LOC110500557 (LOC106561743)


Basic Information

Item Value
gene id LOC110500557
gene name LOC106561743
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96971391 ~ 97028188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960132.1
GGTGAGACCTGGGTCAGGGGGCTTGAGGACTCTGCTGGCTGGCGGACAATGAAGAAGAACAAGGCCTCCACCTCCAGAAGGTCAGAGATCCAGAACATCTACCAGTGCTACTCCTCCGGAAGGAATACTCTGGCCGCCTCCGCTCTCCTCAGGTTCCTACACATGGAGCAGATGGAGGCAGCAGCCAATCAGGAGACAGCGGAGGGCTTGATTGACAGATATGAGATTGAGGAGACAGCTAGAGAGAACAGAAGCATGACATTCGAGGGATTCTACAGATACATGGAGTCTAAAGACTGTagtgtgtttgaccagatacacacGTCTGTGTACCAGGATATGGACCAGCCTCTGTGTCACTACTTCATCTCGTCTTCTCACAACACTTACCTCACTGGGGACCAGCTGGTCGGCAAGAGCACCCTGGATGCCTATGTCAGTGCGCTGAGGAGAGGTTGTCGTTGTCTGGAGATTGACTGCTGGGATGGTCCTAGTGCAGAGCCTATAGTCTACCATGGTCACACTCTGACCAGCAAGATCCTGTTCAAGGACGTCATCACTACCGTGGGACAGCATGCCTTTGAGGTGTCTCCGTACCCAGTGATCCTGTCCCTGGAGAACCACTGTACCCCGACTCAACAGGATGTCATGGCCCAGTACCTCACCTCCATCCTGGGGGAAAAACTGCTGGCCACCAGCCTGGACCTCACCAATCAGCCTGGACAACTGCCCAGCCCTAACAGGAAGAAGGCAGCAGTAGTTGCTGAGTCTCTATCTAACCTGGTGGTCTACACCAAGTCAGTGAAGTTCCACAGCTTCAGCCATGCCAGAGAACACCAGCAGTACTATGAGAATACCTCTCTGGGGGAGAAAAAGGCACACAAGCTGGTCAAGACCTCAGCTCCAGATTTCATCCAGCACAACATGGTGTTCATCACCAGGATCTACCCAGCAGCCTCTAGAACCCTGTCCTCCAACTACAACCCTCAGGGGTTCTGGAATGTGGGCTCACAGATGGTGGCTCTGAACTTCCAGTCGTTGGGCCTGCCCATGGACCTGAACAACGGGCGTTTCCAGGACAACGGTGGCTGTGGTTACGTCCTCAAACCCCTCTTCCTCAGAACCAATCAATGGGGCTTTAATCCAAACAGTTACCGTCACAACCTGAAGCCAGCACACCTACTGCTGAAGGTTATCAGTGGCTCCAACCTGCCTGTTCCGCGGAGCGGCAAGGCCCTGGACCCCTTCGTACGCGTGGAGATCCACAGTGTCCACTCAGACTCCTGcaggagacacacagacactgtcaGACACAACTCTCTGAGCCCTCGTTGGGACTCGGCCATGAACTTCACCATCTCTGTCCCTGACCTCAGCCTCATCCGCTTCACTGTAAGAGACCAGACAGGACTCACCTCTGAGTTTATAGGACAGTACACCATCCCCTTCATCAGCATGAAGAAAGGAAATGTAGAGTTGAATCTGGGGTCCACCGTCTGCAACACAACAGTTAAGATACGATGCGTAACATTTTCCTCTAGGGGGTGCTCTTGAGACAAAAAGGTTCCCCTGCCTAAATGGACAGAAATACTGCCCAGAAACTTCCTCATTGAACACACAGCCCCCCCACCCCAAACCCTTGCAAAATGATGTCACCCTATCATTTTAGGTCATCAATTGGTAGATTTAAAACATAAAGAAGCGTAACATTTTATATTTGAATCATTTAGCATACGCTCTTCTCTAGAGCGACTtataggagcaattagggtttgcgtgccttgctcaagggcacatcggcagatctTTCAattagtcggctcggggattcgaaccagcaaccttttggtcacTGTCTCAATGCTAGACTAGCTGCCGCTCGTAAAGGAGTGGTGCTTAAAGAAACAGGACATTACCTCTTTCTGATTTCACAGAGTTGGGAGTCCTGGTCTTGGGTCCATCCAGAAACAAACAGCACACATACTCATTCTGTAGACGGCACAATTAAATATGCTTTAGACCATGGGTTCAGTTCATGGGATTCAAACTGTGGAGATCAAACCATGACAGCCTTTTCCGTGACTAGAATAAGAAGACGAAttagaagaggaggaagaaggagaggaggaagaagaggagaaggaggactaGAACTTACGCCTTTACAAGGTCCTTCGAACAGTTCCTTCAGATACTTATTCAGCAGGGACATTTTCCTGCCTGGAGTGAACGACATCTTGAACCATTTGGGGAATCTAACCCAATAATGAAAAGAGCATGAATAAAATAGGAATTACATTTGATTGAATGTAATTCACATGAAATGGGACAAACCTATGTGTGTCAAGGAGCGAGTAGACGGTGTCATTCAACAGTATAGTAGCTCAGACTCACTGT

