATCTGCCTGGTATAGTCATAGCTGTCCTGTTCTGCCTGTAGACCACCTACCCTGGTCTGAGCTACTTCTGCATATTACATTCAGAGCGAAATATGCCATGTAGAACAGACATGCCGCTACGACGTGTAGAATAAAGAATCATGTTGACTCTTA
>XM_021577379.2
CCCAAAGACACCAAAAGTGCGGAACTGACGTATCCTCTAACCTCGGGTGACGTAGACCCTTGCACAGTTAGGACGGACACTTGCCAGACACGAAGGTCTCTACGATTCGCCGGTGGTGAAGGACGGCGGCGCCATTTTGCGACTGAACGCGTGGAACCATCCCTTAATAAGGAACAATGTACCCCAACGCGTTAATGACACAGGTGGCGCGATCGAACCCGTTCAGCGCTCCCGGTTTCACTCTCCAGAAAGTCGAGGAGCCATCACAAAGTCTTACTGCCGATCATGGACCAAGAACACGCACATTGGCTGCGGCTGCAGTGGCCGATTCTGACGTTAGCTGTGAGTTTGGCTCTAAGAAATACTATGCCTTGTGCGGCTTCGGCGGCATCCTCAGCTGTGGGATCACACACACGGCGGTCGTTCCCCTTGACCTGGTCAAGTGCCGCCTGCAGGTGGACCCAGACAAGTACAAGAGCATCTTCAAGGGTTTCTCCATCACCATTAAAGAGGATGGCATGAGAGGGCTGGCTAAGGGCTGGGCTCCCACCTTCATCGGTTACTCCATGCAGGGTCTCTGCAAGTTTGGCTTCTATGAGGTGTTCAAGATCACCTACAGCGACATGATCGGAGAGGAAAACACCTACCTGTGGAGGACCTCTCTCTACCTGGCTGCGTCTGCCAGTGCAGAGTTCTTCGCTGACATCGCCCTGGCCCCAATGGAGGCGTGTAAAGTGCGTATTCAGACCCAGCCCGGCTACGCTAACACCCTCAGACAGTGTGCCCCTAAGATGTTCGCCGAGGAGGGAGTCTGGGCTTTCTACAAGGGTGTAGTCCCACTGTGGATGAGGCAGATCCCCTACACCATGATGAAGTTTGCCTGCTTTGAGAGGACCGTAGAGCTGCTGTACAAACATGTGGTGCCTAAACCCCGCGCTGAGTGCTCCAAGGGTGAACAGCTGGTCGTCACCTTCGTGGCCGGATACATTGCTGGTGTGTTCTGTGCCATCGTCTCCCACCCTGCTGACTCCGTGGTGTCTGTGCTGAACAAGGAGAGTGGCAGCACCGCCATCGGAGTGCTCAAGAAGCTCGGGCCCAAGGGTGTGTGGAAGGGTCTGGTGGCCCGTATCATCATGATCGGTACCTTGACCGCCCTGCAGTGGTTCATCTACGACTCTGTCAAGGTCTACTTCTGCCTGCCCCGTCCCCCTCCCCCAGAGATGCCCGAGTCCCTCAAGAAGAAGCTGGGGATTACAGAGTAAAGAAACAAAATGGCGGCCTTATCAACAAATATCTATTCAAAATGGCGGCCTTATCAACAGCAATATAAGATGGCGGCCTTCAAACAACACATCCTTAAGTTAACATCCACACTGCACACCGCTATCTGCCTGGTATAGTCATAGCTGTCCTGTTCTGCCTGTAGACCACCTACCCTGGTCTGAGCTACTTCTGCATATTACATTCAGAGCGAAATATGCCATGTAGAACAGACATGCCGCTACGACGTGTAGAATAAAGAATCATGTTGACTCTTA
>XM_036959614.1
ATGTACCCCAACGCGTTAATGACACAGGTGGCGCGATCGAACCCGTTCAGCGCTCCCGGTTTCACTCTCCAGAAAGTCGAGGAGCCATCACAAAGTCTTACTGCCGATCATGGACCAAGAACACGCACATTGGCTGCGGCTGCAGTGGCCGATTCTGACGTTAGCTGTGAGTTTGGCTCTAAGAAATACTATGCCTTGTGCGGCTTCGGCGGCATCCTCAGCTGTGGGATCACACACACGGCGGTCGTTCCCCTTGACCTGGTCAAGTGCCGCCTGCAGGTGGACCCAGACAAGTACAAGAGCATCTTCAAGGGTTTCTCCATCACCATTAAAGAGGATGGCATGAGAGGGCTGGCTAAGGGCTGGGCTCCCACCTTCATCGGTTACTCCATGCAGGGTCTCTGCAAGTTTGGCTTCTATGAGGTGTTCAAGATCACCTACAGCGACATGATCGGAGAGGAAAACACCTACCTGTGGAGGACCTCTCTCTACCTGGCTGCGTCTGCCAGTGCAGAGTTCTTCGCTGACATCGCCCTGGCCCCAATGGAGGCGTGTAAAGTGCGTATTCAGACCCAGCCCGGCTACGCTAACACCCTCAGACAGTGTGCCCCTAAGATGTTCGCCGAGGAGGGAGTCTGGGCTTTCTACAAGGGTGTAGTCCCACTGTGGATGAGGCAGATCCCCTACACCATGATGAAGTTTGCCTGCTTTGAGAGGACCGTAGAGCTGCTGTACAAACATGTGGTGCCTAAACCCCGCGCTGAGTGCTCCAAGGGTGAACAGCTGGTCGTCACCTTCGTGGCCGGATACATTGCTGGTGTGTTCTGTGCCATCGTCTCCCACCCTGCTGACTCCGTGGTGTCTGTGCTGAACAAGGAGAGTGGCAGCACCGCCATCGGAGTGCTCAAGAAGCTCGGGCCCAAGGGTGTGTGGAAGGGTCTGGTGGCCCGTATCATCATGATCGGTACCTTGACCGCCCTGCAGTGGTTCATCTACGACTCTGTCAAGGTCTACTTCTGCCTGCCCCGTCCCCCTCCCCCAGAGATGCCCGAGTCCCTCAAGAAGAAGCTGGGGATTACAGAGTAAAGAAACAAAATGGCGGCCTTATCAACAAATATCTATTCAAAATGGCGGCCTTATCAACAGCAATATAAGATGGCGGCCTTCAAACAACACATCCTTAAGTTAACATCCACACTGCACACCGCTATCTGCCTGGTATAGTCATAGCTGTCCTGTTCTGCCTGTAGACCACCTACCCTGGTCTGAGCTACTTCTGCATATTACATTCAGAGCGAAATATGCCATGTAGAACAGACATGCCGCTACGACGTGTAGAATAAAGAATCATGTTGACTCTTATTAGTAGCGTTTCTATATGCGACGTTCCAAAACATTTTCGTACTGAACATGGCCCTGGTCAGCATGAGTTGGGGTCCATTTCATTTAGATTCcagaagtaaactgaaattccacttcttctttttttaaattataatttCTTAATTGAAATTTTAGTTTTTGGAATTGTTTGAAATGAAATTGAACCCAACCCTACTGGTCAAGAGGGAGGAGGGTTCCCTCCTGTGGGGGAATAGAGGGAAGACGACAACACATGCCATCAGGTTAACACCCTACCACAGTTGGTTAATGTtctaataaataaatgaaaatgtgGAAACATttta

