LOC118943884 (LOC106561728)


Basic Information

Item Value
gene id LOC118943884
gene name LOC106561728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98876074 ~ 98892143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039209.1
gcaacaggcccctggAGGTCGAGCCTATCGTGTTGTTGACAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCCACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCAGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCGATTGgcagctcctcttcctcccactccAGGGGACGGTCTGGTGACCGTAAGAGACCCGccacatcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGCCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCCACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGGATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAATGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCACAGAGTTTGAAAAGTTGTTAAGACAAGATATCACCTTTTGAGACTTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCTCATTGGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGGTTAGTgggttttttattattttctttttCAAAATGACagacaaaagttttttttttaaatcagtgaCAAAACTGACATGCTTTATTTACAAATAAACCAAAAGCAAGCTTTTAAAATGGTTACATACAGAGACATTTATCACCAGTATCCATGGTCTACTTAGACCGGTATTCAGTccgggtcatgttcattaggcatcaaacggaagaaaacagactgaggCGTGCCCTAATGGACA
>XM_036960538.1
gcaacaggcccctggAGGTCGAGCCTATCGTGTTGTTGACAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCCACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCAGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCGATTGgcagctcctcttcctcccactccAGGGGACGGTCTGGTGACCGTAAGAGACCCGccacatcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGCCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCCACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGGATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGTGGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGGTTAGTgggt
>XR_005039210.1
gcaacaggcccctggAGGTCGAGCCTATCGTGTTGTTGACAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCCACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCAGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCGATTGgcagctcctcttcctcccactccAGGGGACGGTCTGGTGACCGTAAGAGACCCGccacatcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGCCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCCACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAA

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039209.1 False 2012 mRNA 0.52 6 98876074 98892143
XM_036960538.1 False 1623 mRNA 0.55 5 98876303 98892143
XR_005039210.1 True 1418 mRNA 0.56 4 98876662 98892143

Neighbor

gene id symbol gene type direction distance location
LOC110500681 scamp5 coding downstream 21301 98842437 ~ 98854773 (-)
LOC110502520 LOC105018371 coding downstream 43209 98819781 ~ 98832865 (-)
LOC110500630 NA coding downstream 67734 98803005 ~ 98808340 (-)
LOC110500636 NA coding downstream 67880 98795849 ~ 98808194 (-)
LOC110500839 LOC105018309 coding downstream 152972 98692756 ~ 98723102 (-)
LOC110510475 LOC106561728 coding upstream 2997 98895140 ~ 98898124 (-)
LOC118944227 NA coding upstream 16819 98908962 ~ 98909070 (-)
LOC118943885 LOC106561728 coding upstream 21872 98914015 ~ 98946069 (-)
LOC118944228 NA coding upstream 39735 98931878 ~ 98931986 (-)
LOC118943882 LOC106561728 coding upstream 44640 98936783 ~ 98944041 (-)
G210656 NA non-coding downstream 34158 98835671 ~ 98841916 (-)
G210710 NA non-coding downstream 66071 98809799 ~ 98810003 (-)
G210707 NA non-coding downstream 89043 98786626 ~ 98787031 (-)
G210706 NA non-coding downstream 89614 98785611 ~ 98786460 (-)
G210665 NA non-coding downstream 90511 98784328 ~ 98785563 (-)
G210728 NA non-coding upstream 17793 98909936 ~ 98910293 (-)
G210730 NA non-coding upstream 40813 98932956 ~ 98955541 (-)
G210738 NA non-coding upstream 71608 98963751 ~ 98964109 (-)
G210757 NA non-coding upstream 124570 99016713 ~ 99016971 (-)
G210760 NA non-coding upstream 126004 99018147 ~ 99018442 (-)
LOC118936884 NA other downstream 730557 98127948 ~ 98145517 (-)
G209841 NA other downstream 1256862 97618859 ~ 97619212 (-)
G209802 NA other downstream 1373680 97501172 ~ 97502394 (-)
G209560 NA other downstream 1458886 97416821 ~ 97417188 (-)
G208658 NA other downstream 2453850 96421866 ~ 96422224 (-)
G210765 NA other upstream 133589 99025732 ~ 99026118 (-)
G211127 NA other upstream 231090 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 723533 99615676 ~ 99619142 (-)

Expression


Co-expression Network