LOC110502428 (LOC106561683)


Basic Information

Item Value
gene id LOC110502428
gene name LOC106561683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95124498 ~ 95140955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959898.1
CAAGCTTCAGCAAACTCAAAGGGATAAAGGTTACATTTACAGTAGATGAACGCGGAGGTGGATTGTCGAACATTATTCAGGCACCCAGTGCAAGCTTAGAGATTCTACTGGgattcaaatgtttgtttttaacACCAGATGTACATAATGTGGGGAGTTAATCAACACTTTTATGGAGTGTATAACTGACTGgaattatttgcaaatgatgaTGACAGATTTTAGACCCGGACCTCTGTATTTCTTTGATCAGCCTACAGGACGGGGACATAGGAAGCGCCCCAGAATGCCCTTGGAGCATTGCTTTGATCTGGCAAATGTGGGCGTGCGCTTGGCAACAATCAAAAGCCTATGCGCTCACAGCGAGTGCGTTAACGATGACAAATATGATGCAAAGAATGAAGACAATGCACACAAAGTGCCAAATAAACCCTCTACCACTGGTAAACCAGATACCTGGCCCTCTATCAACGGATCGTTGGACATGGGTGGTGATGAGAGGAATCCGGAGGCCGCGGCCGTGCCAGCAGACTGGTTGGATGACATGGACCCGATGGATGCATACAAGCACATGGCCCCTCAGTTGTTGAGCGAGTTGGGGAGTGTGCTTTTGCAGTATGAAGGGAGTGAGGAGGGATGTATTCCACACGGCCTCGTGAACGTTCTGAATTACTCATGGAAGGATTTGACCGCCGGGGCAGTTTATGTCAAACCATCTTGGAAGTTGGGTGTCGGCAGCGGGAGTGGTGATGGCGGGAAACCTCGCAAGTCGAAGGGCTTCATGAATTTCGATGAGACTCTTCGGCAGATGGCGGGAAAGAGAAAGACAAAACAGAAAGCGTCCAAGGTGGAAAATGGGTCTGAGAGACAGCCTCAAGACTCCAATTTGCGCAAAAGGTTGTCAGTTTCCCATGCACAAAAAGCTCATGTGGCCACAACTATAAGTTTCTCCATCTCTTCAAAAACCTATGAGGAGCAAGGTTGGATCGTCCAGCCTAAGGAGCCAACCCATGAGGAACCTCAGTGGACTAAGCTGTGTCATTGGGTGGTAGAGAGGCTGCAACTGGCTATAAAACAGACAACGGAGCAGGCAGAGAGTGGGCTGAACAAACCACCCATCCTCCGTCACTACGGGGATGCCAAGCCACACTTTAAACACcagaagaagacaggaggaggAAGCGGAGGAGGAGGCAAGACCTGGCCTTACCCTCAGATACCAGAGGTGAACCAGGAGGACCAGGATTCATTGCGGCAGAAACTACACTACAGGATCAATGATGGTTCCTCCTTCCTATATTATCCGTCTGGTTTTGTAGCAGTGTGTCAGAGCCACTCTGGTCTGTCCTGTGGAGGGTTCTATACTAATGTGTTCAGTGACCAACTCAGCGCTGTTACACTGGCCAGCATCACCGCAGTAGGACGGGGCACCGTCACACACCCACTCAGTGGGACTGTTACTGCTGTGTGGGATCAGCGTGGTGGGATGACGTGTGACCCAGAAGGAGCTGTCACTAAGGAGTGGACCTGGCAGATTGGGGTTAAGGAGAGGATAGTCATTCAGGTGTCTGATCAGATCTCAGTACGGATGTTGAGCGGTACCTGTACCACCCTCAGCTTTAAGAGTCAGAATGAGAGTGTCCAGCTACCACTGTCCCCCCTGCCCAACATCACCCCAACTAAAGAAGTGGCCTGTCTGCAGACTGAGGGGGCGTTCACCTCTCTGGCAGCCCAGGAGCTCTCCCTGAGTAAGAAGCACCAGAAGAACCAGGGCCAGACCATAGACACCAAGAGGGTGTCAGTGCGTTCCAGTGAGGTGCTACAGGTGACCCGGGAGTTGGAGAAGCTGGAAGAACCCTGTCTcttcaggagaggaggagggcgggCAGGACGAGAGCTGAAAAGACTCCAGAGGAGAATATGTAATATCCTGGACGACTGGCTGGAGTTCTACCGGGTCACCACAGGTATCAAGTGCCCAGATATGGAGCGGATATCTGATGGTCCAATGCGGCCCAGACTGAAGAGAGAGGGCCAGTCAGCAGCGCTgccctccctccaccccaccaCAGGGCTGTCAGACAGTACCCGGGGTCTACCAGAGGGGGGAAGCACAGCGCTACATGCCAGCACTAGACACCTGCCACCTGCCTCAGATGTCCTCCTGCCAGGCTCCACCCACAAGTTGTCATGGACATTTTCTCCAAAGAAGCAGGgcaaggagggaagagaggagccCCTTCATTTCACACAGTCAGGGACGTTCAGAGTCCACAGCAACGTCAGACTGGAgtctgtagtgatccCGAGATGCAGTCCAGAGCTCCGTCTCACTGCCCAACTTCCCCACTACACATCCTCAAGCCCCTCCACCCCTTACCCCCTTTACAGCCCGTGTCCTGCCCAGCTTAGGGCCGTTCTCCTGGGGTTAGAGGGCCGGACACACAGGCTGTGTCGCTGTAGCTCCAGGACCATGCCAGTCCTGACAGATCAGGAGTATGATGCCTTCATTTGGGGCCAGCCCCCCCACAGTGAACAGATCCTGGTGGTGTGTGTGACAGCCCTGCACCAGACCCCCCTCGCCCCTCACATCCCCTTGTTGCCCAATGAGGACATGCTGGAGCTGCTCTACGAGAGGATGAATAAGAACAGGACCATGCCATGCACTCAGAGTCAGCTGGACTCGTTCCGCCTGGTGAGGTATGAGCTGTCTACAGGGAAGACCTGCCCAGCTACCCACAATGCACTGCTGCAGCAGAGACACAATGCCGCCCCTGGGATGTTTCTGATGTACATCAGAGGGAAGCTGCTGTTCGCTGACTACATCTTCAACGGCTACAGCTGCTCCGTGAGGGACCTCCACAAGCAGATCTCTAAAACTAGAGGGGACTACAGACAGGGCCAGAGCCTGCCCTCAGACTACAAGTTCAGTGCCCAGGTGAAGAGTCCAGCAGTAGGGAACCCACCTGGCCATCAGGGAGCTCAGAAGGTCCCTGATGGACGAGGAGACATCCCTCATGGAACACCTGCCCTGTTAGAGAAGGGAAAAGTCCCAAACCAGTGAGCGGAAATTGACTCAGGGACCTGTGACATCATCGGTCACGTTAAAGAGAGACACCGCTCATGCTTAAAAAGCCAAAAAAGACTTCTGCTGCATCCTCACTGCCTGTACTCACCACACTGAACAAAGGTCAGCTCCTATCAGAGCTGCAATGTAAGACCCTTTCTGGTGTCACAAGTCATCAGGAGACACTGGAGAAAAACCTCATCAGAGCTGGGCTAGCTGGCTGGAGACAGACAGTCTGCTGGGAGAGAGGGACTAAGTCTAATATTAGGTGcactacactgtaaatgtaatGGGAGATCTGTATTACATCTATGACTGTCTTGCACACGTCTTGTTTGACTGAAATGAATTCAACGAAGCGATGCTCCACATACTGTAAATCATAGCACTTTATAGAACTCAGTTGCATCATGGAAGATCTTCCTTATTTTTCTACGGTCTACAAATAAAGACTGTTGTTTC

Function

NR:

description
uncharacterized protein LOC109867479 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959898.1 True 3529 mRNA 0.52 18 95124498 95140955

Neighbor

gene id symbol gene type direction distance location
LOC110502411 LOC106561694 coding upstream 32192 95058364 ~ 95092306 (+)
LOC118943829 NA coding upstream 100053 95020413 ~ 95024445 (+)
LOC110500357 LOC106561695 coding upstream 110694 95007278 ~ 95013804 (+)
hal hal coding upstream 119340 94978217 ~ 95005158 (+)
LOC110500336 LOC106561679 coding upstream 168210 94890338 ~ 94959350 (+)
LOC110502438 LOC106561685 coding downstream 7961 95148916 ~ 95177761 (+)
LOC110500385 LOC106561686 coding downstream 43941 95184896 ~ 95214670 (+)
LOC118944165 NA coding downstream 62482 95203437 ~ 95203568 (+)
LOC110500415 LOC106561689 coding downstream 80268 95221223 ~ 95261034 (+)
LOC110502458 LOC106561691 coding downstream 155666 95296621 ~ 95359874 (+)
G207106 NA non-coding upstream 15679 95108199 ~ 95108819 (+)
G207103 NA non-coding upstream 23119 95101098 ~ 95101379 (+)
G206887 NA non-coding upstream 28623 95095223 ~ 95095875 (+)
G207101 NA non-coding upstream 29673 95094391 ~ 95094825 (+)
G207099 NA non-coding upstream 38392 95085838 ~ 95086106 (+)
G207115 NA non-coding downstream 1393 95142348 ~ 95142704 (+)
G207128 NA non-coding downstream 13738 95154693 ~ 95157417 (+)
G207146 NA non-coding downstream 63059 95204014 ~ 95204824 (+)
G207165 NA non-coding downstream 106685 95247640 ~ 95248106 (+)
G206926 NA other upstream 418250 94705946 ~ 94706248 (+)
G206908 NA other upstream 492231 94631829 ~ 94632267 (+)
G206850 NA other upstream 562274 94557169 ~ 94562224 (+)
LOC110500139 LOC106561672 other upstream 686816 94391364 ~ 94437682 (+)
G206389 LOC106561642 other upstream 1022626 94100979 ~ 94101872 (+)
G208404 NA other downstream 1086838 96227793 ~ 96228463 (+)
G208836 NA other downstream 1471474 96612429 ~ 96613459 (+)
G209586 NA other downstream 2345521 97486476 ~ 97486772 (+)
G209591 NA other downstream 2477662 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 2557156 97695939 ~ 97711108 (+)

Expression


Co-expression Network