LOC110500345 (LOC106561680)


Basic Information

Item Value
gene id LOC110500345
gene name LOC106561680
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94959918 ~ 94974913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959851.1
ATACTACTAGAAATAAATGAGACTAATATGAACTACGACAAGCTGAGCAGAGCCCTGAGATACTACTATGACAAGAACATTATCAAGAAGGTGATCGGACAGAAGTTTGTCTACAAGTTTGTCTCGTTCCCGGAAATCTTAAAGATGGACCCAGCAGCAGTAGAGATGGGCTTGGCTTCCGGTCGGGTGACGCTCCACGAAGACCAGGACTTCCAGGACctggatgtagaggaggaggaggaagaagaggaggtgcaGCAGCAGAGGAGGGCCCTGGGGGCGGCGTTGGAGGTGGCTGCGGCGGCCCAGCAGGCTGCGTGTCATAACAAGTACTTCGGCCCTGGCCTCTACTCCTCCTTCAGCATCAAcaccctccattctcctccagaGGAGCTGCTCCGGGCCctgagggagagacagcaggacGAGGCCCGCTCCGGAGTCATCCGATTTGGGACGGGTACCACCGAGAATACTCCACCCTCACCGTCCCTCATCAAGCCTGAGCCTTCATCACAATCCTTCAGCACCCACAGGCCAGCCaaatcctcccctctccaccattacacccaccaccaacaccagcGCCACTCCccgccctcctcctccccccacagCCATAACCCCCAGCCAGGGCCAGGCCGAGGAGGCTGGAGCCCAGAGGCTGAAgaagatgaggagggggaggactcAGACCAGGGAGCCCAGCCTCTGAATCTCTCTtctgggcatagagagagagagcaggccctGCAGCCTCCGGAGAAGAGGACCAGTGGTGGTAGTAGAGTTAGTGGTAGTAGTCATGGAGACAGTTGTCATGGACTCCCACCCAAAACCAATAAGCCCAAAGCCCTAGAGATCTCCGCCCCCTCCCTGCTCTTGACAGGAAGTGACATCGGCTCGATAGCCCTCAATAGCCCCGCCCTACCGTCCGGATCCCTCACCCACGCCTTCTTCACTGCACAGACTCCATCTGGTCTGCTGCTGGGCCACAGCTCTCTGTTATCAGGTGTCCACTTCTGGAGCAGCCTAAGTCCCGCAGCCCCTCTGAGCCCGGCCAGGCTTCAAGGACACGGATCACTGTTTCAGttCCCCAGTCTAATGAATGGACACCTCCCCATGCCAAACTTGGACGGGTCCCCCTCACCCCTGCTCCTGTCCCCTGCCAATCACAAGTCATGATTCAGGCTCTCAAAAACCCAATCCAGCCCATTGGACCAACTGCCTCCTGCATCAGCAACTCTTCAATGTGAATTCCCATCAGCCTTCACTTGATTTTCTTCCAAATTTGCTTATGATTTGGAGTCtcaacccacccctcccccctcagccatctcaaccccccccccccccccctctgaacCCGCCTCCCCCATTttacccctccatccatctcacCCCCCTCtgaacccccctcccccatctctagAAGTATAATTGTGATCATCATTACAGAATGTGAAACATTGTTGTTTTCATTGTATGATATTGAATTGTATTGAATGCACTATGCTTTTCAAATAGCGCCGGCTGTGCCTTTTGAAAATGAAAGACCATTGACGTGTTTTTTGtccccccccaaaatatatatatatatatgaagacGGGGTTCCAAAATCAATGAAAAAGCTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTCGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTGATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGCTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTGATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGCTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTTTATACTGGAGCGgatctatacagtatatattctgTATAATGTTATATTGGTCTTGTTTTGAATAAAACTGAAGCATTGAATGCTGTAACGCTGCCGTCTTCAGTTATACAGCA
>XM_036959842.1
ctgCGTGCTTACATAGACGGCAAAACGCCTGGGGAATCGTAGGGAAGAGGAAGCCAGCCggctctctgtctgcctgctccAACTTCCTGCtcagaaagagaaaaagaagcCAGGATCCTATTTCAGTCCAGCAGAGCCGTGTAGCCTAGCTAGAcggcagtcagtcagcatggaaaAACAAGGGGTCATACACATTTCATCATAAACGTTTTCAAGGAGTGGAAGGAAAGGCAAACAAGAGATCGCAGGTATGGACAGTGCCATCACGTTGTGGCAGTTCCTGTTGCAGCTGTTGTTGGACCAGAGCCACAAGCACCTGATCTGCTGGACGTCGAACGACGGGGAGTTTAAACTGCTCAAGTCTGAGGAGGTGGCCAAGCTGTGGGGGCTCCGCAAGAACAAGACTAATATGAACTACGACAAGCTGAGCAGAGCCCTGAGATACTACTATGACAAGAACATTATCAAGAAGGTGATCGGACAGAAGTTTGTCTACAAGTTTGTCTCGTTCCCGGAAATCTTAAAGATGGACCCAGCAGCAGTAGAGATGGGCTTGGCTTCCGGTCGGGTGACGCTCCACGAAGACCAGGACTTCCAGGACctggatgtagaggaggaggaggaagaagaggaggtgcaGCAGCAGAGGAGGGCCCTGGGGGCGGCGTTGGAGGTGGCTGCGGCGGCCCAGCAGGCTGCGTGTCATAACAAGTACTTCGGCCCTGGCCTCTACTCCTCCTTCAGCATCAAcaccctccattctcctccagaGGAGCTGCTCCGGGCCctgagggagagacagcaggacGAGGCCCGCTCCGGAGTCATCCGATTTGGGACGGGTACCACCGAGAATACTCCACCCTCACCGTCCCTCATCAAGCCTGAGCCTTCATCACAATCCTTCAGCACCCACAGGCCAGCCaaatcctcccctctccaccattacacccaccaccaacaccagcGCCACTCCccgccctcctcctccccccacagCCATAACCCCCAGCCAGGGCCAGGCCGAGGAGGCTGGAGCCCAGAGGCTGAAgaagatgaggagggggaggactcAGACCAGGGAGCCCAGCCTCTGAATCTCTCTtctgggcatagagagagagagcaggccctGCAGCCTCCGGAGAAGAGGACCAGTGGTGGTAGTAGAGTTAGTGGTAGTAGTCATGGAGACAGTTGTCATGGACTCCCACCCAAAACCAATAAGCCCAAAGCCCTAGAGATCTCCGCCCCCTCCCTGCTCTTGACAGGAAGTGACATCGGCTCGATAGCCCTCAATAGCCCCGCCCTACCGTCCGGATCCCTCACCCACGCCTTCTTCACTGCACAGACTCCATCTGGTCTGCTGCTGGGCCACAGCTCTCTGTTATCAGGTGTCCACTTCTGGAGCAGCCTAAGTCCCGCAGCCCCTCTGAGCCCGGCCAGGCTTCAAGGACACGGATCACTGTTTCAGttCCCCAGTCTAATGAATGGACACCTCCCCATGCCAAACTTGGACGGGTCCCCCTCACCCCTGCTCCTGTCCCCTGCCAATCACAAGTCATGATTCAGGCTCTCAAAAACCCAATCCAGCCCATTGGACCAACTGCCTCCTGCATCAGCAACTCTTCAATGTGAATTCCCATCAGCCTTCACTTGATTTTCTTCCAAATTTGCTTATGATTTGGAGTCtcaacccacccctcccccctcagccatctcaaccccccccccccccccctctgaacCCGCCTCCCCCATTttacccctccatccatctcacCCCCCTCtgaacccccctcccccatctctagAAGTATAATTGTGATCATCATTACAGAATGTGAAACATTGTTGTTTTCATTGTATGATATTGAATTGTATTGAATGCACTATGCTTTTCAAATAGCGCCGGCTGTGCCTTTTGAAAATGAAAGACCATTGACGTGTTTTTTGtccccccccaaaatatatatatatatatgaagacGGGGTTCCAAAATCAATGAAAAAGCTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTCGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTGATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGCTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTGATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGCTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAACACTTTGTAATGTTCTTTGTAATGTTCTTTGTAATGTTCTTTGTTTATACTGGAGCGgatctatacagtatatattctgTATAATGTTATATTGGTCTTGTTTTGAATAAAACTGAAGCATTGAATGCTGTAA

