XLOC_020742 (lmnb2)


Basic Information

Item Value
gene id XLOC_020742
gene name lmnb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3121086 ~ 3152357 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040910
ACACCTCCGTTTCAAAGGCAGCCAACCAGCAGTCGGACTACAAACACACGCTTTCATTGAGAAAACTCCACAAAACCACGCAAACTTCCTAACGCGCCGCCGGAAAGCCGCTGCAAGTGCGACTCGGAGGCCGCTGCTCAGTGGGACGCGAAGGAGCGTGTGTATTTTTCTCTGAGGTGAAGAAGAGGGTCTGAAGCGATCATAATTATGGCGACCGCAACCCCGAGCCGCGCGTCGGCCGCCCAGACGCCGCTGAGCCCCGCGCGGATCTCCCGCCTGCAAGAGAAAGAGGAGCTGCGGGCGCTCAACGACCGCCTGGCCGTGTACATCGACCGCGTGCGCGCGCTGGAGCTCGAGAACGACCGGCTGCAGTTTAAAGTGTCCGAGAAGGAGGAAGTCACGACCAGAGAGgtgTCTGGGATCAAGTCTCTATATGAGGCTGAACTGGCCGATGCTCGCCGTGTGCTGGACGAAACGGCTCGCGAGCGCGCTAAACTTCAGATCGAGCTGggaaaagtcaactctgagcttGAGGAGGTCACGCGCAActATAAGAAGAAGGATGGCGATCTGGCTGCGGCTCTGGTGCGCATTAAGGATCTGGAAGCGCAGTATAATAAGAACGAAGCTGCGCTGAACACGGCGCTGAGCGAGAACGCCTCTCTGAGCGCTGAACTGGCTGATCTCAAGGCTCAACTCGCCAAGGCTGAAGATGCTCATGGAGTGGCGAAGAAGCAGCTGGAGGTGGAGACTCTGATGAGGGTGGACCTGGAGAACCGCTGCCAGAGCCTGACGGAGGAGCTGGAGTTTAGGAAAAGCATGTTTGATGAGgagGTGCGCGAGACGCGGCGGCGTCATGAGAAGCGTATGGTTGAGGTGGACTCCGGCATGCAGCAGGACTATGAGTTCAAGCTGTCGCAGGCGCTGCAGGATCTGCGCAAACAACACGAGGAGCAGGTGCAGATCTACAAGGAGGAGCTCCAGCACACCTTCAAGGCCAAGcTGGATAATGCCAAGGTGTCTTCTGACCTGAATGATAAAGCGGTGCTGACGGCGCGTGAGGAGCTGCAGGAGGCTCATGTGAGGATCGAGGGTTTGAGTTATCAGCTCAGCGCCCTGCAGAAACAGGCGTCCGCCGCTGAGGAGCGCATCCGCGAGCTGGAGGGCCTGCTGTCCAGTGACCGGGACAAATACCGCCGCCAGCTGGACGCTAAAGAGCGCGAGATGGCAGAGATGAGGGAGTGCATGCAGCAGCAGCTCAACGAGTACCAGGAGCTGCTGGACGTCAAACTGGCCCTGGACATGGAGATCAACGCCTACAGGAAACTGCTGGAGGGAGAGGAGGACAGGCTCAAGCTGTCTCCCAGTCCGTCCTCAAGGGTGACGGTGTCCCGCACCACAGCGAGCAGCACCTCTGCGTCCTCACGGAGCTCTCGTGCCAAGAGGAAGCGTGTGGAGCTGGAGGAGTCATCCACCGCCGGCCCCAAAGTGCAGATCAGTCAGCAGGCTGAAGCCAGCGGCAGCGTCAGCATTGAGGAGATCGACCTCGAGGGCAAATCTGTGACCCTCAGGAACAACTCTGACAAGgatCAGTCTCTGGGCAGCTGGCGACTAAAGAGACAAATTGGAGACGGAGAGGAAATTGTCTATAAATTCAGCCCCAAGTTTGTCCTGAAGGCCGGTCAGACAGTTACGGTGTGGAGCGCTGATGCTGGCATGTCCCATAGTCCTCCTTCAGACCTGCTGTGGAAGAGCCAGAGCTCCTGGGGAACCGGAGAAAACATCCTCACCCTATTGGTCAATTCAAGCGGAGagGACGTGGCGAAGCGAACCGTCACAAAAAGCGTGATAGAAATGGAGAATGGTGACGATGAGGAGGGAGACTTTGGAGATGAAGACCTTTTCCATCAGCAGGGCGATCCAAAGACTCAAAGAGCCAGAGAATGTGCAGTGATGTGATGGAGCCGCGCACCTTTTAGTATTTCCCTTTCCCACCAGTCAGTCTTTTTGTAGAGCCACTACTTTTTGTATTCTTTGATCATGAGCGCATAACAACCCTCCCTCAATCCTTTATTTTCTACACGGACCTCATTTGTAAAGCCAGTTAATCTTGAGCTGTTTCTCAGCTCCTCAATAATAGTCTTTCCAGACAGCAAGAGTGAGggaaacatcccataatgcaacgccATCGGAGAAAAGTCAAATGACCTGAAATTAGAGAGTATTTGTGCGTGCCGGTGACTAAAGAATCTGCGTGTTCATTGGTCACTGCGGGGTTATGAATGGGTGAATTGTGTTCTGTAGTGCACTATATAGCCTGTAACTGACAGCTGTCGCTTTAGCACACCCCTTGTTTTCGCTTTGCTAACCAGATGAACAGGGTGGAAACATTTACAGGATTACTTATAAAACATTTAGGGCTCTGACACGATTTGCGGTGTTTGATTTATGCTTTACGTAGTGTTATTTGTGTTTAAAtcagtgatttcttttttttttttttttatgtcaatagACCCCATCATAACCTTAATAGCTGAAGAGTGTTCATTTGAATGTTTGCTAGCTAATGAGCCACCAGAACGGTACTTTGAGTATAGTGTCAAAAGATGGAATGGATCTGGATAAGCTACTCTATTCAGTATTTTAAAGTTTGAATATTCTGAAAACTGTTTGAATATTTAAAGGTGCGAAGTATTTTATAGTTGAGAAAGCTATTTGAATATTAAATTTGACTATtcaataaatgctttaaatattgttaatattcCAAAATCTGTCTGAATAATCGGTAAAAACTGTTTGGATATTCTATAAAAgctgtttgaatatgctaaaaccAATTTGAATATTCTAAAAACAGTTATTTGAATACTCTGAAAACATTTTGGATATTAAAGAGCTGTTTGAAAGTTGAAAAACAATTTGAATGTTGCTAAAAGTATTTGAATATTACAATTTGTTAATATTCCTAAAACAGTTTGAATATTCTAAAAGATTTTGAGTATccaaacaaataattagaatCTTAAAAAACAGTCTGAATATTCCAGAaactatttgaatatttttgttttaattttcaaaaaattatCAATCCAAATATTCTAAAAACAGTTTGATTATTAAAAAGTTTATTGTAATATTCTGAAAACATTTTGAATATTTAAGGGCTGTTTAAAAATCATTCAAGTACTAAACGTTTGACTTGAAAAacgtatttttttaataaaatctgtTAATATTCCCAAATAGCAGTTTGAATATTCTAAAACAAtttgaatattaataaaaactgtttgtatgttctaaaaaaattgaatattgctaaaattaaatataaaaaacaagttaaataataaactttgaatatttaaacttgcaataataacaaagtagtcttaatatttttaaaaatgtgaatattacAAAGTTTGAGTACTCTAAAAACAATCTGAATATTTCAGTATACAATGttaatattctaaaaaaaaactatttgaatattcaaaaaataattaaaaattctaaaaaactgtttaaataccATAAAAACAATCTTATTATTCTAAAACTGTCTGAATATTCTATTAAAACAGTTTGAATATTCAATAATTGTTGTTTCGATAATCATTAAACgctgtttgaatatgctaaaaccAATTTAAATATTCGGAAAAATTCTGAATATTCTAAAAACTATTTGAGTATTTACAAactatccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacttcctGACTATTCCATAAAAAGTTTAAATACCCTAAACccaatttgaatattttaaaaacggCTTATTTGAATACTCAGAACACTTTCCGTTTATGTGAATGTATTGCTGAATGTTAAATATGGTTGACCCTACAGCTTGATCAGTTTCGCACTCACTCTTAATTCTGACCATAATCGACACACTTTTGCAATAAGATCACATCACACGGGCAGATTAACCAAAGAAATGGACGATGGAATGAAACCAATTAGaccttttgttttttcttttgttattttcatTGCTAGCATTGATTCTAGCAAAGCACTCCAACAAAACATAAAGCCCATATTTTAGCTGAGGAATCTAGCGAGTAACCTGTGTACATCCACCCTGTTGATTCTGTCGCATTTTAAGTTTTacagtttgttagtttttttattattattattattattaaaatgtttctcaGACAATTATGCATGCTGCAAATATTTTTATacgaataaataaactgatccgTGAGTTGTCCTCTGAGCGCTAGGGTTGGTTTGTCAATTTTCACGACTGCTGCATAACAATGCAGTTTGGTTTTTAGCTACAAtcgtatatatttttgataggtTTTTTCCTCAGGATTTTTAAAAACCCTAGTGCGCAACCTACGTTTTAAATACGTTTGTGAATATATTCGAGTGCAGTGTGCACAAGCAAACAACAAAAATTGGACTGGGAAACATTTTCGTTTTGTTTTTAAGGTTATGCAGTGCGGAACTATTTTCTTATGTTAATGGGGTATCGTAATCTACATGTTTACTTATTAGGAGTTTACTTCTGATGGCTCTGAGAACGGACTGCCTCATAGTTTATCAAGAGTCAATTGAGTCAAATTTAAGCGAAATTTAGCTTGTATTTGTGTACATTTGTTACTTAGCTTCTGGCTAATAAAATCTACCttttagcttgtttttaaaacttcatgGTTTCGTTTGCCAAACACTCCACATCTGTGAATTGTTCTTACTCTCTTTAATTCATCGATTTAGTTGCGAGCACTGTTTTTTCGTGAGGAAATGACCTTCCTCGTTCTTTCAGGTTTTATTAGACCAGAGCTGTGACTAATGTAACGGATATATTGGTATATCTGATGAGAAATGATCAGTAATCTACTGTAAagtgtaaattctgccatcagaAAGCACAGAAATGTGATTCAAGGCTGCCGCAGTTGGAGCCGTAAATTGTGAACTCTGAATAAATGTGTTATGTGGGTAAAAGTGAGGACTTTTTGAAGGGCTAAAGGAGAAGGGCGCATGCCAAAAGTGTCTCATTGTGATTTGTTTTACTttctatttgtctttttttttttttgtatgcaatatccaataaatgttttacatattAA
>TCONS_00040911
CGACCGCAACCCCGAGCCGCGCGTCGGCCGCCCAGACGCCGCTGAGCCCCGCGCGGATCTCCCGCCTGCAAGAGAAAGAGGAGCTGCGGGCGCTCAACGACCGCCTGGCCGTGTACATCGACCGCGTGCGCGCGCTGGAGCTCGAGAACGACCGGCTGCAGTTTAAAGTGTCCGAGAAGGAGGAAGTCACGACCAGAGAGgtgTCTGGGATCAAGTCTCTATATGAGGCTGAACTGGCCGATGCTCGCCGTGTGCTGGACGAAACGGCTCGCGAGCGCGCTAAACTTCAGATCGAGCTGggaaaagtcaactctgagcttGAGGAGGTCACGCGCAAGTGAGCATCGCACAATAATACATCATTTTAGCCAGTCATGTGACTCAGAAATCGCCTGTTGGCTTTATTATCCCAGTCTTTTAATTACCCATAAGGCTTTAAGTCACTGGTGGTCTTTCCACTTAAGTCGGGCTTACTTAACCTGACTTTAAAT

