LOC110500681 (scamp5)


Basic Information

Item Value
gene id LOC110500681
gene name scamp5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98842437 ~ 98854773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960520.1
TACGTGcgtaaaaagagagagacaggggagaaacGTGACGTCACGTGATTGCGTTCTACTCCCAAGCTGTCGGTGGGTGAAGACATTTCTGATTTTAGTCGAATTTTGAATTTCTGTCTCTCGATTATTTTCACAAGCGCGTATTATTGTTTCGTGAAGAATATCGTCATACAATGCAATTGACAGACGTTGCATAGTGTCAGCACTGCTGGTTTGTGGGGGAAACAAAAGGAGTTTTAATTTCCAAGGCAATTGGGTGTTGGATCATATTTATTTTCAACTGGAGGGACAGATCCAGTTGTAATGGCAGAAAACAATTTCCCTCCCCTGCCTCGCTTCATCCCTCTGAGGCCATGTTTCTATCAGGATTTTAACGAGATCCCAGACGTACACCGTTCCATGTGCAAGAAGCTGTACTACCTATGGATCTTTAACAGTGCCACCTTGGCGGTCAATCTGATTGGCTGCCTGGCGTGGATGTGCGGCGGGGGTGGAGCCACTAACTTTGGCATGGCCATTCTGTGGCTCATCCTGTTCACCCCCTGTTCCTACGTGTGCTGGTTCAGACCCATCTACAAGGCCTTCAAGACTGACAGCTCGTTCAACTTCATGGCGTTCTTCTTCGTGTTCATGGCCCAGGTGGTGATCAGCATCATTCAGTGTATAGGCATCCCAGGCTGGGGCGTCTGtGGCTGGCTGGCTACCATCACCTTCTTTAGCACCAATATAGGCTCTGCTGTTGTCATGCTGATCCCCACCATCATGTTCACTGCCATGGCTGTCCTCTCCTTCACCGGGCTCACCAAGGTGCACAACATGTACCGTGGCACTGGGGGCAGTATGAGTAAAGCCCAGGAGGAGTGGACCACCGGGGCCTGGAAGAACCCTCACGTCCAGCAGGCAGCGCAGCAAGCCGCTGTAGGGGTGGCGCAGGGAGCCATGCAGCAGCAACAACCCCAGTACTCACAGGCACCCACCTACAACTACGACGACCCGGGCATGTAGGGCAGGGTGGAGGAGAGTGTCAGGGGGGGagtgtgagagg
>XM_021578182.2
GCTAGTAAGTGGTTTGTTCGGTTCTGGCCAGCAATAAATCCGTTTCCTCAAACCGTTCCTCGTGCAATCGGTACGTGcgtaaaaagagagagacaggggagaaacGTGACGTCACGTGATTGCGTTCTACTCCCAAGCTGTCGGTGGGTGAAGACATTTCTGATTTTAGTCGAATTTTGAATTTCTGTCTCTCGATTATTTTCACAAGCGCGTATTATTGTTTCGTGAAGAATATCGTCATACAATGCAATTGACAGACGTTGCATAGTGTCAGCACTGCTGGTTTGTGGGGGAAACAAAAGGAGTTTTAATTTCCAAGGCAATTGGGTGTTGGATCATATTTATTTTCAACTGGAGGGACAGATCCAGTTGTAATGGCAGAAAACAATTTCCCTCCCCTGCCTCGCTTCATCCCTCTGAGGCCATGTTTCTATCAGGATTTTAACGAGATCCCAGACGTACACCGTTCCATGTGCAAGAAGCTGTACTACCTATGGATCTTTAACAGTGCCACCTTGGCGGTCAATCTGATTGGCTGCCTGGCGTGGATGTGCGGCGGGGGTGGAGCCACTAACTTTGGCATGGCCATTCTGTGGCTCATCCTGTTCACCCCCTGTTCCTACGTGTGCTGGTTCAGACCCATCTACAAGGCCTTCAAGACTGACAGCTCGTTCAACTTCATGGCGTTCTTCTTCGTGTTCATGGCCCAGGTGGTGATCAGCATCATTCAGTGTATAGGCATCCCAGGCTGGGGCGTCTGtGGCTGGCTGGCTACCATCACCTTCTTTAGCACCAATATAGGCTCTGCTGTTGTCATGCTGATCCCCACCATCATGTTCACTGCCATGGCTGTCCTCTCCTTCACCGGGCTCACCAAGGTCCACAACATGTACCGTGACACCGGGGCCAGTATTATATTCAGTCTGGTCCAAAAGTATTGACATTTATATGGTCAAATGATATGAAAATAGGGAAGAAAATACCCCCtatctactgtaaaatatggtaataaatctttgatgttatggggctattttgcttccgtCCTGGGgctcttgttaaggtcaacggcatcatgaactttacacAGTACCAGGACATTTATAAACCCTGGTTGCCTCTGCTAGAAGGTTGAAACATGGCCACAAGTGTATCTTTCAGTAAGACAATAACCCCCAAGGACACATcgaaatccacaaagaaatggttaattgaccacaaaaatcTGAATTTTTGCAATAACCATCTCAGTTTTTAAAGATTTTAGAAAAAAAGCTCTGTTTCGTTATCCTACCAAGGGGAGGGTTCTGGGGTACAGGGGTGGCAATAATTGTTTTGCCCTTgttaaaatctatttttctgaGCAATTGTATAAAATATGAGTTTcccattttaattttttttgcatACACAATGTAGCTCAGTATTTTAATTCtttattttatagttttttttGCTTATCTTTATCAacggtgccaataattttggacctgactgtatgtctgtatgtctctcacactatttcgttctttctctctctccacgcgCAAAACATGTACCGTTGCACTGAAGGAcagtactctttctctctgtcctccgtttgactttctcgctctctctctctctactcagttCAAttgaaagggctttattggcatggaaaacgtgtttacattgccaaaacaagtgaaataaacaaaagtgagaagacacaaaacatcaacaaaaaatgtgtttttctctaGGAGAGAAAAGACCATATTCATTCTCAAGACCTCTGTATTACTTGCAGTAATATAACTCAAGCACCATGTCTCCCTGACAACATGTATCGTGGCACCGGGCCAGTATTCTGtacgtctctcacacacactagctacagtaATATAACTAACACACCATGTCTCCCTGACAACATGTACCGTGGCACCGTGCCAGTATTCTGTATGTCCCTCTCACACACTAGCTACAGTAATATGACTCACTCTAATA