Function

NR:

description
phosphate carrier protein, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K15102 SLC25A3, PHC, PIC; solute carrier family 25 (mitochondrial phosphate transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577387.2 False 1536 mRNA 0.53 8 94505382 94513421
XM_021577379.2 False 1538 mRNA 0.54 8 94505383 94513421
XM_036959614.1 True 1688 mRNA 0.50 7 94505958 94513747

Neighbor

gene id symbol gene type direction distance location
LOC110500169 lap2b coding upstream 1201 94498952 ~ 94504181 (+)
LOC110500139 LOC106561672 coding upstream 100862 94391364 ~ 94437682 (+)
LOC110500101 LOC106561643 coding upstream 187727 94300169 ~ 94317655 (+)
zgc:136858 LOC106561644 coding upstream 205338 94270560 ~ 94300044 (+)
LOC110500081 NA coding upstream 236631 94264009 ~ 94268751 (+)
LOC110500186 LOC106561670 coding downstream 814 94514561 ~ 94520141 (+)
LOC110500215 LOC106561668 coding downstream 15894 94529641 ~ 94541962 (+)
LOC110500196 LOC106561667 coding downstream 28220 94539657 ~ 94556385 (+)
LOC110500230 LOC106561666 coding downstream 74788 94588535 ~ 94602636 (+)
LOC110500246 NA coding downstream 124384 94638131 ~ 94665869 (+)
G206844 NA non-coding upstream 743 94504437 ~ 94504639 (+)
G206556 NA non-coding upstream 15228 94488578 ~ 94490154 (+)
G206555 NA non-coding upstream 17050 94488131 ~ 94488332 (+)
G206554 NA non-coding upstream 23071 94482072 ~ 94482311 (+)
G206553 NA non-coding upstream 23413 94481759 ~ 94481969 (+)
G206858 NA non-coding downstream 12825 94526572 ~ 94527078 (+)
G206859 NA non-coding downstream 13689 94527436 ~ 94528029 (+)
G206851 LOC105030512 non-coding downstream 49226 94562973 ~ 94563894 (+)
G206896 NA non-coding downstream 99366 94613113 ~ 94613397 (+)
G206389 LOC106561642 other upstream 403510 94100979 ~ 94101872 (+)
G206285 NA other upstream 563911 93940486 ~ 93941471 (+)
G205688 NA other upstream 693213 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 706446 93796082 ~ 93798936 (+)
G206850 NA other downstream 43422 94557169 ~ 94562224 (+)
G206908 NA other downstream 118082 94631829 ~ 94632267 (+)
G206926 NA other downstream 192199 94705946 ~ 94706248 (+)
G208404 NA other downstream 1714046 96227793 ~ 96228463 (+)
G208836 NA other downstream 2098682 96612429 ~ 96613459 (+)

Expression


Co-expression Network