LOC110500230 (LOC106561666)


Basic Information

Item Value
gene id LOC110500230
gene name LOC106561666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94588535 ~ 94602636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959631.1
gaaagcaaatggcttcTACTGAAAAGAGAGAACCAATAGAATAAAAACAATTCTCAACAACTCCCAATTTTTTAGTTAACAGCCGCATTAATCACTTAATCGGACCATGCTTAATCCGGCCATGTTTCTCACTGAAGTGAATTTACTGAGAGACCGCCAACGTGCTTTTCCTCAATATTCTTTTCAGTAAATTAACTCCTCCCACTCGAAATCCTCAAGCTTTTCCCTCATTGGCCGATTTGTGATATTCCGCCATATTCAAACTTCCGCCGTCACTTTTGGTTGGATTGATCGATTTACTGCGGATTTCTTTCATCCATCGTTGCAATTTCCATTGTTTTGAATTAGCGATATTGGCTAGCTTCCTACTACACCCAACCTCTAAAATGGAGGAGTCAGAGGTGGGCGAATTATCTGTGGAAGACGAGCCGAAGAGACGAAGGATTTCCTCGAAGAGAACGTCCACGGTCAACTCAGAAACCTCCCCCGCCACTGTCAACAACTCCAAAAAACCTCCACTGTGCCGAGGGAGTTCCTTCACCTTTCTGACTCCAGGAACACCATGGGACTTCAGTCTGAAGAGGAAACACAAAGAGCCCAAGGATGATGACACTGTCAGTCTGTCCAGCTTTGACCTCAAAGTAAAGAGAAAACGCAAAGAGAAAAAGGAGGATGACGACACCGTCAGTCTGTCCAGTTTTGACCTCAAAGAGCCCAGTAACAAGCGTGTGCGACCACTGAGCCGGGTGTCATCTCTGGCTAACCTGATCTCCCCTTCCAAGAATGGAGCCGTCCGACGCTTTGGTCAAACCATCCAGAACATGTCGCTGCGGGGTGACAGCAAGTCGCCGGGGGCGTCCCTGAAGTCGTGCAGTAAGGCAGCGGGCCCAACACCTCCCAAACGTAGGAACAGCACTCTGTGGTCTGAAACACTGGACGTTCACCAGAAGAGCACCTTCTCCACCAAAGAGATTAAGAGACAGGAGGCCATTCATGAGCTGTCCAGAGGAGAACAGGACCTTATTGAAGACCTCCAAATGGCACGAAAGGCATATCATGATCCCATGCTGAAGCTTTCCATCATGACAGAGGAGGAGCTAACTCATATATTTGGAGATCTGGATTCTTACATTCCACTTCATGAAGACTTGTTGGATAAGCTTGCAAAAGGCACCGGTCCTAATGGAACAGTTGGTCAGATTGGACAGATCGTCGTGGACTGGTTGCCAGGTCTGAATGCGTACAGAGACTATTGCAGTAACCAGCTGGCTGCCAAGGCCCTGTTGGACCAGAAGAAGCAGGACCGGAAGGTGCAGGACTTCCTGCAGCGCTGCCTGGAGTCTCCCTTCAGTAGGAAGCTGGACCTGTGGAGCTTCCTGGATATCCCCAGGAGCCGTCTGGTGAAATATCCCCTACTGCtgagagagatactgagacatACACCACCAGATCACCCTGACGTTCCCTGTCTGGAGAAGGCGATAGCCATCATCCAGGGTGTGCTGTCTGACATCAACATGAGGAAAggagagtcagagagtcagtaCTACATTAATAAGCTGGAGTATCTGGACGACAGGCAGAGAGACCCGCTCATCGACAACTGCAAGACCTTGTTGTGTCACGGAGAGCTACGCAACAAGAGTGGCTCGAAACTGCACGTGTTCCTGTTCTCTGAGCTGCTGGTGCTGACGAGGCCGGTGACACGTCACGAGCGGAGCTGCTACCAGGTGTACCGTCAGCCCCTCCCCATCAGAGACCTGGCTCTGGAGGACCTGCAGGATGGAGACGTACGCATGGGAGGGTCATTCAGAGGGGCCTTCAGCCAGGGGGAGAAAGCTAAGAACGTGTTCCGCGTGACCTCCCTGGACCCGACCCACGGCCAGTCTCACACTCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTCAACTGTCTCCGCAGCGCCATCGACGCCCAACCTCAACAGCAGAGGGCGCCACTCAGAGATCAGCACAGTGAGGCTACAACCATGACCAGGGCCAAGCGTCGTTCTTCTGTGGTGTCCATGTCTGATATGGTGGGGGAAGGGGCAGATGAGAACGTCTGGCACCAGGTCGGTGAGCCAATCCTTGGGTGTAAAGGCACAGAGACACTCCCCGCGTCTGGTTCTTCAAGTAAAATCAAAAGAGAGTGGAGCCGTGGTACTCATCGCAGGAGGAAAGAGACCGGGGTTTAGGAGAACGGAAGAGTCCACGGAGCCTCGTGGGATGTCTACACCTGTACACCTTCATTCATTTGTATTTCTACTGtgtcttcttcttctatggtgtTATGTTGGACTTCTTACTTGTGATATTAATGTGGAGGCTACTTGTTTGTGAATTTCCATGACACCTGTCTGTCGAGTAGTGATTTTGCATAAAAGAGTATGTATGACAATAGCAGTGATGTACCATGACGACCATGTAGTAAGCTATGTCAAAACCGTCCAATCACATCCGTCCAGTCTGTGCACTGCAAACCAATGAAATTGAAGAGTTCTGTAAATTTCAGGAGAAAAAAAAGTTATTGGTTTACTTTACAAGGGAATGATATTTGCCAACCAAATTGACTGAAAATGGTTGTTACAGCGATTATGAGAATTAGGATTTTAggattaggattttttttttaaatgttaaaatgACTAACTCTGTTTTTTTATACAAAATAGCACTGTTTTTAGCTCTTAGAATAAGAATAAATGTTGCTTGGAACTGGAATTTATTAACCACTTGATTTGATAAGTCATTATTTCTACAGGGTTGGTCCGTGTGTCCTTCGTTACTATTAAAAAGGCCTCTGCAGGCTTTGTTGAGACGTTTCTCTGTGCCCCAAATGACAGCCTATtccatgttttttggggggggggggggggggtttcataGCCCTAtgtggcctggtcaaaagtagttacACTATATCGGGTTGTGGGGTGCCATTTTGAGACTGGAGCCTCTCTTTCCATGCAGCACCATGTGTTGAGGTTGATCTTCAGTAGTGTACACAGTGCAGACCACATGCAAATATTAGTCAACTGTCTGATGTGTTGTTGTGGAGACAAAGGTGACAAAGGATAAAATGAGTATGTTGTTGTGAGAAGGCTCGGCCGATTCTCTACCCTCCTTCACAAGGAAGTGTTCACTCTCACATTTTAAAAGTCTTGGATTAGTGTAAGTACGGCAGAAGGGAGTTTCTAACATATTCCTACAACCAGCCCATTCCTTTTAAATCCGTGAAGGAGAGTGCGCAAGTGTAGGGTATGAGGGCACGCctggagagaagggtagagaattGGACTGCAACTGAGTTGTATTAATGGTGGGAAAGTAAAGGTTTCGGAATGGGTTCTCTTGAGAACTGGAGGTGAGAGAAGCACGAAACTGACACGACAATCAACCACAAGTTATGCTGTGTGCAAAGAGAGGGGAACAAGTATCACTGGAATGCTTTGTGTGAAAAGGGAAAGACCAATTAGATTATGTGAGGGAAAATCTGTGAGAAGCTACCTGTGTTCCTTTTCAATTAAAAATAAAGAGCTTTGATGTTTGAA