Function

NR:

description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1-like

GO:      GO:0044763

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960132.1 True 2397 mRNA 0.50 10 96971391 97028188

Neighbor

gene id symbol gene type direction distance location
LOC110500533 LOC106561700 coding upstream 927821 96034220 ~ 96043570 (+)
LOC110500522 gpr22 coding upstream 960187 95993206 ~ 96011204 (+)
LOC118936882 NA coding upstream 1083277 95885587 ~ 95888114 (+)
LOC110500485 hbp1 coding upstream 1208248 95750879 ~ 95763143 (+)
LOC110500475 prkar2b coding upstream 1224175 95731857 ~ 95747216 (+)
LOC110500585 LOC106561739 coding downstream 53747 97081935 ~ 97085041 (+)
LOC110500594 LOC106561738 coding downstream 57741 97085929 ~ 97087755 (+)
LOC110500611 LOC106561734 coding downstream 500519 97528707 ~ 97596323 (+)
LOC110533938 NA coding downstream 576960 97605148 ~ 97606655 (+)
LOC118944222 NA coding downstream 592369 97620557 ~ 97620665 (+)
G208975 NA non-coding upstream 92438 96877530 ~ 96878953 (+)
G208912 NA non-coding upstream 197388 96773210 ~ 96774003 (+)
G208898 NA non-coding upstream 228622 96742261 ~ 96742769 (+)
G208855 NA non-coding upstream 303474 96660130 ~ 96667917 (+)
G208847 NA non-coding upstream 325357 96642983 ~ 96646034 (+)
G209042 NA non-coding downstream 399 97028587 ~ 97029023 (+)
G209046 NA non-coding downstream 9202 97037390 ~ 97039274 (+)
G209052 NA non-coding downstream 15787 97043975 ~ 97044402 (+)
G209053 NA non-coding downstream 16990 97045178 ~ 97046133 (+)
G209037 NA non-coding downstream 27162 97055350 ~ 97064668 (+)
G208836 NA other upstream 357932 96612429 ~ 96613459 (+)
G208404 NA other upstream 742928 96227793 ~ 96228463 (+)
G206926 NA other upstream 2265143 94705946 ~ 94706248 (+)
G206908 NA other upstream 2339124 94631829 ~ 94632267 (+)
G206850 NA other upstream 2409167 94557169 ~ 94562224 (+)
G209586 NA other downstream 458288 97486476 ~ 97486772 (+)
G209591 NA other downstream 590429 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 669923 97695939 ~ 97711108 (+)
G209636 NA other downstream 711873 97740061 ~ 97772765 (+)
G209759 NA other downstream 929056 97957244 ~ 97958896 (+)

Expression


Co-expression Network