LOC118943882 (LOC106561728)


Basic Information

Item Value
gene id LOC118943882
gene name LOC106561728
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98936783 ~ 98944041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960525.1
GGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCAGAGTTTGAAAAGTTGTTAAAAGACAAGAAATCACCTTTTGAGACGTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa
>XM_036960526.1
CTCACAATCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACATCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGTCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCGCCGTTGAGCTGGACCCACCTCTACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGCGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCAGAGTTTGAAAAGTTGTTAAAAGACAAGAAATCACCTTTTGAGACGTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa
>TU238756
TTACGGTTTCGTTTCCTGGAGGTCGAGCCTGTCGTGTTGTTGACAAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCg

Function

NR:

description
E3 ubiquitin-protein ligase rnf146-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960525.1 False 3087 mRNA 0.49 7 98936783 98944011
XM_036960526.1 False 2981 mRNA 0.48 6 98936783 98944041
TU238756 True 569 TUCP 0.54 2 98942474 98943797

Neighbor

gene id symbol gene type direction distance location
LOC118944228 NA coding downstream 4797 98931878 ~ 98931986 (-)
LOC118943885 LOC106561728 coding downstream 15747 98914015 ~ 98946069 (-)
LOC118944227 NA coding downstream 27713 98908962 ~ 98909070 (-)
LOC110510475 LOC106561728 coding downstream 38659 98895140 ~ 98898124 (-)
LOC118943884 LOC106561728 coding downstream 44640 98876074 ~ 98892143 (-)
LOC118944200 NA coding upstream 5867 98949908 ~ 98950121 (-)
LOC118944229 NA coding upstream 10090 98954131 ~ 98954239 (-)
LOC110500849 LOC106561754 coding upstream 14987 98959028 ~ 98967298 (-)
ctdspl2a LOC106561755 coding upstream 30803 98974844 ~ 98996174 (-)
LOC110500795 LOC106561757 coding upstream 53370 98997411 ~ 99013377 (-)
G210728 NA non-coding downstream 26490 98909936 ~ 98910293 (-)
G210656 NA non-coding downstream 94867 98835671 ~ 98841916 (-)
G210710 NA non-coding downstream 126780 98809799 ~ 98810003 (-)
G210707 NA non-coding downstream 149752 98786626 ~ 98787031 (-)
G210706 NA non-coding downstream 150323 98785611 ~ 98786460 (-)
G210738 NA non-coding upstream 19710 98963751 ~ 98964109 (-)
G210757 NA non-coding upstream 72672 99016713 ~ 99016971 (-)
G210760 NA non-coding upstream 74106 99018147 ~ 99018442 (-)
G211106 NA non-coding upstream 151058 99095099 ~ 99095361 (-)
G211107 NA non-coding upstream 151897 99095938 ~ 99096218 (-)
LOC118936884 NA other downstream 791266 98127948 ~ 98145517 (-)
G209841 NA other downstream 1317571 97618859 ~ 97619212 (-)
G209802 NA other downstream 1434389 97501172 ~ 97502394 (-)
G209560 NA other downstream 1519595 97416821 ~ 97417188 (-)
G208658 NA other downstream 2514559 96421866 ~ 96422224 (-)
G210765 NA other upstream 81691 99025732 ~ 99026118 (-)
G211127 NA other upstream 179192 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 671635 99615676 ~ 99619142 (-)
LOC110502568 LOC106561766 other upstream 766660 99697219 ~ 99725327 (-)
G211402 NA other upstream 912272 99856313 ~ 99857855 (-)

Expression


Co-expression Network