LOC110500756 (pk)


Basic Information

Item Value
gene id LOC110500756
gene name pk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98613750 ~ 98633108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960431.1
CATCGGAGGGATACCCTATGTTCGGCTGGGGAAGTAGTCCCGGTCAGTTGGGGGGGTTATCTTTCGCCAGAGCTCGGCTGGTGGGCGCATTGGTCCCTGCAACGTTCACCCGGTAGgatTTCTCAGATACCGATCCAATCATGTCTAAAGGAAAGGATATGGGCTCTGCCTTCATCCAGACGCAGCAGCTCCACGCTGCCATGGCCGACACTTTCCTGGAGCACATGTGTCTTCTGGACATCGACTCCGAGCCAGCCGTGGCTCGCAACACCGGAATCATCTGCACCATCGGACCCGCCTCCCGATCAGTATCCATGGCCAAGGAGATGATCAAATCTGGGATGAACATTGCAAGAATGAACTTCTCTCACGGAACTCATGAGTATCATGCTGAGACCATCAAGAATGTCCGTGAAGCCACCGAGAGCTTCGGTTCCGGCACCATCGAGTACAGACCAGTGGCCATCGCTCTGGACACCAAGGGACCCGAAATCAGGACTGGACTCATCAAGGGCAGTGGCGAAGCTGAGGTCGAGCTGAAGAAGGGAGGTCACATCAAGCTGACCTTGGACGACAAGTACAAGGACAACTGTGACGAGAAGCACCTGTGGTTGGACTACAAGAACATCACCAAGATCCTGAAGGTCGGAGCTCACGTCTACATCGACGACGGCCTCATGTCCCTGAAGGTCAAGGAAGTCGGCGCTGACTTCCTGGACTGTGAGATTGAAAATGGTGGTACTCTGGGCTCTAAGAAGGGTGTGAACTTGCCCGGTGCTGCTGTGGACCTGCCCGCTGTCTCTGAGAAGGACATCCAGGATCTGCAGTTCGGTGTGGAACAGGGAGTGGACATGGTCTTCGCCTCCTTTATCCGTAAGGCAGCTGATGTACACGCCGTCAGGAAGGTGCTGGGAGAGAAGGGCAAAAACATCAAGATCATCTCCAAACTGGAGAACCACGAGGGCGTccgcagatTCGACGAGATCCTGGAGGCTAGCGATGGCATCATGGTTGCCCGCGGCGACCTGGGTATTGAGATCCCCACGGAGAAGGTGTTCATCGCCCAGAAGATGATGACCGGACGCTGCAACAGGATCGGCAAGCCCATCACCTGCGCCACACAGATGCTGGAGAGCATGATCAAGAAGCCCCGCCCTACTCGTGCTGAGGGTTCCGATGTCGCCAACGCCGTTCTGGACGGCAACGACTGCATCATGCTGAGTGGTGAGACCGCCAAGGGAGACTACCCACTTGAGGCTGTCCGCACACAGCACAAGaTTGCTCGTGAGGCAGAGGCCGCCATGTACCACAGGCAGATGTTTGAGGAAATCCGTCGTACCTCTCACCTGACCCGTGACCCCACTGAGTCCGTTGCCATTGGCGCCGTCGAGGCTTCCTTCAAGTGCTGTGCCAGTGCCATCATCGTGCTCACGAAGACTGGCAGGTCCGCCCATCTGCTGTCCAGGTACAGGCCCCGTGCCCCCATCATCGCTGTGACCCGCTGCGGCCAGACCGCCCGTCAGGCCCATCTGTACCGCGGTATCTACCCAGTGCTGTACACCAAGCCTGCCAACGATGTCTGGGCCGAGGATGTCGACCTCCGCGTCAACTTCGCCTTGGAGATGGgCAAACACCGTCACTTCTTCAAGTCTGGAGATGTCATCATTGTCGTGACCGGATGGCGTCCAGGCCCTGGTTACACAAACACCATGCGTGTTGTGCTTGTTCCTTGAACAAACTCCAAAGGACATTACTCCTCCCCCCTTTACCCATCTCCTGTTCCTATAACCCCTCCCCCTTTACCCATCTCCTGTTCCTATAACCCCTCCCCCTTTACCCATCTCCTGTtcctataacccccccccccccccccccaccggaAGACATCTATTTGTCCTCTACAATTCTCTAGACTCCACCTTTGTAACCAAGACAACCGAACAGCAACACCAGGCCACTTCTTCAAAGGACGTTTGGGTGGTGCCATTCATACACAGACAGTCACTTTCCAACACTCTTTTAATTCCTATGTTACTATTACATAGGTGTTTCACCTCCTGTGTCCAAGTCATCCTTCAACAGGTTACACACCCTACTGAAAACACACACCTGAGTTTTCACAGTGAACAATAGTATATGTTTTTTTTCCCTTCTATATGTACATTGTACCGTAATCACACCTCTGCATGTCAGAGTCACTCGTTGTCAGTGGCTTTGTGGTCCAGTACGTTGACGTGGATTATGAATATATAACGAGGATCCTGCTCTATGTGGGTCTTCTCCTCACCTGGTAGACAGGTAAGACTCCACTGACATGTTGAAGGCAACGGTAACATCATGTTGTTGCTGAGGGTTATGGGGGATCTGGGCATGACTGGGTTTccattaaaaagatgaacacctGA
