LOC118944190


Basic Information

Item Value
gene id LOC118944190
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97621775 ~ 97675000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944190
aaaacttttccaaaagaaaagaaaaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT
>TU237645
aaataataataaacccACTAACCTTTTCTTGTTTCTGTTTTTCACTTAGTAAGACTGTGGGAGTTGCTGACTTTCTTCAAGTCCTCTACCTCCACTGTAACATAAGAGATGCACAGTTAAAACAGTATTTCATATAATACAGGAACAGCCCCACTGACCGTTGAGATGCATGACCAATAACATCGGTTACTTTTCAAACGGTATATTATTAAATCAATACTTACATGAGAGACAGAGGTCTCGAAACAAGGACTCTAGGAAGCCGGAATAGTGTATTGAAGTCTCAAAAGGTGATTTCTTGTCTTAACAACTTTTCAAACTCTGTGAACTCATCTTTAGAAGACGGGCTTATGGCATCAATTCCTTTTACGTTGTTGACGACACCTGATTTGAGAAGGAAAAAAATGATTTGAGCACCAATGATATGAAGCTTTCCACAGGCAACTGGTGTTGACAATGTCTAAAACTCTTGATGCTTAAACCAGACATTTTGCAATATAAATGGCAGATTCTCTGTAAAGCTTTCTATGAATctgtaatacagtgccttgcgaaagtattcggcccccttgaactttgcaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCTTCCGTTGTAAATATAAATTGGACGAAGTTAACCGGATGTTAGTTTTATTAGAATCATTACGTTTGAGCAAGTCTGTCAATGATGCCTAGAAAGTGGTGAAGCCACTCGGCCCTGACGCTTTTATGCCGTTTGTATGTGTATAAAATGATGTACAAAAATACAGATGAGCTGTTTTCAAAGGAAATGCAACAAAACTTCCAGAAAACACCTGTTCTTACTTGCACCAACGAA
>TU237646
CTCGAAACAAGGACTCTAGGAAGCCGGAATAGTGTATTGACGTCTCAAAAGGTGATTTCTTGTCTTAACAACTTTTCAAACTCTGTGAACTCATCTTTAGAAGACGGGCTTATGGCATCAATTCCTTTTACGTTGTTGACGACACCTGATTTGAGAAGGAAAAAAATGATTTGAGCACCAATGATATGAAGCTTTCCACAGGCAACTGGTGTTGACAATGTCTAAAACTCTTGATGCTTAAACCAGACATTTTGCAATATAAATGGCAGATTCTCTGTAAAGCTTTCTATGAATctgtaatacagtgccttgcgaaagtattcggcccccttgaactttgcaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCTTCCGTTGTAAATATAAATTGGACGAAGTTAACCGGATGTTAGTTTTATTAGAATCATTACGTTTGAGCAAGTCTGTCAATGATGCCTAGAAAGTGGTGAAGCCACTCGGCCCTGACGCTTTTATGCCGTTTGTATGTGTATAAAATGATGTACAAAAATACAGATGAGCTGTTTTCAAAGGAAATGCAACAAAACTTCCAGAAAACACCTGTTCTTACTTGCACCAACGAA

Function

NR:

description
LOC569167 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944190 False 179 mRNA 0.43 1 97622006 97622184
TU237645 False 966 lncRNA 0.39 2 97621775 97639609
TU237646 True 727 lncRNA 0.40 3 97621775 97675000

Neighbor

gene id symbol gene type direction distance location
LOC118937309 NA coding downstream 125508 97494344 ~ 97496498 (-)
LOC110502515 reln coding downstream 234053 97089207 ~ 97387953 (-)
pik3c2g LOC106561742 coding downstream 544106 97019591 ~ 97077900 (-)
LOC110500541 LOC106561741 coding downstream 724933 96647130 ~ 96897073 (-)
LOC110500576 NA coding downstream 981602 96633841 ~ 96640404 (-)
LOC118944213 NA coding upstream 3597 97625781 ~ 97625897 (-)
LOC118944196 NA coding upstream 25677 97647861 ~ 97648048 (-)
LOC118943865 LOC106593246 coding upstream 30022 97626323 ~ 97690421 (-)
LOC118943862 NA coding upstream 32967 97655151 ~ 97660464 (-)
LOC118944194 NA coding upstream 60754 97682938 ~ 97683118 (-)
G209858 NA non-coding downstream 3982 97617666 ~ 97618024 (-)
G209875 NA non-coding downstream 9903 97609516 ~ 97612103 (-)
G209883 NA non-coding downstream 17629 97604157 ~ 97604377 (-)
G209881 NA non-coding downstream 22409 97599359 ~ 97599597 (-)
G209874 NA non-coding downstream 22873 97595728 ~ 97599133 (-)
G209885 NA non-coding upstream 10617 97632801 ~ 97669516 (-)
LOC118943869 NA non-coding upstream 13952 97636136 ~ 97691714 (-)
G209886 NA non-coding upstream 15467 97637651 ~ 97673250 (-)
G209850 NA non-coding upstream 17703 97639887 ~ 97676568 (-)
G209841 NA other downstream 2794 97618859 ~ 97619212 (-)
G209802 NA other downstream 119612 97501172 ~ 97502394 (-)
G209560 NA other downstream 204818 97416821 ~ 97417188 (-)
G208658 NA other downstream 1199782 96421866 ~ 96422224 (-)
G208472 NA other downstream 1487534 96134077 ~ 96134472 (-)
LOC118936884 NA other upstream 522136 98127948 ~ 98145517 (-)
LOC118943885 LOC106561728 other upstream 1296264 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 1320290 98936783 ~ 98944041 (-)
G210765 NA other upstream 1403548 99025732 ~ 99026118 (-)
G211127 NA other upstream 1501049 99123233 ~ 99123658 (-)
LOC118944207 NA coding upstream 42740 97717740 ~ 97717837 (-)
LOC118944209 NA coding upstream 44674 97719674 ~ 97719773 (-)
LOC118943868 NA coding upstream 46992 97699305 ~ 97723186 (-)
G209891 NA non-coding upstream 5551 97680551 ~ 97681121 (-)
G209845 NA non-coding upstream 34804 97709804 ~ 97746811 (-)
G209893 NA non-coding upstream 39191 97714191 ~ 97750984 (-)
G209844 NA non-coding upstream 51939 97726939 ~ 97771450 (-)

Expression


Co-expression Network