XLOC_020745 (si:zfos-943e10.1)


Basic Information

Item Value
gene id XLOC_020745
gene name si:zfos-943e10.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3262413 ~ 3299355 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040916
CTTCAACAACACAGAACATGCTCAAACTTATGACCATAAGAAAGCATGTGAGGACAgttaaaacacaaacactgctctGTTACACAGACGCCATCGTATAATCACCCATACTCGCTCTCCACCCAGACTTCCTCCCCCTACCACGTTGCATACATACACGCGTCCTGTCCATATAAGGGGCGTGGGCGGAGTTCGAACTCGAGTGCCTCGCCGCGATTGGTCGCCGCGACTGATCAGATGCGCGCTGATTGGTCGGAAGCACTTGGTCCGATTTTGTCTCATTTTGTTAATCAGGCCGCGCTCATGGGACGCCGGAGAGAAACCGGATCATCACATCCTCGTTAAACGGTGTCTTTTAGTCGGTGCCTGTTCGGTTCGCAgaggaagaatgttggaaaacaagAGGGAGAGGTTGAAAACGTTTCTGAGGAAGATCGACGAGAGCGCCATATCGCGACTCAAGCATTTAATGAAAGAGAGCTATGCTGTGGACTCGGGCTCCATCCCTGTAAAGGTGAAGAAGAGCAGGTCGAAGAGCAAACTGAGCAGCAGAAAAGCCTTCAGTCTGGAGGAAAACCAGCTGGAGCAGAGCAAGAGCTTGTGCCGGCAGGTCCCGGCCAGgtctcAGACAGTAGATGTGGACAGGCCTTTAGAGAGGAGTGAAAGCCTGAACTCCAGAAGTAGCTTCACCAAACACAACAAAACCTTCCACAAACTCTTCCCAGAAGTCCCGGAGGCAGAAGATCTGCTGCACGcatACATCTGTGCGCTGCAGAAGGAGGTCCCGTATCACGGCCGTCTGTacatcacagacacacacatctgCTTCTTCTCTTCTGTGCTGCTCAAAGACACCAGggtggtCATTCCtgtgtccagtgtgtgtgtggtgaagaAGCAGAACACAGCACTGCTGGTGCCCAATGCCATCTCTGTGCGCACCTCTGATGGggacaagtatTTGTTTGTGTCCCTGCGTAACCGAGAGGGCTGCTATAAGCTGCTGCGCTCCGTCTGTCCTCAGCTGGAGgACTGCAGCGCTAACAGCAGCCCGTTATTCTCCTCAGCGGAAAACAGCTTCGACCACAACAGAGTGGTGAACTCGAGTCAGTCCAGTCTGGAGGATGTGTGTGATTTGTCGTCTCCTCCGGAGGATCAGATCTCTGCGTCACCGCGACTGTCGAGAGagaGTGCAGCGAAAGCCTCAGTCAGTTCACCCACTGAAGACGACAGCGCGGATGATGAGCACACCGGTACGATTATGAATATTCATGACTGTGTAAACGAGTCTGCGATGACGCTGTCGTTTCATTGGCTGATTTGGGGTGTGTTTTCCGTCTCCACAGGAAGCTGGTGGGTGTGGAGCGTGACGGAGCGAGCGCGATCGCTGCTCATCCAGAGAGAAATGAACAAGCTGAACACACTCCTGCTCGTCTACCTGATCCTGGTGTTTCTGCTGCTGTTGTCGTCTGGATACATCGGTCTGCGTATCGTGGCTTTAGAGGAGCAGCTGTCGTCTCTCGGAGCTTTACCTGACCTCACTTTACATAGCAGCAGATATAAAGAAACATAGGAAGAGTCCTGGATGTGAACCGTGGAAAAGCACCGAAACGCCTGCCGGAGCTGCTGGGACGTCGTCATTTGCACATCACTTTCTGCCAAGAGATGCGAACATGTGTGTTCACTTGCTCCGCGAAAACAACCAAAGACAGACGGAGAGACGAACGAAAGCATTTCAGCGCCTTCATTTCACCAGTCGAACATTTCACCGACATGTCGACCGTGACCTCACTTCCTTTATTTTTTGATCGATTGCCTGCTTTATCTTCTTCTGCAACCACAGCGTCTTTCATTCTAATGTGTTTCGTTTATCTTCAAAGGGGTTGCCATATTAAACCAAGTTCGGGTTTAACGAATTAAAAAATTGAGAGAGCGCTAAGCTAGCTATCCGACCCTTAGTATTACTGTATGTATCGTCTATgcacaaaagaagaaagaaaaaaaagaatcagGTATTTAACACACGTTTTGTAACGTCGTTCGTGTTTTTATACTTAACGGAGAAGAGTTCGCCGAATACGACGGTTTCTTCgttatttctaaatgtaaaaaaaaaaagattgtattgtattaaaataatattaataataataaaagtggcTTTTAATGCATCAGGTGCGTCGAAAGTCCAATTATCGATTATAAAACGCATGTGCGCGCAAAACGAAATGAAATAAGCATTTGCGTTCAGGGCTCGGAAGTTTGCGATACTTGACGAAAGCGGTCCAAAATATGCATGGTTTTTGTgcgcgtgtatgtatgtgtgtgagtgtgtgttttattaatctGTTCCGATGTGTCCACGAGGTGTGATTCGAGTGCACTTTATAGTGTGTCCTGTTGGGGGCGCTGTGGTGAAGCTCTGTTCATTTTAGACGGTGCTAAAATAAAATCACGCTCAGGGCTCAAGGGCCGACTCGCAATGCATCATGGGAGTCTATATATATCTTTCAGGCACTCCAGAATTAAATTGCGCAAAGTTGTCGcgcattttttattatagttattgttTTTTTGCATGGCGCTAATTCTCAGGAGCGATTTTTCCTGCAGTTGCCCTACGAAACAGAGATTCCCTGATCCATGTAAACGATAATAACAGTGGATTCGCACAACATTTCAACTAATCGTCGCAAAAAACCTCAACGACTGTCTAATAACTACAATGCAAGAGTTTGTTTCTATTATTGCACTATGGAAGTGTTGGATTTATGGTTTTGTATGAATATGTAAGTAAACCTCGTTTTTCGGTCTATTTATTGCCTAATGTGTAATTCAAAGTGGTCTCTGTGAGACTGGCTTTGGCATTGTTTGAATAAATCAAGTGCTAAGGAAATTCGGCGTCTCCAGTGTGTTTGTTTACTTTGGTCTAAACatgacatatttatttatttagcagctGTGGAATTTGTTTATGGATCTTCAGGATGTCCGTCTTCATCACTGCCAAGAGTAATTACTCTTctgattttaaaaatagaaatatgtAGTGGATATTTTCCCCCTCATTaaatttgctatatatatatatatatatatatatatatatatatatatatatataaaataataatg
>TCONS_00040917
CCCTCTTTAGCTTCATTATCGCTGGAGCTGTGCTTATGAAACGTAGCGGCTGTAAAAAAAGCAAACCTTTAGACCGCTTGCTCAGCTCGTCTGCTTCAGTTCACGGTACACCGAGTCCAGACGCAGAAGAGAAGCAGACATGGACTCCATAGCTGTGGATTCAGCCGTGTGTGAGGATTTGGGAAGCTATGCTGTGGACTCGGGCTCCATCCCTGTAAAGGTGAAGAAGAGCAGGTCGAAGAGCAAACTGAGCAGCAGAAAAGCCTTCAGTCTGGAGGAAAACCAGCTGGAGCAGAGCAAGAGCTTGTGCCGGCAGGTCCCGGCCAGgtctcAGACAGTAGATGTGGACAGGCCTTTAGAGAGGAGTGAAAGCCTGAACTCCAGAAGTAGCTTCACCAAACACAACAAAACCTTCCACAAACTCTTCCCAGAAGTCCCGGAGGCAGAAGATCTGCTGCACGcatACATCTGTGCGCTGCAGAAGGAGGTCCCGTATCACGGCCGTCTGTacatcacagacacacacatctgCTTCTTCTCTTCTGTGCTGCTCAAAGACACCAGggtggtCATTCCtgtgtccagtgtgtgtgtggtgaagaAGCAGAACACAGCACTGCTGGTGCCCAATGCCATCTCTGTGCGCACCTCTGATGGggacaagtatTTGTTTGTGTCCCTGCGTAACCGAGAGGGCTGCTATAAGCTGCTGCGCTCCGTCTGTCCTCAGCTGGAGgACTGCAGCGCTAACAGCAGCCCGTTATTCTCCTCAGCGGAAAACAGCTTCGACCACAACAGAGTGGTGAACTCGAGTCAGTCCAGTCTGGAGGATGTGTGTGATTTGTCGTCTCCTCCGGAGGATCAGATCTCTGCGTCACCGCGACTGTCGAGAGagaGTGCAGCGAAAGCCTCAGTCAGTTCACCCACTGAAGACGACAGCGCGGATGATGAGCACACCGGAAGCTGGTGGGTGTGGAGCGTGACGGAGCGAGCGCGATCGCTGCTCATCCAGAGAGAAATGAACAAGCTGAACACACTCCTGCTCGTCTACCTGATCCTGGTGTTTCTGCTGCTGTTGTCGTCTGGATACATCGGTCTGCGTATCGTGGCTTTAGAGGAGCAGCTGTCGTCTCTCGGAGCTTTACCTGACCTCACTTTACATAGCAGCAGATATAAAGAAACATAGGAAGAGTCCTGGATGTGAACCGTGGAAAAGCACCGAAACGCCTGCCGGAGCTGCTGGGACGTCGTCATTTGCACATCACTTTCTGCCAAGAGATGCGAACATGTGTGTTCACTTGCTCCGCGAAAACAACCAAAGACAGACGGAGAGACGAACGAAAGCATTTCAGCGCCTTCATTTCACCAGTCGAACATTTCACCGACATGTCGACCGTGACCTCACTTCCTTTATTTTTTGATCGATTGCCTGCTTTATCTTCTTCTGCAACCACAGCGTCTTTCATTCTAATGTGTTTCGTTTATCTTCAAAGGGGTTGCCATATTAAACCAAGTTCGGGTTTAACGAATTAAAAAATTGAGAGAGCGCTAAGCTAGCTATCCGACCCTTAGTATTACTGTATGTATCGTCTATgcacaaaagaagaaagaaaaaaaagaatcagGTATTTAACACACGTTTTGTAACGTCGTTCGTGTTTTTATACTTAACGGAGAAGAGTTCGCCGAATACGACGGTTTCTTCgttatttctaaatgtaaaaaaaaaaaga
