LOC110500795 (LOC106561757)


Basic Information

Item Value
gene id LOC110500795
gene name LOC106561757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98997411 ~ 99013377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578332.2
GAACGCGACCCAGGTCATTCTGGGTATTATGCAATCCGTGACACTCTCGAGGCGTGTGTTCAAAAAGATAGACCAGTTTTAATAGAAGTCTGCGGGTAGATCGCCAGCTTGCAAGGATCATATCCCGTTTTCGCATTTTCCTTCATTAAATAAGAGAAAACATGGCAACAGTGACAGTCATGCACCGGCAGCCAGCCCTGTGGAGGCAGTGCCATAGGACGGCTGGTATTGGCGTCTGTCGTCTCCACACCAGCAGCAGCAGTGCCTCCTCCAAAGAGCATTACAAGGTCCTAGTGCTGGGAGGAGGAACTGGGGGCATCGCAATGAGTGCTCGGATGAAGAGGAAGCTAGGGGCGGAAAATGTGGCCATAGTGGAAACCAGTGAGATGCACTACTATCAACCCATCTGGACGTTGGTTGGAGCTGGAGTTAAAAGTGTGGCCGCCTCTGGTCGCCCTACAGCCAGTGTCATACCTCCTGGAGTCAAGTGGGTGAAATCGAATGTACGGGAGAtcgacccagacacacacactgtacgcaCAGACAATGGCATGGAGaTCTCCTACCAGTATCTGATAGTGGCTCTAGGTCTACAACTACACTACGAGAAGATCAAAGGCCTGCCTGAGATCGATGATTGGGAGGAATTTAAGATTGGTTCAAACTACTCCGTGCAAACCGTGGAGAAGACTTGGAGTGCCCTGCAGAACTTCAAGGAGGGAAATGCTATATTCTCTTTCCCCAACACTCCGGTGAAGTGTGCAGGAGCACCACAGAAGATCATGTACCTGACCGATGCTTATCTCAGAAAGACAGGGAAAAGAGCAACTGCCAACGTCATGTACAACACGTCACTGCCAGTGCTGTTTGGGATCAAGAAATATGCAGATGCATTGTGGGAGATAGTGAAGAATCGCGACATCCAGGTGAATCTCAGACACAACCTCGTAGAGGTCCGGGCCAACAAGCAGGAGGCCGTGTTTGAAAACCTTGACAATCCTGGAGAAACTGAAGTGTTTGAGTATGAGATGCTTCACGTCACTCCTCCAATGGGACCCAGCCCGGTGATTAAAGGATCCTCATTGGCTGATGAGGGTGGCTGGCTGGACGTCAACAAAGAGACCCTTCAACATAACAAGTATCCCAACGTGTTTGGGATCGGAGACTGCACCAACCTGCCAACAGCCAAAACGGCTGCTGCGGTGGCTGCTCAGTCTAGTATTCTGGACAGGACTATTTCAAAAGTCTTGAAGAATGAAAAGCCGGATACGAAGTACGACGGCTACACTTCCTGCCCTTTGGTGACGAGTTACAGTAAAGTCATTCTGGCTGAGTTTGACTACAGTGGTCAGCCATTGGAGACGTTCCCCATTGACCAAAGCAAGGAGAGATGGACCATGTACCAAATGAAAGCTGACGTGATGCCTCATCTGTACTGGCATGGTCTCCTCAAGGGATtctggggtggaccaggaccaatCAGGAAAATCCTGCACCTTGGGATGAAATAGAAGTTATAACCTGTTAAGATGTGCTGTTCCAGACTGCTACACTGTAATCTTTACAATAAGCACGATCATTTCATAATACAATTTAAACAAGTCATTGACAATCAATTGGAATCTCAAAGTGAATCGATGACAAAAGTAATATTGCAGCATTCCATGACATACTATATCgttcattataaactgggtggttcgagctctgaatgctgattggctgaaagccgtggtatatcagaccgtatacaacgggtatgacaaaacatgtatttgtagTGCTCTAATTATGTtcgtaaccagt
>XM_021578338.2
AATTTCCGTTGTGCGCAATAGCCTGGGGGCGAGGTTACTGTAGCCTTGACTGCCCTAATTGGCTCTGCAGCGACAAGTGGTGCGTTTGAAAACTATAGAaagttctctctttttcttttccGTGTGACTTTACCTGGAACTTTTTTGAAACCGAGAAAACATGGCAACAGTGACAGTCATGCACCGGCAGCCAGCCCTGTGGAGGCAGTGCCATAGGACGGCTGGTATTGGCGTCTGTCGTCTCCACACCAGCAGCAGCAGTGCCTCCTCCAAAGAGCATTACAAGGTCCTAGTGCTGGGAGGAGGAACTGGGGGCATCGCAATGAGTGCTCGGATGAAGAGGAAGCTAGGGGCGGAAAATGTGGCCATAGTGGAAACCAGTGAGATGCACTACTATCAACCCATCTGGACGTTGGTTGGAGCTGGAGTTAAAAGTGTGGCCGCCTCTGGTCGCCCTACAGCCAGTGTCATACCTCCTGGAGTCAAGTGGGTGAAATCGAATGTACGGGAGAtcgacccagacacacacactgtacgcaCAGACAATGGCATGGAGaTCTCCTACCAGTATCTGATAGTGGCTCTAGGTCTACAACTACACTACGAGAAGATCAAAGGCCTGCCTGAGATCGATGATTGGGAGGAATTTAAGATTGGTTCAAACTACTCCGTGCAAACCGTGGAGAAGACTTGGAGTGCCCTGCAGAACTTCAAGGAGGGAAATGCTATATTCTCTTTCCCCAACACTCCGGTGAAGTGTGCAGGAGCACCACAGAAGATCATGTACCTGACCGATGCTTATCTCAGAAAGACAGGGAAAAGAGCAACTGCCAACGTCATGTACAACACGTCACTGCCAGTGCTGTTTGGGATCAAGAAATATGCAGATGCATTGTGGGAGATAGTGAAGAATCGCGACATCCAGGTGAATCTCAGACACAACCTCGTAGAGGTCCGGGCCAACAAGCAGGAGGCCGTGTTTGAAAACCTTGACAATCCTGGAGAAACTGAAGTGTTTGAGTATGAGATGCTTCACGTCACTCCTCCAATGGGACCCAGCCCGGTGATTAAAGGATCCTCATTGGCTGATGAGGGTGGCTGGCTGGACGTCAACAAAGAGACCCTTCAACATAACAAGTATCCCAACGTGTTTGGGATCGGAGACTGCACCAACCTGCCAACAGCCAAAACGGCTGCTGCGGTGGCTGCTCAGTCTAGTATTCTGGACAGGACTATTTCAAAAGTCTTGAAGAATGAAAAGCCGGATACGAAGTACGACGGCTACACTTCCTGCCCTTTGGTGACGAGTTACAGTAAAGTCATTCTGGCTGAGTTTGACTACAGTGGTCAGCCATTGGAGACGTTCCCCATTGACCAAAGCAAGGAGAGATGGACCATGTACCAAATGAAAGCTGACGTGATGCCTCATCTGTACTGGCATGGTCTCCTCAAGGGATtctggggtggaccaggaccaatCAGGAAAATCCTGCACCTTGGGATGAAATAGAAGTTATAACCTGTTAAGATGTGCTGTTCCAGACTGCTACACTGTAATCTTTACAATAAGCACGATCATTTCATAATACAATTTAAACAAGTCATTGACAATCAATTGGAATCTCAAAGTGAATCGATGACAAAAGTAATATTGCAGCATTCCATGACATACTATATCgttcattataaactgggtggttcgagctctgaatgctgattggctgaaagccgtggtatatcagaccgtatacaacgggtatgacaaaacatgtatttgtagTGCTCTAATTATGTtcgtaaccagt

