LOC110533938



Basic Information


Item Value
gene id LOC110533938
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97605148 ~ 97606655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_002475063.2
TGCCGTTCGGTGAAACACAGCTTCCCGTTCATTTTCAATGGAAGCAAAGCGGTGAGAAGCGGAGAAGACGGGATCGTTGGGCAACACGAACGTGGCATGGGAGTCAGTGAAAAAGTTCAATATTTCCCAACTTTATGCAAATCACCAGTCGCGACCGCTAGGCGATGACctatcatatcgagtggttcccaTGACGAATTTGACACTATGCGACCCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctaccttggcaaataaaggtgtggTTCGGGTATGAATGTCTGTGAGattctttttcagtcatatccaataccaggagtatcaaattccagtctttgtatgatgctgtgtctgcatgtatgtattacaattatacccttcaacagtttttaccaatcctggtcctgggacacattgtaactatgcaatagactagaaacatgatttaactaattaaaggctgatttgtaatttgtatatacataaatataattttaaaaacagTACACTGTAGCAGTACACTGCATACAGGTATTGTTACTTCCTATGCATCATGTAAATACTCTAAAACTGGTTGATCTCGATATCTAATTTCCTTCACCTGCATTGATCTGATAATGTCACGACATCCACCAaagttgttccctctccttgttcgggcggcgttcggttcCCATCTCataattatgttccttatttaaccctctggtttccctttctgtttGTGCGTGATTGTCTTTCGTGTGTTGGATTTCGATCCTGTTTTGTCCTTGTTTGATAACGGGATTTTTGTTACGTTCTTGGATTCAGTAAATACAGTGTTTATTTACtctta
>TU237307
GGTGAGAAGCGGAGAAGACGGGATCGTTGGGCAACACGAACGTGGCATGGGAGTCAGTGAAAAAGTTCAATATTTCCCAACTTTATGCAAATCACCAGTCGCGACCGCTAGGCGATGACctatcatatcgagtggttcccaTGACGAATTTGACACTATGCGACCCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgta
>TU237301
CCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgta
>TU237305
CCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctaccttggcaaataaaggtgtggTTCGGGTATGAATGTCTGTGAGattctttttcagtcatatccaataccaggagtatcaaa
>TU237306
CCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctaccttggcaaataaaggtgtggTTCGGGTATGAATGTCTGTGAGattctttttcagtcatatccaataccaggagtatcaaattccagtctttgtatgatgctgtgtctgcatgtatgtattacaattatacccttcaacagtttttaccaatcctggtcctgggacacattgtaa
>TU237308
CCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctaccttggcaaataaaggtgtggTTCGGGTATGAATGTCTGTGAGattctttttcagtcatatccaataccaggagtatcaaattccagtctttgtatgatgctgtgtctgcatgtatgtattacaattatacccttcaacagtttttaccaatcctggtcctgggacacattgtaactatgcaatagactagaaacatgatttaactaattaaaggctgatttgtaatttgtatatacataaatataattttaaaaacagTACACTGTAGCAGTACACTGCATACAGGTATTGTTACTTCCTATGCATCATGTAAATACTCTAAAACTGGTTGATCTCGATATCTAATTTCCTTCACCTGCATTGATCTGATAATGTCACGACATCCACCAaagttgttccctctccttgttcgggcggcgttcggttcCCATCTCataattatgttccttatttaaccctctggtttc
>TU237310
CCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctaccttggcaaataaaggtgtggTTCGGGTATGAATGTCTGTGAGattctttttcagtcatatccaataccaggagtatcaaattccagtctttgtatgatgctgtgtctgcatgtatgtattacaattatacccttcaacagtttttaccaatcctggtcctgggacacattgtaactatgcaatagactagaaacatgatttaactaattaaaggctgatttgtaatttgtatatacataaatataatt

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002475063.2 False 1348 mRNA 0.40 2 97605148 97606655
TU237307 False 677 lncRNA 0.42 2 97605198 97606034
TU237301 False 513 lncRNA 0.42 2 97605362 97606034
TU237305 False 625 lncRNA 0.41 2 97605362 97606146
TU237306 False 719 lncRNA 0.45 2 97605362 97606240
TU237308 False 1012 lncRNA 0.42 2 97605362 97606533
TU237310 True 793 lncRNA 0.39 2 97605362 97606314

Neighbor


gene id symbol gene type direction distance location
LOC110500611 LOC106561734 coding upstream 8825 97528707 ~ 97596323 (+)
LOC110500594 LOC106561738 coding upstream 517393 97085929 ~ 97087755 (+)
LOC110500585 LOC106561739 coding upstream 520107 97081935 ~ 97085041 (+)
LOC110500557 LOC106561743 coding upstream 576960 96971391 ~ 97028188 (+)
LOC110500533 LOC106561700 coding upstream 1561578 96034220 ~ 96043570 (+)
LOC118944222 NA coding downstream 13902 97620557 ~ 97620665 (+)
LOC118944205 NA coding downstream 21622 97628277 ~ 97628490 (+)
LOC110512361 LOC106561728 coding downstream 26986 97633641 ~ 97676623 (+)
LOC118944214 NA coding downstream 39760 97646415 ~ 97646513 (+)
LOC118944206 NA coding downstream 52913 97659568 ~ 97659781 (+)
G209590 NA non-coding upstream 5885 97490157 ~ 97599263 (+)
G209644 NA non-coding upstream 12893 97591424 ~ 97592255 (+)
G209619 NA non-coding upstream 38883 97562329 ~ 97566265 (+)
G209617 NA non-coding upstream 44192 97560112 ~ 97560956 (+)
G209611 NA non-coding upstream 66467 97537589 ~ 97538681 (+)
G209591 NA non-coding downstream 12203 97618617 ~ 97619089 (+)
G209648 NA non-coding downstream 13137 97619792 ~ 97681203 (+)
G209651 NA non-coding downstream 31053 97637708 ~ 97708658 (+)
G209652 NA non-coding downstream 31469 97638124 ~ 97674173 (+)
G209627 NA non-coding downstream 34122 97640777 ~ 97641375 (+)
G209586 NA other upstream 118376 97486476 ~ 97486772 (+)
G208836 NA other upstream 991689 96612429 ~ 96613459 (+)
G208404 NA other upstream 1376685 96227793 ~ 96228463 (+)
G206926 NA other upstream 2898900 94705946 ~ 94706248 (+)
G206908 NA other upstream 2972881 94631829 ~ 94632267 (+)
LOC110500822 LOC106561728 other downstream 91456 97695939 ~ 97711108 (+)
G209636 NA other downstream 133406 97740061 ~ 97772765 (+)
G209759 NA other downstream 350589 97957244 ~ 97958896 (+)
G210408 NA other downstream 1090513 98697168 ~ 98700392 (+)

Expression



Co-expression Network