LOC118943885 (LOC106561728)


Basic Information

Item Value
gene id LOC118943885
gene name LOC106561728
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98914015 ~ 98946069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960562.1
CAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATCAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGCCGTCAGTGTAGTGTGCGTGTCTGTACCGTGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTGAAATCAGCAGAGTTACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCAGAGTTTGAAAAGTTGTTAAAAGACAAGAAATCACCTTTTGAGACGTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCCGCCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa
>XM_036960568.1
AGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATCAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTT
>TU238753
ctcgaaccctcgaccttctagcccgaagtccagcgcgctatcgactgtgacGCAAAAGCAATGCTCGGGAGGCAGAGTCCGATATcctcgcttataaacccagggtcgttacaatgtTCTGTCAGATCCAATTTGTAAGAGGTAGTGTGGTTGAAACCCTCTGCCATTATAACACTTTATTAATGCTCCCTGACTTAACATGCCAGTATGGGACTCACCTATGAGTTAGTCTGGCTAACACAAAGTCCTGTCGTTGTTGTTGAGAGAACCAACCAATGTGTCGGCTCCAATTCTGAGCAAATGATGCCTTTTTTACTAAAGGCCTCCTGTCCAGACCAGTGTGTCACAGCTCTAAAATAACGTGTCTTAAAACATGGAAGGCGGTcgggaggaggcaagatcaggtcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaactccaaacagcaagcaatgcaggtgtagaagcacgtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacataacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagtttaaactggagcagcagcacggtcaggtggactggggacagcaaggagtcatcatgtcaggtattcctggggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaattagagagagcatatgtgggatggccagtcctcttttggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagagagaaagaaagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggataagtactccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggatggtgggtgggtgggtccaTTCTAGCCAATAAGAGGGCAACAATAGACACAATTCTGCATATAAATtgttttagaaaaaaaaaaaagtgtccgtGATGTCATGTGTCCTACTTTTATATATCAGTACACTCAGAAACACCTAAGCACGAGTGGGACTGGGGAGGAGATTAACATTTAGTTTTTCCCCCCCTCAATAAGAGCTTGATGATGAATTTATTATTTTAAGTCAGCTGTGTAGCGCTGGGGGCAAAAAAACTAAACGTTCAACCCTTGGGATCCCCAGGACCCAGTTTGGAAAAAGGCCGCTattggacagacacttcaaaacgtggcctgctataggacagacacttcaaaacgtggcctgctattggacagacacttcaaaacgcgacctgctataggacagacacttcaaaacgcgacctgctataggacagacacttcaaaacgtggcctgctataggactgacacttcaaaacgtggcctgctattggacagacacttcaaaacgcgaCCTGCTATAGGACTGACACTTCAAAACGCGACCTATCTGTTTCTACACGTACTACTGCACGTCTGAGCTCCAGAAGCCCAGGCCACTTTGGAGAATTTAAACTATGAATGAAACACAGAACACGTATTGGAATTGTTTAGTAAACCAGATGAAGAAATAATTGAAAGGTTAGAGTAGACCTATGTTCAGAGATTAACTTCCACAATCTATGTTTACaagccattcaaaatgtatttcatgTGACGTTAAAATGGTGAGAGGCCAGTATGATTTTAACCCCTTGGGTACCTCACAATCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATCAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGCCGTCAGTGTAGTGTG

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960562.1 False 3115 mRNA 0.49 7 98914015 98921036
XM_036960568.1 False 1596 mRNA 0.55 3 98918096 98921035
TU238753 True 3634 TUCP 0.44 4 98918448 98946069

Neighbor

gene id symbol gene type direction distance location
LOC118944227 NA coding downstream 4945 98908962 ~ 98909070 (-)
LOC110510475 LOC106561728 coding downstream 15891 98895140 ~ 98898124 (-)
LOC118943884 LOC106561728 coding downstream 21872 98876074 ~ 98892143 (-)
LOC110500681 scamp5 coding downstream 59242 98842437 ~ 98854773 (-)
LOC110502520 LOC105018371 coding downstream 81150 98819781 ~ 98832865 (-)
LOC118944228 NA coding upstream 10842 98931878 ~ 98931986 (-)
LOC118943882 LOC106561728 coding upstream 15747 98936783 ~ 98944041 (-)
LOC118944200 NA coding upstream 28872 98949908 ~ 98950121 (-)
LOC118944229 NA coding upstream 33095 98954131 ~ 98954239 (-)
LOC110500849 LOC106561754 coding upstream 37992 98959028 ~ 98967298 (-)
G210728 NA non-coding downstream 3722 98909936 ~ 98910293 (-)
G210656 NA non-coding downstream 72099 98835671 ~ 98841916 (-)
G210710 NA non-coding downstream 104012 98809799 ~ 98810003 (-)
G210707 NA non-coding downstream 126984 98786626 ~ 98787031 (-)
G210706 NA non-coding downstream 127555 98785611 ~ 98786460 (-)
G210730 NA non-coding upstream 11920 98932956 ~ 98955541 (-)
G210738 NA non-coding upstream 42715 98963751 ~ 98964109 (-)
G210757 NA non-coding upstream 95677 99016713 ~ 99016971 (-)
G210760 NA non-coding upstream 97111 99018147 ~ 99018442 (-)
G211106 NA non-coding upstream 174063 99095099 ~ 99095361 (-)
LOC118936884 NA other downstream 768498 98127948 ~ 98145517 (-)
G209841 NA other downstream 1294803 97618859 ~ 97619212 (-)
G209802 NA other downstream 1411621 97501172 ~ 97502394 (-)
G209560 NA other downstream 1496827 97416821 ~ 97417188 (-)
G208658 NA other downstream 2491791 96421866 ~ 96422224 (-)
G210765 NA other upstream 104696 99025732 ~ 99026118 (-)
G211127 NA other upstream 202197 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 694640 99615676 ~ 99619142 (-)
LOC110502568 LOC106561766 other upstream 789665 99697219 ~ 99725327 (-)
ctdspl2a LOC106561755 coding upstream 28775 98974844 ~ 98996174 (-)
LOC110500795 LOC106561757 coding upstream 51342 98997411 ~ 99013377 (-)
G211107 NA non-coding upstream 149869 99095938 ~ 99096218 (-)
G211402 NA other upstream 910244 99856313 ~ 99857855 (-)

Expression


Co-expression Network