LOC110500594 (LOC106561738)


Basic Information

Item Value
gene id LOC110500594
gene name LOC106561738
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97085929 ~ 97087755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578027.2
CAACATTATTTGGGTGTGTGTTAACAGGACATTTTCACTGAACAGTTACTTtcaaataattatttttttttggtTCAGTCTGTCCTGATCCGAATAACAGGCGTCGGCAGTGGGTGTGGTTAATTGGTTCGAGGTTAGATGGTACCGGTTCGACCAGCAGTAAGTGTTGGGACACAGAGCAGCTCCATTGTACGCCACCTGTTGTATCCAGTTTGAAATTCCTCTCAACCCCAGAGTCGTAAGAATGGGCAGCCCCATCATGTACCGGAACAAGACCTTTGACCTCATCCTGACAGAGTGCCCTCCCGCGGAACTCTGCATGACGGGCAACGGTCGCTATGGAAACCACAGCGCCCTGTCCACCCGGGGGTGCATGGCGTCGACGGGCTGCGGTCAGATACACCCTCTCCCACTGAAAGGAACTGTTTACACCATGACGTATGCGTGCTGTGGCTATAACTACTGTAACGCAGGACGCCGTGTTGCGGTTAATTCGGTCCCCCTCGTTGCGGCGATGACTATGCTGTTATTAACGGGCCTGTAACTCACAATCCTCCTTTTTTTTAGATAGGTGCTGGTTCTTATAGAGGACGTGAGGAGTACGAGGGATTTGTTGGTTGAATAGTTTACTGCTGCAGACTCAGTCTAACCAATCGGAGGCATGCATCAACCtggagaaataataataataataattattattattattattattattattattattattattattattattacttttttctTAACCAAATACAAGATTATGCATTTGGCTCCTTTTTTTTTATACAGAGAAATTAATGTTTTTATGATtgtgaaataaatgttttatacaCTAACTGGACTGA
>XM_021578017.2
GTGTGTGTTAACAGGACATTTTCACTGAACAGTTACTTtcaaataattatttttttttggtTCAGTCTGTCCTGATCCGAATAACAGGCGTCGGCAGTGGGTGTGGTTAATTGGTTCGAGGTTAGATGGTACCGGTTCGACCAGCAGTAAGTGTTGGGACACAGAGCAGCTCCATTGTACGCCACCTGTTGTATCCAGTTTGAAATTCCTCTCAACCCCAGAGTCGTAAGAATGGGCAGACGTCTATTCTCTCTCAGGCCCCAGATGTTCCCGTCTCTATCTGCCATCCTGTGTTTGTCCCTGCTCCTCCCAGCACTCCACTGTAACAACAACCTGCTGTGTTACTACAGCCCCATCATGTACCGGAACAAGACCTTTGACCTCATCCTGACAGAGTGCCCTCCCGCGGAACTCTGCATGACGGGCAACGGTCGCTATGGAAACCACAGCGCCCTGTCCACCCGGGGGTGCATGGCGTCGACGGGCTGCGGTCAGATACACCCTCTCCCACTGAAAGGAACTGTTTACACCATGACGTATGCGTGCTGTGGCTATAACTACTGTAACGCAGGACGCCGTGTTGCGGTTAATTCGGTCCCCCTCGTTGCGGCGATGACTATGCTGTTATTAACGGGCCTGTAACTCACAATCCTCCTTTTTTTTAGATAGGTGCTGGTTCTTATAGAGGACGTGAGGAGTACGAGGGATTTGTTGGTTGAATAGTTTACTGCTGCAGACTCAGTCTAACCAATCGGAGGCATGCATCAACCtggagaaataataataataataattattattattattattattattattattattattattattattattacttttttctTAACCAAATACAAGATTATGCATTTGGCTCCTTTTTTTTTATACAGAGAAATTAATGTTTTTATGATtgtgaaataaatgttttatacaCTAACTGGACTGA

Function

NR:

description
sperm acrosome membrane-associated protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578027.2 False 854 mRNA 0.43 2 97085929 97087755
XM_021578017.2 True 952 mRNA 0.44 2 97085942 97087755

Neighbor

gene id symbol gene type direction distance location
LOC110500585 LOC106561739 coding upstream 888 97081935 ~ 97085041 (+)
LOC110500557 LOC106561743 coding upstream 57741 96971391 ~ 97028188 (+)
LOC110500533 LOC106561700 coding upstream 1042359 96034220 ~ 96043570 (+)
LOC110500522 gpr22 coding upstream 1074725 95993206 ~ 96011204 (+)
LOC118936882 NA coding upstream 1197815 95885587 ~ 95888114 (+)
LOC110500611 LOC106561734 coding downstream 440952 97528707 ~ 97596323 (+)
LOC110533938 NA coding downstream 517393 97605148 ~ 97606655 (+)
LOC118944222 NA coding downstream 532802 97620557 ~ 97620665 (+)
LOC118944205 NA coding downstream 540522 97628277 ~ 97628490 (+)
LOC110512361 LOC106561728 coding downstream 545886 97633641 ~ 97676623 (+)
G209037 NA non-coding upstream 21261 97055350 ~ 97064668 (+)
G209053 NA non-coding upstream 39796 97045178 ~ 97046133 (+)
G209052 NA non-coding upstream 41527 97043975 ~ 97044402 (+)
G209046 NA non-coding upstream 46655 97037390 ~ 97039274 (+)
G209042 NA non-coding upstream 56906 97028587 ~ 97029023 (+)
G209072 NA non-coding downstream 141 97087896 ~ 97091817 (+)
G209088 NA non-coding downstream 20897 97108652 ~ 97109054 (+)
G209160 NA non-coding downstream 176076 97263831 ~ 97265322 (+)
G209220 NA non-coding downstream 299769 97387524 ~ 97388004 (+)
G209534 NA non-coding downstream 300414 97388169 ~ 97388441 (+)
G208836 NA other upstream 472470 96612429 ~ 96613459 (+)
G208404 NA other upstream 857466 96227793 ~ 96228463 (+)
G206926 NA other upstream 2379681 94705946 ~ 94706248 (+)
G206908 NA other upstream 2453662 94631829 ~ 94632267 (+)
G206850 NA other upstream 2523705 94557169 ~ 94562224 (+)
G209586 NA other downstream 398721 97486476 ~ 97486772 (+)
G209591 NA other downstream 530862 97618617 ~ 97619089 (+)
LOC110500822 LOC106561728 other downstream 610356 97695939 ~ 97711108 (+)
G209636 NA other downstream 652306 97740061 ~ 97772765 (+)
G209759 NA other downstream 869489 97957244 ~ 97958896 (+)

Expression


Co-expression Network