LOC110500196 (LOC106561667)


Basic Information

Item Value
gene id LOC110500196
gene name LOC106561667
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94539657 ~ 94556385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577408.2
GGCAGGTACTTGCGGTTGTGTTTGTATCGGAGCTGTGAGATTAAACTGGGCGGCGTGTTCTCGGTCCAAAGACCCACGTTGTGGTTCAAGATTTACACCAAACCTACCTGCACATTTCTCAATAAAATTTTAGGCACTCTGTCTGTACGAAGAGGATGGGAGGCAACAGCAGCAGCCACGTCTCGTATGAAGACGACCACGTTACTTTTGTGAAGGGCATTCGGCTGACTGACAAAGTCATCAATCGGATGAGAGAGGAGTGCCAAGCCCAGAAGGTTGTCCATCCTCGCTCACAGCAGAATGGACCTGCTTCCACGCTCTCAACAGAACCTGTGGTTCCTGTGTCCACACCGGCCCCCACAGTCGATCATTTGGTCCCCCTTCTGGTCTCCCCTTCCCTGTTTATCCCCACAGCCCCTCCACCTGCGGTCCTACCCACACCTCCGTCTCCCCCTGTTCAGCCAGTAAAGCTTACTCCTCCACCTCCTGTCACATTTGTCTCTGCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCAAAGGAATCGATAGTCCGAGCTCCAGCTGTTGAACCTATTGTTCCACCTCTAGATACCAAAGTGCTTCCTCAAGGGGCAGAACCCATACTTCCTCTGGTGCCTTTAGAACCTATAGCGCCATCTTTGGCCCCATCTCCACCAATAGAAGAACCAGTACCCGTACTCCTATGTACCCCTACCACTGAGGAACCTGTAGTTCTGCCGACACTGGCTGAACCTATTGTCCCACTTGTCCCTATAGAACCCGTAGTACCACCTAAGCCTGTGAAACCTGTGGTTCTAGCTTCTCCAGCTGTGGAACCAATTGTGCTGCCTCCAGTGGTTGAATCTGTTGTCCTACATCACCCTGTAGAACAGGTAGACCCACTTACCCCTGACCCTTCACCTGTTGAAGCTACTGTCCTGCCACCTGTTGTGGTTGAGGAAGTAGCAACACCTACCCTCGTAGAACCGGTAGTCCTGCCACCTGTTGTGGAATCTGTCACCATTACGACACCACTTGTTGTTGAAGAGGTTGTCGTACCCACACATCCACCTGTAGAGCCCCTACCTGTCTCTACTCCTCCGCCTGTTGCAGAACCTCCACCTCCCCCAGTCCTAGCACCTATCCCAGAGCCTATTCTGGAGGAACTTCCTCCAGCACCATGTCCCTCCATGGAGCTGGCCACCCTGTCTACTGCATCGGCTGCTAGCAAACCAACTGATCTCCCTCCCCCTGTAGAAGAGCCCAtagctccccctcctcctctctctgccccagtAGAACCCATGGTCAGCATTCCACTACTCCCTCTCATTGAAAACGTGGCTGTTCCAGTCGTGGCTCCTGTTGTGACCCCCCCTGTGGTCCCACTGCAAACTCCATTGGTGGTAGATGAAGAAGTGCTGAGGAGGCAGATCCGAGCTGAGCTGACGAAGGGCCTGGAAGAGGAGATGAAAGTGAAGCGGCAAGAGTTTGAAAAACAgtTGTATGAGGTGAAGGTCCAGGCCAGAGCCCAGGCTCAGATCCAGGAGGAGGTTAAGAAAATCCTGGATGCGGAGAAGGCAGCGCAGGGAGAGAACCTGATGGCGGCCATAGAGAAGGAACGCATGACCACAGAGGATGAGAGACTCATGGCCCAGCTCTACGCCTTGCAATGGATAGAGCTTAAGGCCCACAAactggaggagaaagagaaccaGGTGAAGAAACAAGATGCACTCTTCAGGGAACAGGTCGCCAAGCTGGAAGAAAAGAGTGCTCAGTTCTTCAAAGTCACCACAGAGAACTTCAAGAAGGGCAGAGAGGACGCCCACAACACCTTCAAGCGTGTTGACATCAAGCCAGTGTGTGGTGACCTGCAGAGTCAGATCCTGAAGTGCTACAGGGAGAACACTGGACAAACCCTCACCTGCTCTGGCATCGCCAACTTGTACATGAAGTGTGTGGACAACCACAAGACTAAGAGCATTGGAGGTTAGAAGAGCCTAATTTTTCACCAATGGCGTTACTGTTTAACTAGAGGGACAGGAGCTGAACGCCATCAGCCATCGAGACGCACCAAAAACCAGTtgaactgttctgagaccatgACCACCACAGCTGAAGACACTCCTGCTCcaccatcccttcctcccatccatGGTATCTGTATtaatccccccccctccccccgagAGGGTCAGAGGTAGAATGAGGAGCCCATGTCCTGACCCAGTACAGGCTAGAGGCTGGTACTGATGTTAAAGAGAGCGCACAATATGGTTCTTGGGTACACAAATGGACAGTGCTACTAGCACTACACTGACAGAAAATGGACATTGTTACCATGACTACACAATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACATGTGCACTACACTATGACAGAAAATGGACATTGTTACTGTGACAGGAAATGTGAGACATCTCATCCCTGACTGAATATAAAATGCTTTATACATCTCCACCAATGGAAATATTGGGATTACGCTTTTGCCATTGACAGCAGTATGAAACATAATGGAATGGCCAAGTTGTGAAAGATATTGTGCATTGTTTGTTTGTTGAGTTAATACGCACCTATGCCTTAATGTCCTATCAAAACACAAATGTTGCCTatggaaaaaaaatattgtaattttgATCTTTATTGTTATAAAATACAAACGGATATGGGGGTGGAAA
>XM_021577415.2
GGCAGGTACTTGCGGTTGTGTTTGTATCGGAGCTGTGAGATTAAACTGGGCGGCGTGTTCTCGGTCCAAAGACCCACGTTGTGGTTCAAGATTTACACCAAACCTACCTGCACATTTCTCAATAAAATTTTAGGCACTCTGTCTGTACGAAGAGGATGGGAGGCAACAGCAGCAGCCACGTCTCGTATGAAGACGACCACGTTACTTTTGTGAAGGGCATTCGGCTGACTGACAAAGTCATCAATCGGATGAGAGAGGAGTGCCAAGCCCAGAAGGTTGTCCATCCTCGCTCACAGCAGAATGGACCTGCTTCCACGCTCTCAACAGAACCTGTGGTTCCTGTGTCCACACCGGCCCCCACAGTCGATCATTTGGTCCCCCTTCTGGTCTCCCCTTCCCTGTTTATCCCCACAGCCCCTCCACCTGCGGTCCTACCCACACCTCCGTCTCCCCCTGTTCAGCCAGTAAAGCTTACTCCTCCACCTCCTGTCACATTTGTCTCTGCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCAAAGGAATCGATAGTCCGAGCTCCAGCTGTTGAACCTATTGTTCCACCTCTAGATACCAAAGTGCTTCCTCAAGGGGCAGAACCCATACTTCCTCTGGTGCCTTTAGAACCTATAGCGCCATCTTTGGCCCCATCTCCACCAATAGAAGAACCAGTACCCGTACTCCTATGTACCCCTACCACTGAGGAACCTGTAGTTCTGCCGACACTGGCTGAACCTATTGTCCCACTTGTCCCTATAGAACCCGTAGTACCACCTAAGCCTGTGAAACCTGTGGTTCTAGCTTCTCCAGCTGTGGAACCAATTGTGCTGCCTCCAGTGGTTGAATCTGTTGTCCTACATCACCCTGTAGAACAGGTAGACCCACTTACCCCTGACCCTTCACCTGTTGAAGCTACTGTCCTGCCACCTGTTGTGGTTGAGGAAGTAGCAACACCTACCCTCGTAGAACCGGTAGTCCTGCCACCTGTTGTGGAATCTGTCACCATTACGACACCACTTGTTGTTGAAGAGGTTGTCGTACCCACACATCCACCTGTAGAGCCCCTACCTGTCTCTACTCCTCCGCCTGTTGCAGAACCTCCACCTCCCCCAGTCCTAGCACCTATCCCAGAGCCTATTCTGGAGGAACTTCCTCCAGCACCATGTCCCTCCATGGAGCTGGCCACCCTGTCTACTGCATCGGCTGCTAGCAAACCAACTGATCTCCCTCCCCCTGTAGAAGAGCCCAtagctccccctcctcctctctctgccccagtAGAACCCATGGTCAGCATTCCACTACTCCCTCTCATTGAAAACGTGGCTGTTCCAGTCGTGGCTCCTGTTGTGACCCCCCCTGTGGTCCCACTGCAAACTCCATTGGTGGTAGATGAAGAAGTGCTGAGGAGGCAGATCCGAGCTGAGCTGACGAAGGGCCTGGAAGAGGAGATGAAAGTGAAGCGGCAAGAGTTTGAAAAACAgtTGTATGAGGTGAAGGTCCAGGCCAGAGCCCAGGCTCAGATCCAGGAGGAGGTTAAGAAAATCCTGGATGCGGAGAAGGCAGCGCAGGGAGAGAACCTGATGGCGGCCATAGAGAAGGAACGCATGACCACAGAGGATGAGAGACTCATGGCCCAGCTCTACTGGATAGAGCTTAAGGCCCACAAactggaggagaaagagaaccaGGTGAAGAAACAAGATGCACTCTTCAGGGAACAGGTCGCCAAGCTGGAAGAAAAGAGTGCTCAGTTCTTCAAAGTCACCACAGAGAACTTCAAGAAGGGCAGAGAGGACGCCCACAACACCTTCAAGCGTGTTGACATCAAGCCAGTGTGTGGTGACCTGCAGAGTCAGATCCTGAAGTGCTACAGGGAGAACACTGGACAAACCCTCACCTGCTCTGGCATCGCCAACTTGTACATGAAGTGTGTGGACAACCACAAGACTAAGAGCATTGGAGGTTAGAAGAGCCTAATTTTTCACCAATGGCGTTACTGTTTAACTAGAGGGACAGGAGCTGAACGCCATCAGCCATCGAGACGCACCAAAAACCAGTtgaactgttctgagaccatgACCACCACAGCTGAAGACACTCCTGCTCcaccatcccttcctcccatccatGGTATCTGTATtaatccccccccctccccccgagAGGGTCAGAGGTAGAATGAGGAGCCCATGTCCTGACCCAGTACAGGCTAGAGGCTGGTACTGATGTTAAAGAGAGCGCACAATATGGTTCTTGGGTACACAAATGGACAGTGCTACTAGCACTACACTGACAGAAAATGGACATTGTTACCATGACTACACAATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACATGTGCACTACACTATGACAGAAAATGGACATTGTTACTGTGACAGGAAATGTGAGACATCTCATCCCTGACTGAATATAAAATGCTTTATACATCTCCACCAATGGAAATATTGGGATTACGCTTTTGCCATTGACAGCAGTATGAAACATAATGGAATGGCCAAGTTGTGAAAGATATTGTGCATTGTTTGTTTGTTGAGTTAATACGCACCTATGCCTTAATGTCCTATCAAAACACAAATGTTGCCTatggaaaaaaaatattgtaattttgATCTTTATTGTTATAAAATACAAACGGATATGGGGGTGGAAA
>XM_021577424.2
GGCAGGTACTTGCGGTTGTGTTTGTATCGGAGCTGTGAGATTAAACTGGGCGGCGTGTTCTCGGTCCAAAGACCCACGTTGTGGTTCAAGATTTACACCAAACCTACCTGCACATTTCTCAATAAAATTTTAGGCACTCTGTCTGTACGAAGAGGATGGGAGGCAACAGCAGCAGCCACGTCTCGTATGAAGACGACCACGTTACTTTTGTGAAGGGCATTCGGCTGACTGACAAAGTCATCAATCGGATGAGAGAGGAGTGCCAAGCCCAGAAGGTTGTCCATCCTCGCTCACAGCAGAATGGACCTGCTTCCACGCTCTCAACAGAACCTGTGGTTCCTGTGTCCACACCGGCCCCCACAGTCGATCATTTGGTCCCCCTTCTGGTCTCCCCTTCCCTGTTTATCCCCACAGCCCCTCCACCTGCGGTCCTACCCACACCTCCGTCTCCCCCTGTTCAGCCAGTAAAGCTTACTCCTCCACCTCCTGTCACATTTGTCTCTGCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCAAAGGAATCGATAGTCCGAGCTCCAGCTGTTGAACCTATTGTTCCACCTCTAGATACCAAAGTGCTTCCTCAAGGGGCAGAACCCATACTTCCTCTGGTGCCTTTAGAACCTATAGCGCCATCTTTGGCCCCATCTCCACCAATAGAAGAACCAGTACCCGTACTCCTATGTACCCCTACCACTGAGGAACCTGTAGTTCTGCCGACACTGGCTGAACCTATTGTCCCACTTGTCCCTATAGAACCCGTAGTACCACCTAAGCCTGTGAAACCTGTGGTTCTAGCTTCTCCAGCTGTGGAACCAATTGTGCTGCCTCCAGTGGTTGAATCTGTTGTCCTACATCACCCTGTAGAACAGGTAGACCCACTTACCCCTGACCCTTCACCTGTTGAAGCTACTGTCCTGCCACCTGTTGTGGTTGAGGAAGTAGCAACACCTACCCTCGTAGAACCGGTAGTCCTGCCACCTGTTGTGGAATCTGTCACCATTACGACACCACTTGTTGTTGAAGAGGTTGTCGTACCCACACATCCACCTGTAGAGCCCCTACCTGTCTCTACTCCTCCGCCTGTTGCAGAACCTCCACCTCCCCCAGTCCTAGCACCTATCCCAGAGCCTATTCTGGAGGAACTTCCTCCAGCACCATGTCCCTCCATGGAGCTGGCCACCCTGTCTACTGCATCGGCTGCTAGCAAACCAACTGATCTCCCTCCCCCTGTAGAAGAGCCCAtagctccccctcctcctctctctgccccagtAGAACCCATGGTCAGCATTCCACTACTCCCTCTCATTGAAAACGTGGCTGTTCCAGTCGTGGCTCCTGTTGTGACCCCCCCTGTGGTCCCACTGCAAACTCCATTGGTGGTAGATGAAGAAGTGCTGAGGAGGCAGATCCGAGCTGAGCTGACGAAGGGCCTGGAAGAGGAGATGAAAGTGAAGCGGCAAGAGTTTGAAAAACAgtTGTATGAGGTGAAGGTCCAGGCCAGAGCCCAGGCTCAGATCCAGGAGGAGGTTAAGAAAATCCTGGATGCGGAGAAGGCAGCGCAGGGAGAGAACCTGATGGCGGCCATAGAGAAGGAACGCATGACCACAGAGGATGAGAGACTCATGGCCCAGCTCTACGCCCACAAactggaggagaaagagaaccaGGTGAAGAAACAAGATGCACTCTTCAGGGAACAGGTCGCCAAGCTGGAAGAAAAGAGTGCTCAGTTCTTCAAAGTCACCACAGAGAACTTCAAGAAGGGCAGAGAGGACGCCCACAACACCTTCAAGCGTGTTGACATCAAGCCAGTGTGTGGTGACCTGCAGAGTCAGATCCTGAAGTGCTACAGGGAGAACACTGGACAAACCCTCACCTGCTCTGGCATCGCCAACTTGTACATGAAGTGTGTGGACAACCACAAGACTAAGAGCATTGGAGGTTAGAAGAGCCTAATTTTTCACCAATGGCGTTACTGTTTAACTAGAGGGACAGGAGCTGAACGCCATCAGCCATCGAGACGCACCAAAAACCAGTtgaactgttctgagaccatgACCACCACAGCTGAAGACACTCCTGCTCcaccatcccttcctcccatccatGGTATCTGTATtaatccccccccctccccccgagAGGGTCAGAGGTAGAATGAGGAGCCCATGTCCTGACCCAGTACAGGCTAGAGGCTGGTACTGATGTTAAAGAGAGCGCACAATATGGTTCTTGGGTACACAAATGGACAGTGCTACTAGCACTACACTGACAGAAAATGGACATTGTTACCATGACTACACAATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACATGTGCACTACACTATGACAGAAAATGGACATTGTTACTGTGACAGGAAATGTGAGACATCTCATCCCTGACTGAATATAAAATGCTTTATACATCTCCACCAATGGAAATATTGGGATTACGCTTTTGCCATTGACAGCAGTATGAAACATAATGGAATGGCCAAGTTGTGAAAGATATTGTGCATTGTTTGTTTGTTGAGTTAATACGCACCTATGCCTTAATGTCCTATCAAAACACAAATGTTGCCTatggaaaaaaaatattgtaattttgATCTTTATTGTTATAAAATACAAACGGATATGGGGGTGGAAA
>TU234119
aGCCAATAGAACGGGTGGTAGAGGCGGAAAACCCACTCGCCGACAAATTCTAACAAGGCACCTGTATCTTTTCTTCACGCGAATATCTAGGATTTGTGCCTGGTCTCggagaagcagtatatcctttgcgtcaGAATAATTAAAGAAAATatctttgtccagttcaaggtgaTTAATCGCTGTTcagatgtccagaagctctttttggtcataagagacgGAAATGGAACCGGAAATGCAACATGTGCACTACACTATGACAGAAAATGGACATTGTTACTGTGACAGGAAATGTGAGACATCTCATCCCTGACTGAATATAAAATGCTTTATACATCTCCACCAATGGAAATATTGGGATTACGCTTTTGCCATTGACAGCAGTATGAAACATAATGGAATGGCCAAGTTGTGAAAGATATTGTGCATTGTTTGTTTGTTGAGTTAATACGCACCTATGCCTTAATGTCCTATCAAAACACAAATGTTGCCTatggaaaaaaaatattgtaattttgATCTTTATTGTTATAAAATACAAACGGATATGGGG

