LOC110500748 (LOC106561725)


Basic Information

Item Value
gene id LOC110500748
gene name LOC106561725
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98587916 ~ 98601250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960425.1
GGCAGCAGGCGTGCTCGAAATGCGAGTGAAGGAAGGGAGCAAGATCCGAAACCTCTTGGGATTTGTAATGGCTCGTatgcagagggaggaacaggaaGTGGATGGGAGTCAGATTCAGACGATGCTGAGTGTGAAAGAGGGAGTGACAGTGGACAGTATTCAGATGGGGAAGAGGCAAGGAGAGGGAGTCATGGACATTGGCCGGAGTCAGACCCGGACCGGGCTGAGAGTGAGACAGGTGGTTTTCACTGGATCAGGAAAAGGGATCACCAAAACCATAACATGTGTTGAGATCCTGAAACGGAAACTGGGAGGACTACACCAGTTATCCAAGCTCCACTACAAGACTGTGAGTGAGGTGTGGGAGAGTCAGGAGACTGACATGACACCCGTGTCCAGGATGACTGTTCATAAGACTGTTCCTGCTATCAGTATCCTGCTCTCCAAACACCCACTGGACCCAAGTGAGCCTGGGTATCAGCCCCCAGAAACCCAGCATGATCCTAGCTACCAACCCCCAGGGTACCAGCCTCCTAGGTATCAGCCCCCAGAAACCCAGCATGATCCTAGCTACCAACCCCCAGGGTACCAGCCTCCTAGGTATCAGCCCCCAGTGACGCTATGTGACAGTGTGAAAATTCCACCTCGACCACAGCTCGAGCTCCGCAAAACACAACTGTTGTCAATACCACTGACCCAGAAAAGCCAaagccctttttggttccagagtGCCGGTACCTCTAGGTCTCAGGAGGGCAGTAGAGATGCACAGAGCTGTACGCCACACCTGTGTGCCGCCtctgagaaagagaggaaaacagcaGGAGGAGAGATACTCTACAGTCCTTGTTCATACATATTGCCTGGTCCTGAAGCCAAGAGAACCTGTATGAAGAACCACCTGTTCCCCTCGACTCCCTCAACTTGAAAGAAACTTGAGTTCCATCTACTCTGTGCTCCTGTTAGAcacaacagagaaacagaggaaagTGAGGAGACAACTGGAAGAGATTGCTTTTGAGTAAAAGTTTAGGCTCTAGAATATATTATAAAAAGTGTAGTGGGTTAAGAACAACTAGTAAACCCCTACTTTTTCGAATTATACTTCAGTAGTTTAGGAAAAATGTCTCATAAAATTATGGTAAAATGctaaataaatgtaatttatgTTATGGTAACGTGCAGCCCTCCCCCCCCGTAATTTTAGGACCTTGTGCATGCTCATGGTTAGGTCTTCAGCTGCTAGCTAACGTCCTTGAattcgtcactagttaccacagccacaaagtcataaacctcgcccatttctacaatttctcttctaaaaatctgatttgaaacctaaccacactgctagtCTTATGTCTTAgattaaattaataaaaataaaaaaaacatttttttgtttttaatattttttacgatatagccaatttCTTTCTTATTGGCTGTCTTAACTAGTGACAACCACGTTGTTGCGCCAAGTCTCCTTTAGCTGGCTGAGCCCTCATCATGTTCAGAGCCGCCGTCCGTCTTTCAGTGTCCGGGGCCCGGAGTCTGACCTGGACACGGCTTGGGTGTACAGGATAAATCTGGCCCccacaaagacatctacccataCCTAATTCAGGAGCTGCGGCCAACACTAGATGAGCTTGGTATCTCCACACCTGAAGAGCTTGGCATGGACAAATTATAAATGGGACTGCTGTTGATGTCTCTGGGAACCTTGTACTTAGTCTTTGCCTCCTTGTATAAATATGTGTGTGATATTTAATTTGGGCCTTTTGTTTGTAAAATATTGATGAACctaataaagaaatatatat
>TU238657
AAAATTCCACCTCGACCACAGCTCGAGCTCCGCAAAACACAACTGTTGTCAATACCACTGACCCAGAAAAGCCAaagccctttttggttccagagtGCCGGTACCTCTAGGTCTCAGGAGGGCAGTAGAGATGCACAGAGCTGTACGCCACACCTGTGTGCCGCCtctgagaaagagaggaaaacagcaGGAGGAGAGATACTCTACAGTCCTTGTTCATACATATTGCCTGGTCCTGAAGCCAAGAGAACCTGTATGAAGAACCACCTGTTCCCCTCGACTCCCTCAACTTGAAAGAAACTTGAGTTCCATCTACTCTGTGCTCCTGTTAGAcacaacagagaaacagaggaaagTGAGGAGACAACTGGAAGAGATTGCTTTTGAGTAAAAGTTTAGGCTCTAGAATATATTATAAAAAGTGTAGTGGGTTAAGAACAACTAGTAAACCCCTACTTTTTCGAATTATACTTCAGTAGTTTAGGAAAAATGTCTCATAAAATTATGGTAAAATGctaaataaatgtaatttatgTTATGGTAACGTGCAGCCCTCCCCCCCC

