LOC110500533 (LOC106561700)


Basic Information

Item Value
gene id LOC110500533
gene name LOC106561700
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96034220 ~ 96043570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577940.2
TAAGAGGCCGGGCATGAACAGCTGTTGTGCAGggcgggtgggtgggtgggttcaGAGGAGGGGCTGGGGGTATGTTCCGTCCTGGTCTAGTTCTATTCTACCATATTTGTCGGTGGACTCCCAGCATAAGATGACTCTCCAGTGGACTGTGGTGGCTATCTTCCTTTATGTGGAGATAGCTGTCATTCTGATCCTTTGTCTGCCTTTTATATCTGCCAAGAGATGGCGATCACTGTTCAACCTGAGTATATGGAACTGGTTCGCTCCGTATTGGAACAGGGGATTCTTTACCATGATACTCATCCTCATCATTCTCTTCTGTGATGCTCTGAGAGAGGTGAGGAAGTACTCCAATGCAGAGCCCATGGGAGAAGCCAAGCTGAACCCCAACCTGTTTGACCACCTCCACATGAAGCTGTTCAGAGCCCAGAGGAACCTCTACATCTCTggcttctccctcttcctctggcTTGTGATGCGGCGTGTGGTGACTCTGATAAACCACGTGGCCGTCGCTACGGTAACAGGGACCAGCCTGCAAACCCAGGCGGAGAGCGCCAATCAGGCAGCCAAGAAGTACCAGGAGGACAACCTGCTTCTGAAACAGGCTCTGCTGGATGAGGAGAAAAACACAACTGCAGGCAAACGGCTACTGAGGAAGGAGGCAGAGAAGTTGATGGAGGAACTGAAGACTGCAGAGGATGCTGTGCGTAAGTCTAATGCTGAGGTGGAGGCCATGAAGAGGCAGGCTAACGGTCTGACAAAGGAGTATGACAGACTCTTGACAAAGCACAACGAACTACagAATCTTCAGGCTGGAGCTGGAGACAAGAAGGAGCAATAAGGACTAGATCCAAATCGTTGATCCAGATGACTAGTGTCAAAGACAGAAGGTAGCCAGCCACAGCTGTTATGACTTCACATGGAGACCAGCTTTTCAGCCGAGCAACTCTTCATTCATCTTTGTCTtatgtatactgtactgtgcATGGGAAAAGGTGCAGTTATTCAACACTTGTTATTCAATGTTTCCacattgtatttgtattgtaacTAAGATAGGGAGCTAAAATTGCGTCATGTTTGAAGAAGGAACCGAGGATTTTTGCGTCTGTAAACGTATAGTCTTAAAATTCCTTCTCTGGAGCTTGTGTAATGTCCTTGGTTAATTGCTTTGCCGTTTTAAGTCATAGTACAGAGTACATTAGTACTTTAAAAGTATAATACTTGTGTCGTATATACTCAAAGTACATTATGCTAATATGCAGAGCTTTCGGCTTATGAAATGCAACATCCTGTTTTACATCTGTATCCAGGGGGCAAAATGGGTTGAAATGATGTCACAGTTTACAAGCAGAACTGGTTACGTGGAGGGTATACCCTCAGATCAACTGTGAATATGTTTTTGCTGTGTACCATGAAGTGGCATGATCCTCTTGTGTTCAATGATTAAAATACAAACATTTGAACAAATCTGA

Function

NR:

description
B-cell receptor-associated protein 29-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577940.2 True 1478 mRNA 0.46 8 96034220 96043570

Neighbor

gene id symbol gene type direction distance location
LOC110500522 gpr22 coding upstream 23016 95993206 ~ 96011204 (+)
LOC118936882 NA coding upstream 146106 95885587 ~ 95888114 (+)
LOC110500485 hbp1 coding upstream 271077 95750879 ~ 95763143 (+)
LOC110500475 prkar2b coding upstream 287004 95731857 ~ 95747216 (+)
LOC110502494 cdhr3 coding upstream 335480 95688561 ~ 95698740 (+)
LOC110500557 LOC106561743 coding downstream 927821 96971391 ~ 97028188 (+)
LOC110500585 LOC106561739 coding downstream 1038365 97081935 ~ 97085041 (+)
LOC110500594 LOC106561738 coding downstream 1042359 97085929 ~ 97087755 (+)
LOC110500611 LOC106561734 coding downstream 1485137 97528707 ~ 97596323 (+)
LOC110533938 NA coding downstream 1561578 97605148 ~ 97606655 (+)
G208255 NA non-coding upstream 1079 96032927 ~ 96033141 (+)
G208244 NA non-coding upstream 34866 95998961 ~ 95999354 (+)
G208232 NA non-coding upstream 54737 95979156 ~ 95979483 (+)
G208227 NA non-coding upstream 60368 95973628 ~ 95973852 (+)
G208257 NA non-coding downstream 1158 96044728 ~ 96045086 (+)
G208262 NA non-coding downstream 1641 96045211 ~ 96046999 (+)
G208263 LOC106561698 non-coding downstream 4745 96048315 ~ 96052238 (+)
G208267 NA non-coding downstream 14432 96058002 ~ 96058230 (+)
G208268 NA non-coding downstream 16559 96060129 ~ 96060389 (+)
G206926 NA other upstream 1327972 94705946 ~ 94706248 (+)
G206908 NA other upstream 1401953 94631829 ~ 94632267 (+)
G206850 NA other upstream 1471996 94557169 ~ 94562224 (+)
LOC110500139 LOC106561672 other upstream 1596538 94391364 ~ 94437682 (+)
G206389 LOC106561642 other upstream 1932348 94100979 ~ 94101872 (+)
G208404 NA other downstream 184223 96227793 ~ 96228463 (+)
G208836 NA other downstream 568859 96612429 ~ 96613459 (+)
G209586 NA other downstream 1442906 97486476 ~ 97486772 (+)
G209591 NA other downstream 1575047 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 1654541 97695939 ~ 97711108 (+)

Expression


Co-expression Network