ctdspl2a (LOC106561755)


Basic Information

Item Value
gene id ctdspl2a
gene name LOC106561755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98974844 ~ 98996174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960590.1
tatatatatatatatcagtgtaGTTCAATCGAATGCGTCCACTGTTTATGATGAGGCGAGAAATGGCGTCCACAGAGCCCGTCAGTGGTATGTGGTCCTAAACACAACGGACAGCCACACGGCTCTCTCGGTGGCCGCATAGTTGCGGGCTACCAGTGGACAGGGCGAGCGGCCGACTTTAGTTACGAGTTTCTTGGACCATTTGTCTTCCATGTAACGTGTAGGATGATGAGGCTGAGAGTACGGAAGGCTTCTCAGCAGCCCAAACCCAGCCCCGGCCGTCCAGCCTCAGAACCCCGCCCAGCTCAGGCCAAGAGAAAACACTGCGAGGTGGCGCCCCCGCCCAGGAGAGGCCTCAGGATGCAGAAGAATGAGGCTGGCCTGTTCTCTACCATCAAGAAGTTCATCAGGGGAAATGCTGTCAAGgTAGAGCAGGACATCCCAGCTAAGAGGAGTCGTATTGATTGTAAAGTGGAAAACAGCAACCTGATCACGTCTTCTCCTCACCCACCAACCAAAGCCATCGGCAGGGGCTGCAGGAGAGGTGCTAACAAACCTGAACCGATGACGTTGAACAGTAAGCCCCTGAAGCCCAACGGTAAACTGGAGGTCCCCGTGGAGGAGGCGAGCAGTCCACCTCGCACCACTCTCCTGGGGACCATCTTCTCTCCCGTCTTCAACTTCTTCTCTCCTGCTACCAAGACAGCCACTCCTGAGTCTGGCTCCCCCGGGCAGGGGGGGTCGGAGGCTGAGGAGATGCCGAAGCAGCTGGAAAAGGAGACGGTGGTGGAGGAGATACCCACCAGTACCCCTGCATCTACAGGGGGCGTCGTCCTGTCCTCTGTTGCCCCAGCTCCATCAGTACCCCCACCACAACAGGCTCCTCTGGCTACCCCAGAACCATCTGTCGAAGGAGGGGAGATGGCTACAGATATGCCCCCTCTAACAGCTCCGGGCTGCATTCCAGTCCGCTGTTACCCCCACATCTCTCCCACGGCCCCTGCAGAGGGCACCTACGAGGAGGACTGGGAAGTCTTTGATCCGTACTTCTTCATCAAGCACGTGCCTCCGTTGACAGAGGAGCAGATAGCCAGGAAACCAGCACTGCCCCTTAAAACACGCAGCACACCAGAGTTCTCCCTAGTTCTAGATCTGGACGAGACGTTGGTGCACTGTAGTCTGAATGAGTTGGACGACGCAGACCTGACCTTCCCTGTCCTGTTCCAAGACGTCATCTACCAGGTGTACGTGCGGTTGAGGCCGTTTTTCAGAGAGTTCCTGGAGCGCATGTCTCAAATTTACGagATCATTCTGTTCACTGCCTCTAAGAAGGTGTATGCAGACAAGCTGCTCAACATCCTGGACCCCAAGAAACAGTTGGTCAGACATCGGTTGTTCCGTGAGCACTGTGTATGTGTTCAAGGAAACTACATCAAGGACTTAAACATTCTGGGAAGAGATCTTTCTAAGACTGTAATAATAGACAATTCACCTCAAGCCTTCGCCTATCAGCTTTCCAATGGGATTCCCATCGAGAGCTGGTTCATGGACAGGAATGATAGCGAGCTCCTCAAGCTGGTTCCTTTCTTAGAGAAGCTGGTGGAGATGaaTGAGGACGTAAGGCCTTACGTCAGACAGCAGTTTCGTCTTCATGACCTACTTCCTCCCGACTGATCCGTGATTGGCCGACCCAGCAGGCTAACCCATAGAAGTAGAATGTGTACATTATTCATTCTGGTTCTACGGGCTAAACCTCCCAGCACACGGAGAGGGGATGCCTTCCGTCCAACACGGTTGGAGATGACGAGAATCAACTTCCAACTGACTCTGAGGATGTCGTCCAAGTGGAGAGCTGTCTACAGCATTGCCCGTTACCAACGAGAATCTGTTCAACAAAATAACAGTTTACAGAGGGACATTTGTATCTAAACAACtacaaaacaaatattttgaaGCTATGtatatgttttgtatactcaaacTAAACTGTTATATTCCAACTAAactgtacacccccccccccccccaagagtaTAGCAGTCCCCTTGTATTACGAAAGGCATCTGTCTGGACAGACCTCAAGTCTATGCTCAAaagcagggttgtgttcattagggtgCGAACGTTACAAAACATTTTAGCAACGGCGAacgaaaaatgtgcttttctcaTTGGACAACTCCAGGTAGAACATCCTCCATTTCAGGAACGTTTTCTTGGGTTTTGGTGCCTAAATGAACACGATCCTGGCGACTTTCTGTGAGATGTTTTCTCGTCCGCAGCTTCAGTTTTGGACTGACGGAACTGAATGGCGGTATTTGACTGCTCAAGACTCATTTTAACAGGAACGGGCAGTCAAACCTGTATAATATACAAACGTAATTACATGTATATATGAcatgtatatatcttttttttcttcttcatggtttttaaaaacgtttttttttttttgtgcttcCGATTTTATTTTAGCTGACtgttttattttactattttagtaaataaaaaaaaatgtttttacctttttaaaaaaaaaatatttttttgttgttgtttgtttttgaaGTTGATGCTACACAGCTGCTGTTGTCTTCCTGCAAtttatgcatcccaaatggcaccttattccctactgtatatagtgcccttcttttgagcagagccctatgggcactggtcaaaagtagtgcactatatagggaataaggttctatagggccctggtctaaagtagtgcactatatatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggagcattCTTTATTTTCTAGTCTGCTTTTTAGTCCCATTAACTACTGTTATGTGGTCTCTGTaacaacaggtttttaaaaatatatttgggaggaaatgttTATGAAATCATGATGGGTTTTTTAAggttatgtaaatgtattatagTGTTTTAACTTGAAGACCCTTCAACAAGCTGGCCTGGATATTAATTTAGATCATGTATATTTGAGATTTCACCCCTGAAAGATGTTGAAACGACCCTTAGCTGCTCTGTGTCTGGGTggtgatgggagggagggaaggaaggaaggaaggcttCAGAGCTCTCCTGCCCTATGGAAAATCTTGTCAATCTTTGTACACACGTTATCACCTCTAAATTGTGAATGCCCGTACAATTTTGAAATTGTAGCACCAGCAAAATGGCCAACATTTTGTTTTATCTTTTAAATCTTGTTTTCAATGCTGTTCATAGTCTTGTCTGTGAAATCTCTTTTATGTAGGAGTCAcacattttttaaagaaaataaatagGAAAAGACTCCGTTGTTGTCATTGACCGTCTTGGACGGCCACTCCTGTTGTACTCCGTGTTACTTCATGGTTTCCTTGatcataaatacatttttatacaatTAATAAAAATGTGTGATTTG
>XM_036960604.1
tatatatatatatatatatcagtgtaGTTCAATCGAATGCGTCCACTGTTTATGATGAGGCGAGAAATGGCGTCCACAGAGCCCGTCAGTGGTATGTGGTCCTAAACACAACGGACAGCCACACGGCTCTCTCGGTGGCCGCATAGTTGCGGGCTACCAGTGGACAGGGCGAGCGGCCGACTTTAGTTACGAGTTTCTTGGACCATTTGGATGATGAGGCTGAGAGTACGGAAGGCTTCTCAGCAGCCCAAACCCAGCCCCGGCCGTCCAGCCTCAGAACCCCGCCCAGCTCAGGCCAAGAGAAAACACTGCGAGGTGGCGCCCCCGCCCAGGAGAGGCCTCAGGATGCAGAAGAATGAGGCTGGCCTGTTCTCTACCATCAAGAAGTTCATCAGGGGAAATGCTGTCAAGgTAGAGCAGGACATCCCAGCTAAGAGGAGTCGTATTGATTGTAAAGTGGAAAACAGCAACCTGATCACGTCTTCTCCTCACCCACCAACCAAAGCCATCGGCAGGGGCTGCAGGAGAGGTGCTAACAAACCTGAACCGATGACGTTGAACAGTAAGCCCCTGAAGCCCAACGGTAAACTGGAGGTCCCCGTGGAGGAGGCGAGCAGTCCACCTCGCACCACTCTCCTGGGGACCATCTTCTCTCCCGTCTTCAACTTCTTCTCTCCTGCTACCAAGACAGCCACTCCTGAGTCTGGCTCCCCCGGGCAGGGGGGGTCGGAGGCTGAGGAGATGCCGAAGCAGCTGGAAAAGGAGACGGTGGTGGAGGAGATACCCACCAGTACCCCTGCATCTACAGGGGGCGTCGTCCTGTCCTCTGTTGCCCCAGCTCCATCAGTACCCCCACCACAACAGGCTCCTCTGGCTACCCCAGAACCATCTGTCGAAGGAGGGGAGATGGCTACAGATATGCCCCCTCTAACAGCTCCGGGCTGCATTCCAGTCCGCTGTTACCCCCACATCTCTCCCACGGCCCCTGCAGAGGGCACCTACGAGGAGGACTGGGAAGTCTTTGATCCGTACTTCTTCATCAAGCACGTGCCTCCGTTGACAGAGGAGCAGATAGCCAGGAAACCAGCACTGCCCCTTAAAACACGCAGCACACCAGAGTTCTCCCTAGTTCTAGATCTGGACGAGACGTTGGTGCACTGTAGTCTGAATGAGTTGGACGACGCAGACCTGACCTTCCCTGTCCTGTTCCAAGACGTCATCTACCAGGTGTACGTGCGGTTGAGGCCGTTTTTCAGAGAGTTCCTGGAGCGCATGTCTCAAATTTACGagATCATTCTGTTCACTGCCTCTAAGAAGGTGTATGCAGACAAGCTGCTCAACATCCTGGACCCCAAGAAACAGTTGGTCAGACATCGGTTGTTCCGTGAGCACTGTGTATGTGTTCAAGGAAACTACATCAAGGACTTAAACATTCTGGGAAGAGATCTTTCTAAGACTGTAATAATAGACAATTCACCTCAAGCCTTCGCCTATCAGCTTTCCAATGGGATTCCCATCGAGAGCTGGTTCATGGACAGGAATGATAGCGAGCTCCTCAAGCTGGTTCCTTTCTTAGAGAAGCTGGTGGAGATGaaTGAGGACGTAAGGCCTTACGTCAGACAGCAGTTTCGTCTTCATGACCTACTTCCTCCCGACTGATCCGTGATTGGCCGACCCAGCAGGCTAACCCATAGAAGTAGAATGTGTACATTATTCATTCTGGTTCTACGGGCTAAACCTCCCAGCACACGGAGAGGGGATGCCTTCCGTCCAACACGGTTGGAGATGACGAGAATCAACTTCCAACTGACTCTGAGGATGTCGTCCAAGTGGAGAGCTGTCTACAGCATTGCCCGTTACCAACGAGAATCTGTTCAACAAAATAACAGTTTACAGAGGGACATTTGTATCTAAACAACtacaaaacaaatattttgaaGCTATGtatatgttttgtatactcaaacTAAACTGTTATATTCCAACTAAactgtacacccccccccccccccaagagtaTAGCAGTCCCCTTGTATTACGAAAGGCATCTGTCTGGACAGACCTCAAGTCTATGCTCAAaagcagggttgtgttcattagggtgCGAACGTTACAAAACATTTTAGCAACGGCGAacgaaaaatgtgcttttctcaTTGGACAACTCCAGGTAGAACATCCTCCATTTCAGGAACGTTTTCTTGGGTTTTGGTGCCTAAATGAACACGATCCTGGCGACTTTCTGTGAGATGTTTTCTCGTCCGCAGCTTCAGTTTTGGACTGACGGAACTGAATGGCGGTATTTGACTGCTCAAGACTCATTTTAACAGGAACGGGCAGTCAAACCTGTATAATATACAAACGTAATTACATGTATATATGAcatgtatatatcttttttttcttcttcatggtttttaaaaacgtttttttttttttgtgcttcCGATTTTATTTTAGCTGACtgttttattttactattttagtaaataaaaaaaaatgtttttacctttttaaaaaaaaaatatttttttgttgttgtttgtttttgaaGTTGATGCTACACAGCTGCTGTTGTCTTCCTGCAAtttatgcatcccaaatggcaccttattccctactgtatatagtgcccttcttttgagcagagccctatgggcactggtcaaaagtagtgcactatatagggaataaggttctatagggccctggtctaaagtagtgcactatatatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggagcattCTTTATTTTCTAGTCTGCTTTTTAGTCCCATTAACTACTGTTATGTGGTCTCTGTaacaacaggtttttaaaaatatatttgggaggaaatgttTATGAAATCATGATGGGTTTTTTAAggttatgtaaatgtattatagTGTTTTAACTTGAAGACCCTTCAACAAGCTGGCCTGGATATTAATTTAGATCATGTATATTTGAGATTTCACCCCTGAAAGATGTTGAAACGACCCTTAGCTGCTCTGTGTCTGGGTggtgatgggagggagggaaggaaggaaggaaggcttCAGAGCTCTCCTGCCCTATGGAAAATCTTGTCAATCTTTGTACACACGTTATCACCTCTAAATTGTGAATGCCCGTACAATTTTGAAATTGTAGCACCAGCAAAATGGCCAACATTTTGTTTTATCTTTTAAATCTTGTTTTCAATGCTGTTCATAGTCTTGTCTGTGAAATCTCTTTTATGTAGGAGTCAcacattttttaaagaaaataaatagGAAAAGACTCCGTTGTTGTCATTGACCGTCTTGGACGGCCACTCCTGTTGTACTCCGTGTTACTTCATGGTTTCCTTGatcataaatacatttttatacaatTAATAAAAATGTGTGATTTG
>XM_036960597.1
gattggctgacactcCCATTCCAAAGTGGctactgctagctagcatgagGATGAAAAGTGCAGTTTTACGGGAAAATAACTATTTCAATCTTCTCGAGGTATCGGTGTGGATAAAGTCTTCCATGTAACGTGTAGGATGATGAGGCTGAGAGTACGGAAGGCTTCTCAGCAGCCCAAACCCAGCCCCGGCCGTCCAGCCTCAGAACCCCGCCCAGCTCAGGCCAAGAGAAAACACTGCGAGGTGGCGCCCCCGCCCAGGAGAGGCCTCAGGATGCAGAAGAATGAGGCTGGCCTGTTCTCTACCATCAAGAAGTTCATCAGGGGAAATGCTGTCAAGgTAGAGCAGGACATCCCAGCTAAGAGGAGTCGTATTGATTGTAAAGTGGAAAACAGCAACCTGATCACGTCTTCTCCTCACCCACCAACCAAAGCCATCGGCAGGGGCTGCAGGAGAGGTGCTAACAAACCTGAACCGATGACGTTGAACAGTAAGCCCCTGAAGCCCAACGGTAAACTGGAGGTCCCCGTGGAGGAGGCGAGCAGTCCACCTCGCACCACTCTCCTGGGGACCATCTTCTCTCCCGTCTTCAACTTCTTCTCTCCTGCTACCAAGACAGCCACTCCTGAGTCTGGCTCCCCCGGGCAGGGGGGGTCGGAGGCTGAGGAGATGCCGAAGCAGCTGGAAAAGGAGACGGTGGTGGAGGAGATACCCACCAGTACCCCTGCATCTACAGGGGGCGTCGTCCTGTCCTCTGTTGCCCCAGCTCCATCAGTACCCCCACCACAACAGGCTCCTCTGGCTACCCCAGAACCATCTGTCGAAGGAGGGGAGATGGCTACAGATATGCCCCCTCTAACAGCTCCGGGCTGCATTCCAGTCCGCTGTTACCCCCACATCTCTCCCACGGCCCCTGCAGAGGGCACCTACGAGGAGGACTGGGAAGTCTTTGATCCGTACTTCTTCATCAAGCACGTGCCTCCGTTGACAGAGGAGCAGATAGCCAGGAAACCAGCACTGCCCCTTAAAACACGCAGCACACCAGAGTTCTCCCTAGTTCTAGATCTGGACGAGACGTTGGTGCACTGTAGTCTGAATGAGTTGGACGACGCAGACCTGACCTTCCCTGTCCTGTTCCAAGACGTCATCTACCAGGTGTACGTGCGGTTGAGGCCGTTTTTCAGAGAGTTCCTGGAGCGCATGTCTCAAATTTACGagATCATTCTGTTCACTGCCTCTAAGAAGGTGTATGCAGACAAGCTGCTCAACATCCTGGACCCCAAGAAACAGTTGGTCAGACATCGGTTGTTCCGTGAGCACTGTGTATGTGTTCAAGGAAACTACATCAAGGACTTAAACATTCTGGGAAGAGATCTTTCTAAGACTGTAATAATAGACAATTCACCTCAAGCCTTCGCCTATCAGCTTTCCAATGGGATTCCCATCGAGAGCTGGTTCATGGACAGGAATGATAGCGAGCTCCTCAAGCTGGTTCCTTTCTTAGAGAAGCTGGTGGAGATGaaTGAGGACGTAAGGCCTTACGTCAGACAGCAGTTTCGTCTTCATGACCTACTTCCTCCCGACTGATCCGTGATTGGCCGACCCAGCAGGCTAACCCATAGAAGTAGAATGTGTACATTATTCATTCTGGTTCTACGGGCTAAACCTCCCAGCACACGGAGAGGGGATGCCTTCCGTCCAACACGGTTGGAGATGACGAGAATCAACTTCCAACTGACTCTGAGGATGTCGTCCAAGTGGAGAGCTGTCTACAGCATTGCCCGTTACCAACGAGAATCTGTTCAACAAAATAACAGTTTACAGAGGGACATTTGTATCTAAACAACtacaaaacaaatattttgaaGCTATGtatatgttttgtatactcaaacTAAACTGTTATATTCCAACTAAactgtacacccccccccccccccaagagtaTAGCAGTCCCCTTGTATTACGAAAGGCATCTGTCTGGACAGACCTCAAGTCTATGCTCAAaagcagggttgtgttcattagggtgCGAACGTTACAAAACATTTTAGCAACGGCGAacgaaaaatgtgcttttctcaTTGGACAACTCCAGGTAGAACATCCTCCATTTCAGGAACGTTTTCTTGGGTTTTGGTGCCTAAATGAACACGATCCTGGCGACTTTCTGTGAGATGTTTTCTCGTCCGCAGCTTCAGTTTTGGACTGACGGAACTGAATGGCGGTATTTGACTGCTCAAGACTCATTTTAACAGGAACGGGCAGTCAAACCTGTATAATATACAAACGTAATTACATGTATATATGAcatgtatatatcttttttttcttcttcatggtttttaaaaacgtttttttttttttgtgcttcCGATTTTATTTTAGCTGACtgttttattttactattttagtaaataaaaaaaaatgtttttacctttttaaaaaaaaaatatttttttgttgttgtttgtttttgaaGTTGATGCTACACAGCTGCTGTTGTCTTCCTGCAAtttatgcatcccaaatggcaccttattccctactgtatatagtgcccttcttttgagcagagccctatgggcactggtcaaaagtagtgcactatatagggaataaggttctatagggccctggtctaaagtagtgcactatatatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggagcattCTTTATTTTCTAGTCTGCTTTTTAGTCCCATTAACTACTGTTATGTGGTCTCTGTaacaacaggtttttaaaaatatatttgggaggaaatgttTATGAAATCATGATGGGTTTTTTAAggttatgtaaatgtattatagTGTTTTAACTTGAAGACCCTTCAACAAGCTGGCCTGGATATTAATTTAGATCATGTATATTTGAGATTTCACCCCTGAAAGATGTTGAAACGACCCTTAGCTGCTCTGTGTCTGGGTggtgatgggagggagggaaggaaggaaggaaggcttCAGAGCTCTCCTGCCCTATGGAAAATCTTGTCAATCTTTGTACACACGTTATCACCTCTAAATTGTGAATGCCCGTACAATTTTGAAATTGTAGCACCAGCAAAATGGCCAACATTTTGTTTTATCTTTTAAATCTTGTTTTCAATGCTGTTCATAGTCTTGTCTGTGAAATCTCTTTTATGTAGGAGTCAcacattttttaaagaaaataaatagGAAAAGACTCCGTTGTTGTCATTGACCGTCTTGGACGGCCACTCCTGTTGTACTCCGTGTTACTTCATGGTTTCCTTGatcataaatacatttttatacaatTAATAAAAATGTGTGATTTG

Function

NR:

description
PREDICTED: CTD small phosphatase-like protein 2-A

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K17616 CTDSPL2; CTD small phosphatase-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960590.1 False 3437 mRNA 0.46 13 98974844 98995846