>TCONS_00040918
GAAGCACTTGGTCCGATTTTGTCTCATTTTGTTAATCAGGCCGCGCTCATGGGACGCCGGAGAGAAACCGGATCATCACATCCTCGTTAAACGGTGTCTTTTAGTCGGTGCCTGTTCGGTTCGCAgaggaagaatgttggaaaacaagAGGGAGAGGTTGAAAACGTTTCTGAGGAAGATCGACGAGAGCGCCATATCGCGACTCAAGCATTTAATGAAAGAGAGCTATGCTGTGGACTCGGGCTCCATCCCTGTAAAGGTGAAGAAGAGCAGGTCGAAGAGCAAACTGAGCAGCAGAAAAGCCTTCAGTCTGGAGGAAAACCAGCTGGAGCAGAGCAAGAGCTTGTGCCGGCAGGTCCCGGCCAGgtctcAGACAGTAGATGTGGACAGGCCTTTAGAGAGGAGTGAAAGCCTGAACTCCAGAAGTAGCTTCACCAAACACAACAAAACCTTCCACAAACTCTTCCCAGAAGTCCCGGAGGCAGAAGATCTGCTGCACGcatACATCTGTGCGCTGCAGAAGGAGGTCCCGTATCACGGCCGTCTGTacatcacagacacacacatctgCTTCTTCTCTTCTGTGCTGCTCAAAGACACCAGggtggtCATTCCtgtgtccagtgtgtgtgtggtgaagaAGCAGAACACAGCACTGCTGGTGCCCAATGCCATCTCTGTGCGCACCTCTGATGGggacaagtatTTGTTTGTGTCCCTGCGTAACCGAGAGGGCTGCTATAAGCTGCTGCGCTCCGTCTGTCCTCAGCTGGAGgACTGCAGCGCTAACAGCAGCCCGTTATTCTCCTCAGCGGAAAACAGCTTCGACCACAACAGAGTGGTGAACTCGAGTCAGTCCAGTCTGGAGGATGTGTGTGATTTGTCGTCTCCTCCGGAGGATCAGATCTCTGCGTCACCGCGACTGTCGAGAGagaGTGCAGCGAAAGCCTCAGTCAGTTCACCCACTGAAGACGACAGCGCGGATGATGAGCACACCGGAAGCTGGTGGGTGTGGAGCGTGACGGAGCGAGCGCGATCGCTGCTCATCCAGAGAGAAATGAACAAGCTGAACACACTCCTGCTCGTCTACCTGATCCTGGTGTTTCTGCTGCTGTTGTCGTCTGGATACATCGGTCTGCGTATCGTGGCTTTAGAGGAGCAGCTGTCGTCTCTCGGAGCTTTACCTGACCTCACTTTACATAGCAGCAGATATAAAGAAACATAGGAAGAGTCCTGGATGTGAACCGTGGAAAAGCACCGAAACGCCTGCCGGAGCTGCTGGGACGTCGTCATTTGCACATCACTTTCTGCCAAGAGATGCGAACATGTGTGTTCACTTGCTCCGCGAAAACAACCAAAGACAGACGGAGAGACGAACGAAAGCATTTCAGCGCCTTCATTTCACCAGTCGAACATTTCACCGACATGTCGACCGTGACCTCACTTCCTTTATTTTTTGATCGATTGCCTGCTTTATCTTCTTCTGCAACCACAGCGTCTTTCATTCTAATGTGTTTCGTTTATCTTCAAAGGGGTTGCCATATTAAACCAAGTTCGGGTTTAACGAATTAAAAAATTGAGAGAGCGCTAAGCTAGCTATCCGACCCTTAGTATTACTGTATGTATCGTCTATgcacaaaagaagaaagaaaaaaaagaatcagGTATTTAACACACGTTTTGTAACGTCGTTCGTGTTTTTATACTTAACGGAGAAGAGTTCGCCGAATACGACGGTTTCTTCgttatttctaaatgtaaaaaaaaaaaga
>TCONS_00040919
GGCTTGAAGCCAGTCTGTGCtgcttaatgttattatttttattagaggATGGACAGATCTCTGAGTTTACGCTTCTCTCGCAGACGTGTGAATCACCTGTACAGCTATGCTGTGGACTCGGGCTCCATCCCTGTAAAGGTGAAGAAGAGCAGGTCGAAGAGCAAACTGAGCAGCAGAAAAGCCTTCAGTCTGGAGGAAAACCAGCTGGAGCAGAGCAAGAGCTTGTGCCGGCAGGTCCCGGCCAGgtctcAGACAGTAGATGTGGACAGGCCTTTAGAGAGGAGTGAAAGCCTGAACTCCAGAAGTAGCTTCACCAAACACAACAAAACCTTCCACAAACTCTTCCC