Function

NR:

description
PREDICTED: retinoblastoma-like protein 2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577408.2 False 2902 mRNA 0.50 10 94541967 94556385
XM_021577415.2 False 2893 mRNA 0.50 9 94541967 94556385
XM_021577424.2 False 2878 mRNA 0.50 8 94541967 94556385
TU234119 True 553 lncRNA 0.57 2 94539657 94556378

Neighbor

gene id symbol gene type direction distance location
LOC110500215 LOC106561668 coding upstream 5 94529641 ~ 94541962 (+)
LOC110500186 LOC106561670 coding upstream 21826 94514561 ~ 94520141 (+)
LOC110500174 LOC106561671 coding upstream 28220 94505382 ~ 94513747 (+)
LOC118944176 NA coding upstream 29119 94512606 ~ 94512848 (+)
LOC118944177 NA coding upstream 31353 94510373 ~ 94510614 (+)
LOC110500230 LOC106561666 coding downstream 32150 94588535 ~ 94602636 (+)
LOC110500246 NA coding downstream 81746 94638131 ~ 94665869 (+)
LOC110500275 LOC106561664 coding downstream 130460 94686845 ~ 94701715 (+)
LOC118943818 NA coding downstream 151799 94708184 ~ 94710432 (+)
LOC110500292 LOC106561659 coding downstream 158768 94715153 ~ 94770734 (+)
G206859 NA non-coding upstream 13938 94527436 ~ 94528029 (+)
G206858 NA non-coding upstream 14889 94526572 ~ 94527078 (+)
G206844 NA non-coding upstream 37328 94504437 ~ 94504639 (+)
G206556 NA non-coding upstream 51813 94488578 ~ 94490154 (+)
G206555 NA non-coding upstream 53635 94488131 ~ 94488332 (+)
G206851 LOC105030512 non-coding downstream 6588 94562973 ~ 94563894 (+)
G206896 NA non-coding downstream 56728 94613113 ~ 94613397 (+)
G206899 LOC100194703 non-coding downstream 60356 94616741 ~ 94617003 (+)
G206902 NA non-coding downstream 68772 94625157 ~ 94625377 (+)
G206909 NA non-coding downstream 76178 94632563 ~ 94632762 (+)
LOC110500139 LOC106561672 other upstream 104285 94391364 ~ 94437682 (+)
G206389 LOC106561642 other upstream 440095 94100979 ~ 94101872 (+)
G206285 NA other upstream 600496 93940486 ~ 93941471 (+)
G205688 NA other upstream 729798 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 743031 93796082 ~ 93798936 (+)
G206850 NA other downstream 784 94557169 ~ 94562224 (+)
G206908 NA other downstream 75444 94631829 ~ 94632267 (+)
G206926 NA other downstream 149561 94705946 ~ 94706248 (+)
G208404 NA other downstream 1671408 96227793 ~ 96228463 (+)
G208836 NA other downstream 2056044 96612429 ~ 96613459 (+)
LOC110500169 lap2b coding upstream 35476 94498952 ~ 94504181 (+)

Expression


Co-expression Network