LOC110500585 (LOC106561739)


Basic Information

Item Value
gene id LOC110500585
gene name LOC106561739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97081935 ~ 97085041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960137.1
agaaaaaaaggttttaaaacgGTTTCTGTTGTTATGTGTCCTAATGAACACATCCCTGCTGGGCGTGCGACTCTTCTTCAGGCACAGTCGGCCCAAGATGTGTTTCATAAACACAGGACCAGGGAAAATGGCATCGCAGAGAAAACACAGGTTGAACACTCCCCAACCCCTGGCTCCAGCAGCCTGCCTCTGTGTCCTCCTAGTCCTAACTGTGGCAGCCACGGGCAGTTATATTCCTAGTACCAGTCTGCTGTGTAACTTCTGCCCTCTACAGCACAAAGGAAGgTCCTGCAGTAACGATTCCACCACTGAGTGTCTCCCGCAAGAGCGCTGTGGTACTAGCAGTGGGCGTTTCGGTTCCACTCACATCCTGTCTGCACAGGGCtgcttgacccctgacctctgtaaCTCCACCCATGCCGTGACCTACCGAGGGGTCAGCTATAATGTGACATACAGGTGTTGTTGTAGGGACAAGTGTAACCAGCCTCCAGCCCCTGACACCTACATTAAGAGTCTGTTAGGAGTGACGTTGGGGCACAGTGAGAAGCCGCCTCCTTCCGCAACGGACCCTCTGCATAGATGCCCTGGAGATGAGGACGTGGCGGAGGATGAAGCCGTGGCTTCGCTACACGGAGAAAACGACATAACTTCCATCTATAaagtcctctcagatctccaggAGTGGCTAAAGAGTAGCGGCTAGGGGTCCGTCTGGAATTCAGCCATACTTGTCACTGGGGGACGGGCCTGTTAGCCACAGTCCCTGTCCCCCCACCCTCATGCAAGGGATGGGCCTGTTAGCCACAGTCCCTGTCCCCCCACCATCATGCAAGGGATGGGCCTGTTAGCCACAGTCCCTGTCCCCACCCTCATGCAAGGGATGACACTTATTCAAGTAGATGTTTTATTTCCAGTGTAAAATGTGCTTATTTATTCAATTATTTGTAATAACTGACGTAAAGTGTAATCTGTTTTTAGTGATGTTGCAATATTGACTTGTGGTAAAAGCTGTAGTTCTCAGTGTGGTAGCTGGTGAATGGCGTGAATACAGAAAGCATGTTGAAGTAACTGTCTAGTGTCTCCAGGTTTCTATGAAATATTACAATGAGTGAAATAATGTTCCTTCCAAAACAATGGGGTATTAAAGAACCAGTGCAGTGAAAAAGAAA

Function

NR:

description
uncharacterized protein LOC109884515

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960137.1 True 1172 mRNA 0.49 4 97081935 97085041

Neighbor

gene id symbol gene type direction distance location
LOC110500557 LOC106561743 coding upstream 53747 96971391 ~ 97028188 (+)
LOC110500533 LOC106561700 coding upstream 1038365 96034220 ~ 96043570 (+)
LOC110500522 gpr22 coding upstream 1070731 95993206 ~ 96011204 (+)
LOC118936882 NA coding upstream 1193821 95885587 ~ 95888114 (+)
LOC110500485 hbp1 coding upstream 1318792 95750879 ~ 95763143 (+)
LOC110500594 LOC106561738 coding downstream 888 97085929 ~ 97087755 (+)
LOC110500611 LOC106561734 coding downstream 443666 97528707 ~ 97596323 (+)
LOC110533938 NA coding downstream 520107 97605148 ~ 97606655 (+)
LOC118944222 NA coding downstream 535516 97620557 ~ 97620665 (+)
LOC118944205 NA coding downstream 543236 97628277 ~ 97628490 (+)
G209037 NA non-coding upstream 17267 97055350 ~ 97064668 (+)
G209053 NA non-coding upstream 35802 97045178 ~ 97046133 (+)
G209052 NA non-coding upstream 37533 97043975 ~ 97044402 (+)
G209046 NA non-coding upstream 42661 97037390 ~ 97039274 (+)
G209042 NA non-coding upstream 52912 97028587 ~ 97029023 (+)
G209072 NA non-coding downstream 2855 97087896 ~ 97091817 (+)
G209088 NA non-coding downstream 23611 97108652 ~ 97109054 (+)
G209160 NA non-coding downstream 178790 97263831 ~ 97265322 (+)
G209220 NA non-coding downstream 302483 97387524 ~ 97388004 (+)
G209534 NA non-coding downstream 303128 97388169 ~ 97388441 (+)
G208836 NA other upstream 468476 96612429 ~ 96613459 (+)
G208404 NA other upstream 853472 96227793 ~ 96228463 (+)
G206926 NA other upstream 2375687 94705946 ~ 94706248 (+)
G206908 NA other upstream 2449668 94631829 ~ 94632267 (+)
G206850 NA other upstream 2519711 94557169 ~ 94562224 (+)
G209586 NA other downstream 401435 97486476 ~ 97486772 (+)
G209591 NA other downstream 533576 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 613070 97695939 ~ 97711108 (+)
G209636 NA other downstream 655020 97740061 ~ 97772765 (+)
G209759 NA other downstream 872203 97957244 ~ 97958896 (+)

Expression


Co-expression Network