LOC110510476 (LOC106561728)


Basic Information

Item Value
gene id LOC110510476
gene name LOC106561728
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98897524 ~ 98944948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039211.1
tgtctgtcctatagcaggtcgcgttttgaagtgtctgtcctatagcagGTCGCGTTTTGAAGTGTCAGTCCTATAGCAGGtcgcgttttgaagtgtctgtccaatagcaggccacgttttgaagtgtcagtcctatagcaggccacgttttgaagtgtctgtcctatagcaggtcgcgttttgaagtgtctgtcctatagcagGTCGCGTTTTGAAGTGTCAGTCCTATAGCAGGtcgcgttttgaagtgtctgtccaatagcaggccacgttttgaagtgtcagtcctatagcaggccacgttttgaagtgtctgtcctatagcaggtcgcgttttgaagtgtctgtcctatagcaggtcgcgttttgaagtgtctgtccaatagcaggccacgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctgtccaatAGCGGCCTTTTTCCAAACTGGGTCCTGGGGATCCCAAGGGTTGAACGTTTAGTTTTTTTGCCCCCAGCGCTACACAGCTGACTTAAAATAATAAATTCATCATCAAGCTCTTATTATTTGAGGGGGGGAAAAACTAAATGTTAATCTCCTCCCCAGTCCCACTCGTGCTTAGGTGTTTCTGAGTGTACTGATATATAAAAGTAGGACACATGACATCacggacacttttttttttttctaaaacaATTTATATGCAGAATTGTGTCTATTGTTGCCCTCTTATTGGCTAGAAtggacccacccacccaccatcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttatcctgtcctattcg
>TU238278
CGGGAAGTTACCTGTCGCTGAGCTGGTGCGTGTATGTGCAGGCGCTTCATGTCGCCACGGACTTGCGGTAGTGTCTCTCTTGAACCCCACCGGTAATGTCTTGTACTCCTCCTTGCACTCGGGGCAGTAGTATGGACCGGTGGGCGAACCACTCCATAACTCCTGTATACAGCAGTAGCAGAAAATATGTTTGCATCTCAGCGCAGTCGGATTCCGACATATACCGTGGCACAAAGGACACACCGAGGGCTCGCAGTCCGGGGTCGGCAACGACTGACCCATTTTGCCCAGTAAAAAACGATATTTGTTACGTTTTTTTTGTCAACAACACGACAGGCTCGACCTCCAGGAAACGAAACCGTAAAATTAGGAGGAGCCAAGTGTTTGAATTACGTCCCCAGTGTAGTCCTGCACACTGCGCCCCACTCTTAAAGGTACAGGAAAACAATGTCTCCTCTGACCCAAATACATGTAGCTCGTTAGGTCGACAGATCAAACTACGCAGAGGTCTGCACTAGTGTCATCATTTGAAGAAAACATACACACGAGGAAAAAGCATGCGTACCTGTTGCCCTACCCGGCAGTTTCAGGATGGCTGTGATTGTGAGGTACCCAAGGGGTTAAAATCATACTGGCCTCTCACCATTTTAACGTCAcatgaaatacattttgaatggcttGTAAACATAGATTGTGGAAGTTAATCTCTGAACATAGGTCTACTCTAACCTTTCAATTATTTCTTCATCTGGTTTACTAAACAATTCCAATACGTGTTCTGTGTTTCATTCATAGTTTAAATTCTCCAAAGTGGCCTGGGCTTCTGGAGCTCAGACGTGCAGTAGTACGTGTAGAAACAGATAGgtcgcgttttgaagtgtctgtcctatagcaggtcgcgttttgaagtgtctgtccaatagcaggccacgttttgaagtgtctgtcctatagcaggccacgttttgaagtgtctgtccaatAGCGGCCTTTTTCCAAACTGGGTCCTGGGGATCCCAAGGGTTGAACGTTTAGTTTTTTTGCCCCCAGCGCTACACAGCTGACTTAAAATAATAAATTCATCATCAAGCTCTTATTATTTGAGGGGGGGAAAAACTAAATGTTAATCTCCTCCCCAGTCCCACTCGTGCTTAGGTGTTTCTGAGTGTACTGATATATAAAAGTAGGACACATGACATCacggacacttttttttttttctaaaacaATTTATATGCAGAATTGTGTCTATTGTTGCCCTCTTATTGGCTAGAAtggacccacccacccaccatcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttatcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctttctttctctctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccaaaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgaccgtgctgctgctccagtttaaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttatgttataat

Function

NR:

description
E3 ubiquitin-protein ligase rnf146-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039211.1 False 854 mRNA 0.46 3 98898495 98944948
TU238278 True 1891 TUCP 0.38 2 98897524 98899538

Neighbor

gene id symbol gene type direction distance location
LOC110500657 parp16 coding upstream 30134 98854685 ~ 98868361 (+)
LOC118936885 NA coding upstream 98626 98798732 ~ 98799869 (+)
LOC110500756 pk coding upstream 265387 98613750 ~ 98633108 (+)
LOC110500731 LOC106561719 coding upstream 325731 98540412 ~ 98572764 (+)
gp137 gp137 coding upstream 444529 98437885 ~ 98453966 (+)
LOC118943887 NA coding downstream 4528 98949476 ~ 98950379 (+)
LOC118944187 NA coding downstream 7653 98859346 ~ 98986848 (+)
atp8b4 atp8b4 coding downstream 144726 99089674 ~ 99152115 (+)
cops2 cops2 coding downstream 221415 99166363 ~ 99180897 (+)
LOC110502545 cep152 coding downstream 243953 99188901 ~ 99207160 (+)
G210483 NA non-coding upstream 4380 98893442 ~ 98894115 (+)
G210310 NA non-coding upstream 24769 98872945 ~ 98873726 (+)
G210276 scamp5 non-coding upstream 43822 98846805 ~ 98854673 (+)
G210472 NA non-coding upstream 63309 98834872 ~ 98835186 (+)
G210466 NA non-coding upstream 74034 98822259 ~ 98824461 (+)
G210492 NA non-coding downstream 34880 98979828 ~ 98980286 (+)
G210508 NA non-coding downstream 70104 99015052 ~ 99015276 (+)
G210308 NA non-coding downstream 77109 99022057 ~ 99022698 (+)
G210288 NA non-coding downstream 80050 99024998 ~ 99025499 (+)
G210776 NA non-coding downstream 148660 99093608 ~ 99093905 (+)
G210408 NA other upstream 198103 98697168 ~ 98700392 (+)
G209759 NA other upstream 940659 97957244 ~ 97958896 (+)
G209636 NA other upstream 1125730 97740061 ~ 97772765 (+)
LOC110500822 LOC106561728 other upstream 1198719 97695939 ~ 97711108 (+)
G209591 NA other upstream 1279406 97618617 ~ 97619089 (+)
G210823 LOC106561768 other downstream 292430 99237378 ~ 99238258 (+)
G210983 LOC106561766 other downstream 775231 99720179 ~ 99721983 (+)
LOC110502581 LOC106561777 other downstream 860220 99777695 ~ 99818794 (+)
LOC110500919 LOC106584740 other downstream 951671 99896619 ~ 99899881 (+)
G211779 NA other downstream 1514709 100459657 ~ 100461981 (+)
LOC118944192 NA coding downstream 7904 98907442 ~ 98907622 (+)
LOC118944193 NA coding downstream 30819 98930357 ~ 98930537 (+)
G210303 NA non-coding downstream 10635 98910173 ~ 98958171 (+)
G210484 NA other downstream 3250 98902788 ~ 98926406 (+)

Expression


Co-expression Network