LOC118943887


Basic Information

Item Value
gene id LOC118943887
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98949476 ~ 98950379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039213.1
actgggagtctccttagtgaaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATATGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGGCGTattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACTCACCATT

Function

NR:

description
LOC569167 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039213.1 True 512 mRNA 0.44 2 98949476 98950379

Neighbor

gene id symbol gene type direction distance location
LOC110510476 LOC106561728 coding upstream 4528 98897524 ~ 98944948 (+)
LOC118944193 NA coding upstream 18939 98930357 ~ 98930537 (+)
LOC118944192 NA coding upstream 41854 98907442 ~ 98907622 (+)
LOC110500657 parp16 coding upstream 81115 98854685 ~ 98868361 (+)
LOC118936885 NA coding upstream 149607 98798732 ~ 98799869 (+)
LOC118944187 NA coding downstream 2222 98859346 ~ 98986848 (+)
atp8b4 atp8b4 coding downstream 139295 99089674 ~ 99152115 (+)
cops2 cops2 coding downstream 215984 99166363 ~ 99180897 (+)
LOC110502545 cep152 coding downstream 238522 99188901 ~ 99207160 (+)
LOC110500866 cep152 coding downstream 257588 99207967 ~ 99210940 (+)
G210480 NA non-coding upstream 8353 98877838 ~ 98941123 (+)
G210284 NA non-coding upstream 35344 98874340 ~ 98914132 (+)
G210483 NA non-coding upstream 55361 98893442 ~ 98894115 (+)
G210310 NA non-coding upstream 75750 98872945 ~ 98873726 (+)
G210276 scamp5 non-coding upstream 94803 98846805 ~ 98854673 (+)
G210492 NA non-coding downstream 29449 98979828 ~ 98980286 (+)
G210508 NA non-coding downstream 64673 99015052 ~ 99015276 (+)
G210308 NA non-coding downstream 71678 99022057 ~ 99022698 (+)
G210288 NA non-coding downstream 74619 99024998 ~ 99025499 (+)
G210776 NA non-coding downstream 143229 99093608 ~ 99093905 (+)
G210484 NA other upstream 23070 98902788 ~ 98926406 (+)
G210408 NA other upstream 249084 98697168 ~ 98700392 (+)
G209759 NA other upstream 991640 97957244 ~ 97958896 (+)
G209636 NA other upstream 1176711 97740061 ~ 97772765 (+)
G210823 LOC106561768 other downstream 286999 99237378 ~ 99238258 (+)
G210983 LOC106561766 other downstream 769800 99720179 ~ 99721983 (+)
LOC110502581 LOC106561777 other downstream 854789 99777695 ~ 99818794 (+)
LOC110500919 LOC106584740 other downstream 946240 99896619 ~ 99899881 (+)
G211779 NA other downstream 1509278 100459657 ~ 100461981 (+)

Expression


Co-expression Network