Function

symbol description
scamp5 Involved in positive regulation of cytokine production; regulation of vesicle-mediated transport; and response to endoplasmic reticulum stress. Located in Golgi apparatus; plasma membrane; and recycling endosome membrane. Is integral component of membrane.

NR:

description
secretory carrier-associated membrane protein 5 isoform X2

GO:

id name namespace
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960520.1 False 1045 mRNA 0.52 7 98842437 98854702
XM_021578182.2 True 1992 mRNA 0.43 7 98842697 98854773

Neighbor

gene id symbol gene type direction distance location
LOC110502520 LOC105018371 coding downstream 9572 98819781 ~ 98832865 (-)
LOC110500630 NA coding downstream 34097 98803005 ~ 98808340 (-)
LOC110500636 NA coding downstream 34243 98795849 ~ 98808194 (-)
LOC110500839 LOC105018309 coding downstream 119335 98692756 ~ 98723102 (-)
LOC110502529 LOC106584711 coding downstream 153301 98642990 ~ 98689136 (-)
LOC118943884 LOC106561728 coding upstream 21301 98876074 ~ 98892143 (-)
LOC110510475 LOC106561728 coding upstream 40367 98895140 ~ 98898124 (-)
LOC118944227 NA coding upstream 54189 98908962 ~ 98909070 (-)
LOC118943885 LOC106561728 coding upstream 59242 98914015 ~ 98946069 (-)
LOC118944228 NA coding upstream 77105 98931878 ~ 98931986 (-)
G210656 NA non-coding downstream 521 98835671 ~ 98841916 (-)
G210710 NA non-coding downstream 32434 98809799 ~ 98810003 (-)
G210707 NA non-coding downstream 55406 98786626 ~ 98787031 (-)
G210706 NA non-coding downstream 55977 98785611 ~ 98786460 (-)
G210665 NA non-coding downstream 56874 98784328 ~ 98785563 (-)
G210728 NA non-coding upstream 55163 98909936 ~ 98910293 (-)
G210730 NA non-coding upstream 78183 98932956 ~ 98955541 (-)
G210738 NA non-coding upstream 108978 98963751 ~ 98964109 (-)
G210757 NA non-coding upstream 161940 99016713 ~ 99016971 (-)
G210760 NA non-coding upstream 163374 99018147 ~ 99018442 (-)
LOC118936884 NA other downstream 696920 98127948 ~ 98145517 (-)
G209841 NA other downstream 1223225 97618859 ~ 97619212 (-)
G209802 NA other downstream 1340043 97501172 ~ 97502394 (-)
G209560 NA other downstream 1425249 97416821 ~ 97417188 (-)
G208658 NA other downstream 2420213 96421866 ~ 96422224 (-)
LOC118943882 LOC106561728 other upstream 87701 98936783 ~ 98944041 (-)
G210765 NA other upstream 170959 99025732 ~ 99026118 (-)
G211127 NA other upstream 268460 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 760903 99615676 ~ 99619142 (-)

Expression


Co-expression Network