LOC110500822 (LOC106561728)


Basic Information

Item Value
gene id LOC110500822
gene name LOC106561728
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97695939 ~ 97711108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960262.1
tgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggatggtgggtgggtgggtccaTTCTAGCCAATAAGAGGGCAACAATAGACACAATTCTGCATATAAATtgttttagaaaaaaaaaaaagtgtccgtGATGTCATGTGTCCTACTTTTATATATCAGTACACTCAGAAACACCTAAGCACGAGTGGGACTGGGGAGGAGATTAACATTTAGTTTTTCCCCCCTAGAACCACACAaaccacagctgattcaaataataagAGCTTGATGATGAATTTATTATTTTAAGTCAGCTGTGTAGCGCTGGGGGCAAAAAAACTAAACGTTCAACCCTTGGGATCCCCAGGACCCAGTTTGGAAAAAGGCCGCTattggacagacacttcaaaacgtggcctgctataggacagacacttcaaaacgtggcctgctattggacagacacttcaaaacgcgacctgctataggacagacacttcaaaacgcgacctgctataggacagacacttcaaaacgcgaCCTATCTGTTTCTACACGTACTACTGCACGTCTGAGCTCCAGAAGCCCAGGCCACTTTGGAGAATTTAAACTACGAATGAAACACAGAACGCGTATTGGAATTGTTTAGTAAACCAGATGAAGAAATAATTGAAAGGTTAGAGTAGACCTATGTTCAGAGACTAACTTCCACAATCTATGTTAAAATGGTGAGAGGCCAGTATGCTTTTAACCCCTTGGGTGCCTTACAATCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATCAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGACGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCagcagtaggtcacatgaccaacaCATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGTTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAAGAGATGAACCGAATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCAGAGTTTGAAAAGTTGTTAAAAGACAAGAAATCACCTTTTGAGACTTCAATACACTATTCCAGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCCGCCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTGCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa
>TU237386
CAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGACGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCagcagtaggtcacatgaccaacaCATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGTTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAAGAGATGAACCGAATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTAAGAAGGACAGGACCTCAGTTGGAccaggtatttttttttttaggtctgaCC

Function

NR:

description
peptidyl-prolyl cis-trans isomerase CYP95-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960262.1 False 3891 mRNA 0.48 7 97695939 97711108
TU237386 True 1213 TUCP 0.56 3 97698111 97699776

Neighbor

gene id symbol gene type direction distance location
LOC118944201 NA coding upstream 4938 97690788 ~ 97691001 (+)
LOC118944223 NA coding upstream 14341 97681490 ~ 97681598 (+)
LOC110512361 LOC106561728 coding upstream 19316 97633641 ~ 97676623 (+)
LOC118944206 NA coding upstream 36158 97659568 ~ 97659781 (+)
LOC118944214 NA coding upstream 49426 97646415 ~ 97646513 (+)
LOC118944224 NA coding downstream 5177 97716285 ~ 97716393 (+)
LOC118944202 NA coding downstream 11147 97722255 ~ 97722468 (+)
LOC110512528 LOC106561728 coding downstream 21087 97732195 ~ 97746816 (+)
LOC118944218 NA coding downstream 43066 97754174 ~ 97754272 (+)
LOC118944204 NA coding downstream 49037 97759785 ~ 97761071 (+)
G209660 NA non-coding upstream 7403 97655167 ~ 97688536 (+)
G209648 NA non-coding upstream 14736 97619792 ~ 97681203 (+)
G209656 NA non-coding upstream 15789 97644207 ~ 97680150 (+)
G209652 NA non-coding upstream 21766 97638124 ~ 97674173 (+)
G209658 NA non-coding upstream 42821 97648941 ~ 97653118 (+)
G209667 NA non-coding downstream 4000 97715108 ~ 97753268 (+)
G209668 NA non-coding downstream 5692 97716800 ~ 97755407 (+)
G209670 NA non-coding downstream 13903 97725011 ~ 97763227 (+)
G209680 NA non-coding downstream 76283 97787391 ~ 97787596 (+)
G209591 NA other upstream 76850 97618617 ~ 97619089 (+)
G209586 NA other upstream 209167 97486476 ~ 97486772 (+)
G208836 NA other upstream 1082480 96612429 ~ 96613459 (+)
G208404 NA other upstream 1467476 96227793 ~ 96228463 (+)
G206926 NA other upstream 2989691 94705946 ~ 94706248 (+)
G209636 NA other downstream 28953 97740061 ~ 97772765 (+)
G209759 NA other downstream 246136 97957244 ~ 97958896 (+)
G210408 NA other downstream 986060 98697168 ~ 98700392 (+)
LOC110510476 LOC106561728 other downstream 1186416 98897524 ~ 98944948 (+)
G210484 NA other downstream 1191680 98902788 ~ 98926406 (+)
G209665 NA non-coding downstream 37 97699813 ~ 97700168 (+)
G209666 NA non-coding downstream 3044 97702820 ~ 97706607 (+)
G209629 NA non-coding downstream 9608 97709384 ~ 97745608 (+)

Expression


Co-expression Network