LOC118943870


Basic Information

Item Value
gene id LOC118943870
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97759882 ~ 97761086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039179.1
tttctatctaactgggagtctccttagtgaaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATACGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGgcgtattgtattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACTCACCATT
>TU237657
ccAGAGTGACTCTCgggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacatcttgaggattgattataaacaacgttttccatgtttctgtcgatattatggagctaatttgtaatatttttcggcgttttcaGTGACCGCAATtgccgggcgatttctcagccaaacatgaagaaaaaacggagctatttctcctacaaaaataatctttttggaaaaaaggaacattttctatctaactgggagtctccttagtgaaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATACGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGgcgtattgtattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACT

Function

NR:

description
LOC569167 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039179.1 False 527 mRNA 0.44 2 97759882 97760800
TU237657 True 806 lncRNA 0.41 2 97759889 97761086

Neighbor

gene id symbol gene type direction distance location
LOC118944211 NA coding downstream 2219 97757564 ~ 97757663 (-)
LOC118944208 NA coding downstream 4155 97755630 ~ 97755727 (-)
LOC118943868 NA coding downstream 36699 97699305 ~ 97723186 (-)
LOC118944209 NA coding downstream 40109 97719674 ~ 97719773 (-)
LOC118944207 NA coding downstream 42045 97717740 ~ 97717837 (-)
LOC118936884 NA coding upstream 367148 98127948 ~ 98145517 (-)
LOC110500713 LOC106561713 coding upstream 552223 98313023 ~ 98352485 (-)
lmo2 rbtn2 coding upstream 663215 98424015 ~ 98426658 (-)
LOC110500720 LOC106561717 coding upstream 713934 98474734 ~ 98513861 (-)
edc3 LOC106561715 coding upstream 761198 98521998 ~ 98535690 (-)
G209893 NA non-coding downstream 8898 97714191 ~ 97750984 (-)
G209845 NA non-coding downstream 13071 97709804 ~ 97746811 (-)
G209860 NA non-coding downstream 70777 97652692 ~ 97689105 (-)
G209851 NA non-coding upstream 3489 97764289 ~ 97769193 (-)
G209838 NA non-coding upstream 18296 97779096 ~ 97780558 (-)
G209901 NA non-coding upstream 21257 97782057 ~ 97782475 (-)
G209902 NA non-coding upstream 21901 97782701 ~ 97782951 (-)
G209907 NA non-coding upstream 30373 97791173 ~ 97791393 (-)
G209841 NA other downstream 140670 97618859 ~ 97619212 (-)
G209802 NA other downstream 257488 97501172 ~ 97502394 (-)
G209560 NA other downstream 342694 97416821 ~ 97417188 (-)
G208658 NA other downstream 1337658 96421866 ~ 96422224 (-)
G208472 NA other downstream 1625410 96134077 ~ 96134472 (-)
LOC118943885 LOC106561728 other upstream 1157648 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 1181674 98936783 ~ 98944041 (-)
G210765 NA other upstream 1264932 99025732 ~ 99026118 (-)
G211127 NA other upstream 1362433 99123233 ~ 99123658 (-)
G209887 NA non-coding downstream 12257 97642207 ~ 97747632 (-)
LOC118943869 NA non-coding downstream 68175 97636136 ~ 97691714 (-)

Expression


Co-expression Network