Function

symbol description
si:zfos-943e10.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5694 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000103522

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040916 False 3135 mRNA 0.45 12 3262413 3299355
TCONS_00040917 False 1733 mRNA 0.50 13 3263428 3284023
TCONS_00040918 False 1772 mRNA 0.50 13 3263428 3299100
TCONS_00040919 True 347 mRNA 0.50 4 3273344 3275888

Neighbor

gene id symbol gene type direction distance location
XLOC_020744 gpr35.1 coding downstream 534 3252936 ~ 3261879 (-)
XLOC_020743 lonp1 coding downstream 79448 3160447 ~ 3182965 (-)
XLOC_020742 lmnb2 coding downstream 110056 3121086 ~ 3152357 (-)
XLOC_020741 ing5a coding downstream 170277 2949111 ~ 3092136 (-)
XLOC_020740 pigx coding downstream 324884 2931340 ~ 2937529 (-)
XLOC_020746 tbxa2r coding upstream 37368 3336723 ~ 3344613 (-)
XLOC_020747 NA coding upstream 48158 3347513 ~ 3347884 (-)
XLOC_020748 ptprsa coding upstream 89992 3389347 ~ 3680725 (-)
XLOC_020749 NA coding upstream 441231 3740586 ~ 3741284 (-)
XLOC_020750 NA coding upstream 584252 3883607 ~ 3886684 (-)
XLOC_020738 NA non-coding downstream 369867 2889663 ~ 2892546 (-)
XLOC_020736 NA non-coding downstream 434327 2814463 ~ 2828086 (-)
XLOC_020734 NA non-coding downstream 436712 2795028 ~ 2825701 (-)
XLOC_020735 NA non-coding downstream 455386 2799465 ~ 2807027 (-)
XLOC_020733 NA non-coding downstream 472875 2769742 ~ 2789538 (-)
XLOC_020752 CU074310.1 non-coding upstream 1012448 4311803 ~ 4313118 (-)
XLOC_020756 NA non-coding upstream 1433652 4733007 ~ 4735337 (-)

Expression


Co-expression Network