Function

NR:

description
sulfide:quinone oxidoreductase, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22470 SQOR; eukaryotic sulfide quinone oxidoreductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578332.2 False 1806 mRNA 0.48 10 98997411 99013141
XM_021578338.2 True 1805 mRNA 0.48 10 98997411 99013377

Neighbor

gene id symbol gene type direction distance location
ctdspl2a LOC106561755 coding downstream 1237 98974844 ~ 98996174 (-)
LOC110500849 LOC106561754 coding downstream 30113 98959028 ~ 98967298 (-)
LOC118944229 NA coding downstream 43172 98954131 ~ 98954239 (-)
LOC118944200 NA coding downstream 47290 98949908 ~ 98950121 (-)
LOC118943882 LOC106561728 coding downstream 53370 98936783 ~ 98944041 (-)
galk2 galk2 coding upstream 140882 99154259 ~ 99166352 (-)
tjp1b tjp1 coding upstream 208473 99221850 ~ 99503455 (-)
duox LOC106584698 coding upstream 530412 99543789 ~ 99582886 (-)
LOC110500900 LOC106561773 coding upstream 587408 99600785 ~ 99615331 (-)
LOC118936886 NA coding upstream 602455 99615676 ~ 99619142 (-)
G210738 NA non-coding downstream 33302 98963751 ~ 98964109 (-)
G210730 NA non-coding downstream 41870 98932956 ~ 98955541 (-)
G210728 NA non-coding downstream 87118 98909936 ~ 98910293 (-)
G210656 NA non-coding downstream 155495 98835671 ~ 98841916 (-)
G210710 NA non-coding downstream 187408 98809799 ~ 98810003 (-)
G210757 NA non-coding upstream 3336 99016713 ~ 99016971 (-)
G210760 NA non-coding upstream 4770 99018147 ~ 99018442 (-)
G211106 NA non-coding upstream 81722 99095099 ~ 99095361 (-)
G211107 NA non-coding upstream 82561 99095938 ~ 99096218 (-)
G211108 NA non-coding upstream 85733 99099110 ~ 99099313 (-)
LOC118943885 LOC106561728 other downstream 51342 98914015 ~ 98946069 (-)
LOC118936884 NA other downstream 851894 98127948 ~ 98145517 (-)
G209841 NA other downstream 1378199 97618859 ~ 97619212 (-)
G209802 NA other downstream 1495017 97501172 ~ 97502394 (-)
G210765 NA other upstream 12355 99025732 ~ 99026118 (-)
G211127 NA other upstream 109856 99123233 ~ 99123658 (-)
LOC110502568 LOC106561766 other upstream 697324 99697219 ~ 99725327 (-)
G211402 NA other upstream 842936 99856313 ~ 99857855 (-)

Expression


Co-expression Network