Function

symbol description
lmnb2 Located in nuclear envelope. Human ortholog(s) of this gene implicated in partial lipodystrophy; primary autosomal recessive microcephaly; and progressive myoclonus epilepsy 9. Orthologous to human LMNB2 (lamin B2).

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005635 nuclear envelope cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-990630-13 Located in nuclear envelope. Human ortholog(s) of this gene implicated in partial lipodystrophy; primary autosomal recessive microcephaly; and progressive myoclonus epilepsy 9. Orthologous to human LMNB2 (lamin B2).

Ensembl:

ensembl_id ENSDARG00000101624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040910 False 5176 mRNA 0.41 12 3121086 3152357
TCONS_00040911 True 491 lncRNA 0.56 2 3147100 3152146

Neighbor

gene id symbol gene type direction distance location
XLOC_020741 ing5a coding downstream 28950 2949111 ~ 3092136 (-)
XLOC_020740 pigx coding downstream 183557 2931340 ~ 2937529 (-)
XLOC_020739 pak2b coding downstream 191930 2895511 ~ 2929156 (-)
XLOC_020738 NA coding downstream 228540 2889663 ~ 2892546 (-)
XLOC_020737 aqp12 coding downstream 234149 2874838 ~ 2886937 (-)
XLOC_020743 lonp1 coding upstream 8090 3160447 ~ 3182965 (-)
XLOC_020744 gpr35.1 coding upstream 100579 3252936 ~ 3261879 (-)
XLOC_020745 si:zfos-943e10.1 coding upstream 110056 3262413 ~ 3299355 (-)
XLOC_020746 tbxa2r coding upstream 184366 3336723 ~ 3344613 (-)
XLOC_020747 NA coding upstream 195156 3347513 ~ 3347884 (-)
XLOC_020736 NA non-coding downstream 293000 2814463 ~ 2828086 (-)
XLOC_020734 NA non-coding downstream 295385 2795028 ~ 2825701 (-)
XLOC_020735 NA non-coding downstream 314059 2799465 ~ 2807027 (-)
XLOC_020733 NA non-coding downstream 331548 2769742 ~ 2789538 (-)
XLOC_020749 NA non-coding upstream 588229 3740586 ~ 3741284 (-)
XLOC_020750 NA non-coding upstream 731250 3883607 ~ 3886684 (-)
XLOC_020752 CU074310.1 non-coding upstream 1159446 4311803 ~ 4313118 (-)
XLOC_020756 NA non-coding upstream 1580650 4733007 ~ 4735337 (-)

Expression


Co-expression Network