XM_036960604.1 False 3422 mRNA 0.46 13 98974844 98995850
XM_036960597.1 True 3348 mRNA 0.46 13 98974844 98996174

Neighbor

gene id symbol gene type direction distance location
LOC110500849 LOC106561754 coding downstream 7546 98959028 ~ 98967298 (-)
LOC118944229 NA coding downstream 20605 98954131 ~ 98954239 (-)
LOC118944200 NA coding downstream 24723 98949908 ~ 98950121 (-)
LOC118943882 LOC106561728 coding downstream 30803 98936783 ~ 98944041 (-)
LOC118944228 NA coding downstream 42858 98931878 ~ 98931986 (-)
LOC110500795 LOC106561757 coding upstream 1237 98997411 ~ 99013377 (-)
galk2 galk2 coding upstream 158085 99154259 ~ 99166352 (-)
tjp1b tjp1 coding upstream 225676 99221850 ~ 99503455 (-)
duox LOC106584698 coding upstream 547615 99543789 ~ 99582886 (-)
LOC110500900 LOC106561773 coding upstream 604611 99600785 ~ 99615331 (-)
G210738 NA non-coding downstream 10735 98963751 ~ 98964109 (-)
G210730 NA non-coding downstream 19303 98932956 ~ 98955541 (-)
G210728 NA non-coding downstream 64551 98909936 ~ 98910293 (-)
G210656 NA non-coding downstream 132928 98835671 ~ 98841916 (-)
G210710 NA non-coding downstream 164841 98809799 ~ 98810003 (-)
G210757 NA non-coding upstream 20539 99016713 ~ 99016971 (-)
G210760 NA non-coding upstream 21973 99018147 ~ 99018442 (-)
G211106 NA non-coding upstream 98925 99095099 ~ 99095361 (-)
G211107 NA non-coding upstream 99764 99095938 ~ 99096218 (-)
G211108 NA non-coding upstream 102936 99099110 ~ 99099313 (-)
LOC118943885 LOC106561728 other downstream 28775 98914015 ~ 98946069 (-)
LOC118936884 NA other downstream 829327 98127948 ~ 98145517 (-)
G209841 NA other downstream 1355632 97618859 ~ 97619212 (-)
G209802 NA other downstream 1472450 97501172 ~ 97502394 (-)
G210765 NA other upstream 29558 99025732 ~ 99026118 (-)
G211127 NA other upstream 127059 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 619502 99615676 ~ 99619142 (-)
LOC110502568 LOC106561766 other upstream 714527 99697219 ~ 99725327 (-)
G211402 NA other upstream 860139 99856313 ~ 99857855 (-)

Expression


Co-expression Network