LOC118943868


Basic Information

Item Value
gene id LOC118943868
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97699305 ~ 97723186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039176.1
gggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacatcttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttgtaATATTTTTCGGTGTTTTCAGTGACCGCAATtgccgggcgatttctcagccaaacgtgaagaaaaaacggagctatttcgcctacaaaaataatatttttggaaaaaaggaacattttctATCTAACTGGGAGTTTCCTTAGTggaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATACGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGgcgtattgtattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACTCACCATT
>TU237648
CTCgggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacatcttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttgtaATATTTTTCGGTGTTTTCAGTGACCGCAATtgccgggcgatttctcagccaaacgtgaagaaaaaacggagctatttcgcctacaaaaataatatttttggaaaaaaggaacattttctATCTAACTGGGAGTTTCCTTAGTggaaacatccgaagctcatcaaagCTCCCTCTCGGCCTCTCTGATGCTGACGCAAGCGTGGTCCCGGTGCGACCCGATCACGGTACACacggtacagacacacacactacactgacggCAG
>TU237651
CTCgggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacatcttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttgtaATATTTTTCGGTGTTTTCAGTGACCGCAATtgccgggcgatttctcagccaaacgtgaagaaaaaacggagctatttcgcctacaaaaataatatttttggaaaaaaggaacattttctATCTAACTGGGAGTTTCCTTAGTggaaacatccgaagctcatcaaagGAACGAGGTGAGTCCTTATCAAACTTGCCTCCTCCTGCTCTTCCGAATCAACTCCGCCCC
>TU237649
CTCgggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacatcttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttgtaATATTTTTCGGTGTTTTCAGTGACCGCAATtgccgggcgatttctcagccaaacgtgaagaaaaaacggagctatttcgcctacaaaaataatatttttggaaaaaaggaacattttctATCTAACTGGGAGTTTCCTTAGTggaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039176.1 False 799 mRNA 0.41 2 97721992 97723183
TU237648 False 424 lncRNA 0.44 2 97699305 97723186
TU237651 False 387 lncRNA 0.40 2 97715948 97723186
TU237649 True 374 lncRNA 0.40 2 97722420 97723186

Neighbor

gene id symbol gene type direction distance location
LOC118944209 NA coding downstream 2219 97719674 ~ 97719773 (-)
LOC118944207 NA coding downstream 4155 97717740 ~ 97717837 (-)
LOC118943869 NA coding downstream 30549 97636136 ~ 97691714 (-)
LOC118943865 LOC106593246 coding downstream 32160 97626323 ~ 97690421 (-)
LOC118944208 NA coding upstream 32447 97755630 ~ 97755727 (-)
LOC118944211 NA coding upstream 34381 97757564 ~ 97757663 (-)
LOC118943870 NA coding upstream 36699 97759882 ~ 97761086 (-)
LOC118936884 NA coding upstream 404765 98127948 ~ 98145517 (-)
LOC110500713 LOC106561713 coding upstream 589840 98313023 ~ 98352485 (-)
G209860 NA non-coding downstream 32887 97652692 ~ 97689105 (-)
G209834 NA non-coding downstream 38236 97647549 ~ 97683756 (-)
G209888 NA non-coding downstream 39914 97646404 ~ 97682078 (-)
G209844 NA non-coding upstream 3756 97726939 ~ 97771450 (-)
G209851 NA non-coding upstream 41106 97764289 ~ 97769193 (-)
G209838 NA non-coding upstream 55913 97779096 ~ 97780558 (-)
G209901 NA non-coding upstream 58874 97782057 ~ 97782475 (-)
G209841 NA other downstream 102780 97618859 ~ 97619212 (-)
G209802 NA other downstream 219598 97501172 ~ 97502394 (-)
G209560 NA other downstream 304804 97416821 ~ 97417188 (-)
G208658 NA other downstream 1299768 96421866 ~ 96422224 (-)
G208472 NA other downstream 1587520 96134077 ~ 96134472 (-)
LOC118943885 LOC106561728 other upstream 1195265 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 1219291 98936783 ~ 98944041 (-)
G210765 NA other upstream 1302549 99025732 ~ 99026118 (-)
G211127 NA other upstream 1400050 99123233 ~ 99123658 (-)
LOC118944194 NA coding downstream 16187 97682938 ~ 97683118 (-)
LOC118943862 NA coding downstream 38841 97655151 ~ 97660464 (-)
LOC118944196 NA coding downstream 51257 97647861 ~ 97648048 (-)

Expression


Co-expression Network