LOC118943829


Basic Information

Item Value
gene id LOC118943829
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95020413 ~ 95024445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039112.1
AGAAGAACAGACGGGCATTTTCTACTCCAGTCAAGTCTCTTCTCCGTGCGGAGCCCAAATTTGCGGGAAAGATTCGATGTAGCCAAGATATTTATCGTCGAACTTGTTACATTGTTGCAATTTTAATGAAACAGTTTCAGTCACAGTGTTACAATCAGATACGTGATACAATATAGTCTCTTGCTCGCCGGGCTAGACAACAACAGTTGCAGATTCAGTTGTGACCACTAGGAGGTAATGTTCTCACATGGATTGAAGTAGCCAACACTCCCAACCATTGGGCGAACTGGGACAAAAATTCAGCCTTggcaacactctaaccactaggctaccccctctgaatcagagaggtgcccatggagcagttgttgggggttaactgccttgctctaTGGCAGAACAGCATTTCTTTTCCTAATAAAGAGGATGGGGAAACATACCACGCTAcatcttggtccactccttataacgaacgtgacagaagatcccaccacaaacggaccaagcagtgtggccaggaggagcagacatcctggacatgggaggagatcatCTTGGTCCACTACTTATAACGATCGTGACACAGACAGTCCCTGAATTGAcctttttctttgttttggccgggtatggttctcaatcagggacagctgtctatcgttgtctctgattgggaaccatacttaggtaccttTTTCCCACATGGTTTCTGTGGATAgttcatttctgtttagtgttttacaccTTACAGGACAGTGTTGgttattctctttgttatttctgttatagtgttcagttctaataaaaagcatgaacacttaccacgctgcgctgtggtccgatgattcctcttcctcttcttcagacgacgaATACCGTTACAAATGCTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039112.1 True 888 mRNA 0.45 3 95020413 95024445

Neighbor

gene id symbol gene type direction distance location
LOC110500357 LOC106561695 coding upstream 6609 95007278 ~ 95013804 (+)
hal hal coding upstream 15255 94978217 ~ 95005158 (+)
LOC110500336 LOC106561679 coding upstream 64125 94890338 ~ 94959350 (+)
LOC110500328 LOC106573059 coding upstream 147974 94814776 ~ 94872439 (+)
LOC110500303 LOC106561658 coding upstream 207179 94775940 ~ 94813234 (+)
LOC110502411 LOC106561694 coding downstream 33919 95058364 ~ 95092306 (+)
LOC110502428 LOC106561683 coding downstream 100053 95124498 ~ 95140955 (+)
LOC110502438 LOC106561685 coding downstream 124471 95148916 ~ 95177761 (+)
LOC110500385 LOC106561686 coding downstream 160451 95184896 ~ 95214670 (+)
LOC118944165 NA coding downstream 178992 95203437 ~ 95203568 (+)
G207048 NA non-coding upstream 5132 95013927 ~ 95015281 (+)
G207006 NA non-coding upstream 56270 94963118 ~ 94964143 (+)
G207035 NA non-coding upstream 85260 94934823 ~ 94935153 (+)
G207002 NA non-coding upstream 116466 94884164 ~ 94903947 (+)
G207073 NA non-coding downstream 5169 95029614 ~ 95029813 (+)
G207098 NA non-coding downstream 61013 95085458 ~ 95085817 (+)
G207099 NA non-coding downstream 61393 95085838 ~ 95086106 (+)
G207101 NA non-coding downstream 69946 95094391 ~ 95094825 (+)
G206887 NA non-coding downstream 70778 95095223 ~ 95095875 (+)
G206926 NA other upstream 314165 94705946 ~ 94706248 (+)
G206908 NA other upstream 388146 94631829 ~ 94632267 (+)
G206850 NA other upstream 458189 94557169 ~ 94562224 (+)
LOC110500139 LOC106561672 other upstream 582731 94391364 ~ 94437682 (+)
G206389 LOC106561642 other upstream 918541 94100979 ~ 94101872 (+)
G208404 NA other downstream 1203348 96227793 ~ 96228463 (+)
G208836 NA other downstream 1587984 96612429 ~ 96613459 (+)
G209586 NA other downstream 2462031 97486476 ~ 97486772 (+)
G209591 NA other downstream 2594172 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 2673666 97695939 ~ 97711108 (+)

Expression


Co-expression Network