>XM_036960434.1
TATCTTTCGCCAGAGCTCGGCTGGTGGGCGCATTGGTCCCTGCAACGTTCACCCGgatTTCTCAGATACCGATCCAATCATGTCTAAAGGAAAGGATATGGGCTCTGCCTTCATCCAGACGCAGCAGCTCCACGCTGCCATGGCCGACACTTTCCTGGAGCACATGTGTCTTCTGGACATCGACTCCGAGCCAGCCGTGGCTCGCAACACCGGAATCATCTGCACCATCGGACCCGCCTCCCGATCAGTATCCATGGCCAAGGAGATGATCAAATCTGGGATGAACATTGCAAGAATGAACTTCTCTCACGGAACTCATGAGTATCATGCTGAGACCATCAAGAATGTCCGTGAAGCCACCGAGAGCTTCGGTTCCGGCACCATCGAGTACAGACCAGTGGCCATCGCTCTGGACACCAAGGGACCCGAAATCAGGACTGGACTCATCAAGGGCAGTGGCGAAGCTGAGGTCGAGCTGAAGAAGGGAGGTCACATCAAGCTGACCTTGGACGACAAGTACAAGGACAACTGTGACGAGAAGCACCTGTGGTTGGACTACAAGAACATCACCAAGATCCTGAAGGTCGGAGCTCACGTCTACATCGACGACGGCCTCATGTCCCTGAAGGTCAAGGAAGTCGGCGCTGACTTCCTGGACTGTGAGATTGAAAATGGTGGTACTCTGGGCTCTAAGAAGGGTGTGAACTTGCCCGGTGCTGCTGTGGACCTGCCCGCTGTCTCTGAGAAGGACATCCAGGATCTGCAGTTCGGTGTGGAACAGGGAGTGGACATGGTCTTCGCCTCCTTTATCCGTAAGGCAGCTGATGTACACGCCGTCAGGAAGGTGCTGGGAGAGAAGGGCAAAAACATCAAGATCATCTCCAAACTGGAGAACCACGAGGGCGTccgcagatTCGACGAGATCCTGGAGGCTAGCGATGGCATCATGGTTGCCCGCGGCGACCTGGGTATTGAGATCCCCACGGAGAAGGTGTTCATCGCCCAGAAGATGATGACCGGACGCTGCAACAGGATCGGCAAGCCCATCACCTGCGCCACACAGATGCTGGAGAGCATGATCAAGAAGCCCCGCCCTACTCGTGCTGAGGGTTCCGATGTCGCCAACGCCGTTCTGGACGGCAACGACTGCATCATGCTGAGTGGTGAGACCGCCAAGGGAGACTACCCACTTGAGGCTGTCCGCACACAGCACAAGaTTGCTCGTGAGGCAGAGGCCGCCATGTACCACAGGCAGATGTTTGAGGAAATCCGTCGTACCTCTCACCTGACCCGTGACCCCACTGAGTCCGTTGCCATTGGCGCCGTCGAGGCTTCCTTCAAGTGCTGTGCCAGTGCCATCATCGTGCTCACGAAGACTGGCAGGTCCGCCCATCTGCTGTCCAGGTACAGGCCCCGTGCCCCCATCATCGCTGTGACCCGCTGCGGCCAGACCGCCCGTCAGGCCCATCTGTACCGCGGTATCTACCCAGTGCTGTACACCAAGCCTGCCAACGATGTCTGGGCCGAGGATGTCGACCTCCGCGTCAACTTCGCCTTGGAGATGGgCAAACACCGTCACTTCTTCAAGTCTGGAGATGTCATCATTGTCGTGACCGGATGGCGTCCAGGCCCTGGTTACACAAACACCATGCGTGTTGTGCTTGTTCCTTGAACAAACTCCAAAGGACATTACTCCTCCCCCCTTTACCCATCTCCTGTTCCTATAACCCCTCCCCCTTTACCCATCTCCTGTTCCTATAACCCCTCCCCCTTTACCCATCTCCTGTtcctataacccccccccccccccccccaccggaAGACATCTATTTGTCCTCTACAATTCTCTAGACTCCACCTTTGTAACCAAGACAACCGAACAGCAACACCAGGCCACTTCTTCAAAGGACGTTTGGGTGGTGCCATTCATACACAGACAGTCACTTTCCAACACTCTTTTAATTCCTATGTTACTATTACATAGGTGTTTCACCTCCTGTGTCCAAGTCATCCTTCAACAGGTTACACACCCTACTGAAAACACACACCTGAGTTTTCACAGTGAACAATAGTATATGTTTTTTTTCCCTTCTATATGTACATTGTACCGTAATCACACCTCTGCATGTCAGAGTCACTCGTTGTCAGTGGCTTTGTGGTCCAGTACGTTGACGTGGATTATGAATATATAACGAGGATCCTGCTCTATGTGGGTCTTCTCCTCACCTGGTAGACAGGTAAGACTCCACTGACATGTTGAAGGCAACGGTAACATCATGTTGTTGCTGAGGGTTATGGGGGATCTGGGCATGACTGGGTTTccattaaaaagatgaacacctGA

Function

symbol description
pk Acts upstream of or within eye pigmentation.

NR:

description
pyruvate kinase PKM-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0030955 potassium ion binding molecular_function
GO:0000287 magnesium ion binding molecular_function
GO:0004743 pyruvate kinase activity molecular_function

KEGG:

id description
K00873 PK, pyk; pyruvate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960431.1 False 2405 mRNA 0.54 11 98613750 98633108
XM_036960434.1 True 2344 mRNA 0.54 11 98613807 98633108

Neighbor

gene id symbol gene type direction distance location
LOC110500731 LOC106561719 coding upstream 40986 98540412 ~ 98572764 (+)
gp137 gp137 coding upstream 159784 98437885 ~ 98453966 (+)
LOC118943874 tspan18 coding upstream 344307 98161662 ~ 98269443 (+)
LOC118936883 NA coding upstream 521238 98091289 ~ 98092512 (+)
LOC118943872 cd82 coding upstream 527603 98026335 ~ 98086147 (+)
LOC118936885 NA coding downstream 165624 98798732 ~ 98799869 (+)
LOC110500657 parp16 coding downstream 221577 98854685 ~ 98868361 (+)
LOC110510476 LOC106561728 coding downstream 265387 98897524 ~ 98944948 (+)
LOC118944192 NA coding downstream 274334 98907442 ~ 98907622 (+)
LOC118944193 NA coding downstream 297249 98930357 ~ 98930537 (+)
G210376 NA non-coding upstream 8133 98605411 ~ 98605617 (+)
G210374 NA non-coding upstream 12687 98600857 ~ 98601063 (+)
G210367 NA non-coding upstream 30419 98583094 ~ 98583331 (+)
G210366 NA non-coding upstream 31918 98581594 ~ 98581832 (+)
G210365 NA non-coding upstream 32810 98580721 ~ 98580940 (+)
G210383 NA non-coding downstream 6891 98639999 ~ 98640557 (+)
G210384 NA non-coding downstream 7469 98640577 ~ 98640957 (+)
G210385 NA non-coding downstream 7968 98641076 ~ 98641290 (+)
G210387 LOC106561724 non-coding downstream 10582 98643690 ~ 98644004 (+)
G210406 LOC106584712 non-coding downstream 73707 98706815 ~ 98714503 (+)
G209759 NA other upstream 655914 97957244 ~ 97958896 (+)
G209636 NA other upstream 840985 97740061 ~ 97772765 (+)
LOC110500822 LOC106561728 other upstream 913974 97695939 ~ 97711108 (+)
G209591 NA other upstream 994661 97618617 ~ 97619089 (+)
G209586 NA other upstream 1126978 97486476 ~ 97486772 (+)
G210408 NA other downstream 64060 98697168 ~ 98700392 (+)
G210484 NA other downstream 269680 98902788 ~ 98926406 (+)
G210823 LOC106561768 other downstream 604270 99237378 ~ 99238258 (+)
G210983 LOC106561766 other downstream 1087071 99720179 ~ 99721983 (+)

Expression


Co-expression Network