Function

NR:

description
uncharacterized protein LOC109884272

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960425.1 False 1829 mRNA 0.46 3 98587916 98601250
TU238657 True 563 lncRNA 0.44 1 98600054 98600616

Neighbor

gene id symbol gene type direction distance location
edc3 LOC106561715 coding downstream 52226 98521998 ~ 98535690 (-)
LOC110500720 LOC106561717 coding downstream 74055 98474734 ~ 98513861 (-)
lmo2 rbtn2 coding downstream 161258 98424015 ~ 98426658 (-)
LOC110500713 LOC106561713 coding downstream 235431 98313023 ~ 98352485 (-)
LOC118936884 NA coding downstream 442905 98127948 ~ 98145517 (-)
LOC110502529 LOC106584711 coding upstream 41740 98642990 ~ 98689136 (-)
LOC110500839 LOC105018309 coding upstream 91506 98692756 ~ 98723102 (-)
LOC110500636 NA coding upstream 194599 98795849 ~ 98808194 (-)
LOC110500630 NA coding upstream 201755 98803005 ~ 98808340 (-)
LOC110502520 LOC105018371 coding upstream 218531 98819781 ~ 98832865 (-)
G210599 NA non-coding downstream 5013 98582687 ~ 98582903 (-)
G210598 NA non-coding downstream 5580 98582106 ~ 98582336 (-)
G210596 NA non-coding downstream 9753 98577879 ~ 98578163 (-)
G210595 NA non-coding downstream 10318 98577391 ~ 98577598 (-)
G210594 NA non-coding downstream 10593 98577107 ~ 98577323 (-)
G210628 NA non-coding upstream 36959 98638209 ~ 98638546 (-)
G210623 NA non-coding upstream 38444 98639694 ~ 98641715 (-)
G210632 NA non-coding upstream 52311 98653561 ~ 98654490 (-)
G210638 NA non-coding upstream 72136 98673386 ~ 98678696 (-)
G210683 NA non-coding upstream 109896 98711146 ~ 98712557 (-)
G209841 NA other downstream 968704 97618859 ~ 97619212 (-)
G209802 NA other downstream 1085522 97501172 ~ 97502394 (-)
G209560 NA other downstream 1170728 97416821 ~ 97417188 (-)
G208658 NA other downstream 2165692 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 317198 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 341224 98936783 ~ 98944041 (-)
G210765 NA other upstream 424482 99025732 ~ 99026118 (-)
G211127 NA other upstream 521983 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 1014426 99615676 ~ 99619142 (-)
G210608 NA non-coding downstream 9678 98590028 ~ 98590376 (-)
G210607 NA non-coding downstream 10150 98589659 ~ 98589904 (-)
G210605 NA non-coding downstream 10965 98588600 ~ 98589089 (-)

Expression


Co-expression Network