Function

NR:

description
PREDICTED: ETS domain-containing protein Elk-3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959851.1 False 2268 mRNA 0.47 4 94959918 94968140
XM_036959842.1 True 2625 mRNA 0.48 5 94959943 94974913

Neighbor

gene id symbol gene type direction distance location
LOC110500320 LOC106604557 coding downstream 178550 94777558 ~ 94781368 (-)
LOC110500283 gdi2 coding downstream 273097 94665928 ~ 94686821 (-)
asb13b LOC106561665 coding downstream 348126 94604044 ~ 94611792 (-)
LOC110500221 LOC106561669 coding downstream 430310 94526548 ~ 94529608 (-)
LOC110500153 LOC106561673 coding downstream 542910 94412244 ~ 94417008 (-)
trnay-gua NA coding upstream 34689 95009602 ~ 95009691 (-)
LOC110500368 LOC105021811 coding upstream 40762 95015675 ~ 95020429 (-)
LOC110502417 LOC106561684 coding upstream 122466 95097379 ~ 95124547 (-)
LOC118944198 NA coding upstream 296180 95271093 ~ 95271272 (-)
parietopsin LOC106561711 coding upstream 653536 95628449 ~ 95632062 (-)
G207421 NA non-coding downstream 38893 94920075 ~ 94921025 (-)
G207287 NA non-coding downstream 93563 94863530 ~ 94866355 (-)
G207392 NA non-coding downstream 104549 94854648 ~ 94855369 (-)
G207373 NA non-coding downstream 135692 94823436 ~ 94824226 (-)
G207358 NA non-coding downstream 146935 94812480 ~ 94812983 (-)
G207454 NA non-coding upstream 33067 95007980 ~ 95008186 (-)
G207283 NA non-coding upstream 39023 95013936 ~ 95015257 (-)
G207462 NA non-coding upstream 45578 95020491 ~ 95020717 (-)
G207471 NA non-coding upstream 74971 95049884 ~ 95050507 (-)
G207487 NA non-coding upstream 106129 95081042 ~ 95081243 (-)
G207340 LOC105021815 other downstream 183562 94762662 ~ 94776356 (-)
G207249 NA other downstream 330179 94629437 ~ 94629739 (-)
G207244 LOC100194703 other downstream 342686 94616915 ~ 94617232 (-)
G206750 NA other downstream 631735 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 646000 94313390 ~ 94313918 (-)
G207858 LOC106561692 other upstream 402810 95377723 ~ 95408714 (-)
G207959 NA other upstream 549055 95523968 ~ 95524227 (-)
G207884 NA other upstream 629315 95604228 ~ 95609786 (-)
G207876 LOC106561706 other upstream 707124 95680851 ~ 95686864 (-)
G208077 NA other upstream 854461 95829374 ~ 95832362 (-)

Expression


Co-expression Network