Function

NR:

description
neuroepithelial cell-transforming gene 1 protein-like isoform X1

GO: NA

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959631.1 True 3578 mRNA 0.47 13 94588535 94602636

Neighbor

gene id symbol gene type direction distance location
LOC110500196 LOC106561667 coding upstream 32150 94539657 ~ 94556385 (+)
LOC110500215 LOC106561668 coding upstream 46573 94529641 ~ 94541962 (+)
LOC110500186 LOC106561670 coding upstream 68394 94514561 ~ 94520141 (+)
LOC110500174 LOC106561671 coding upstream 74788 94505382 ~ 94513747 (+)
LOC110500246 NA coding downstream 35495 94638131 ~ 94665869 (+)
LOC110500275 LOC106561664 coding downstream 84209 94686845 ~ 94701715 (+)
LOC118943818 NA coding downstream 105548 94708184 ~ 94710432 (+)
LOC110500292 LOC106561659 coding downstream 112517 94715153 ~ 94770734 (+)
LOC110500303 LOC106561658 coding downstream 173304 94775940 ~ 94813234 (+)
G206851 LOC105030512 non-coding upstream 24641 94562973 ~ 94563894 (+)
G206859 NA non-coding upstream 60506 94527436 ~ 94528029 (+)
G206858 NA non-coding upstream 61457 94526572 ~ 94527078 (+)
G206844 NA non-coding upstream 83896 94504437 ~ 94504639 (+)
G206896 NA non-coding downstream 10477 94613113 ~ 94613397 (+)
G206899 LOC100194703 non-coding downstream 14105 94616741 ~ 94617003 (+)
G206902 NA non-coding downstream 22521 94625157 ~ 94625377 (+)
G206909 NA non-coding downstream 29927 94632563 ~ 94632762 (+)
G206910 NA non-coding downstream 31560 94634196 ~ 94634546 (+)
G206850 NA other upstream 26311 94557169 ~ 94562224 (+)
LOC110500139 LOC106561672 other upstream 150853 94391364 ~ 94437682 (+)
G206389 LOC106561642 other upstream 486663 94100979 ~ 94101872 (+)
G206285 NA other upstream 647064 93940486 ~ 93941471 (+)
G205688 NA other upstream 776366 93810360 ~ 93812169 (+)
G206908 NA other downstream 29193 94631829 ~ 94632267 (+)
G206926 NA other downstream 103310 94705946 ~ 94706248 (+)
G208404 NA other downstream 1625157 96227793 ~ 96228463 (+)
G208836 NA other downstream 2009793 96612429 ~ 96613459 (+)
G209586 NA other downstream 2883840 97486476 ~ 97486772 (+)

Expression


Co-expression Network